RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 GBP3Q9H0R5 595 aa15.66■□□□□ 0.1
TCOF1-214ENST00000515035 CUL7Q14999 1698 aa15.66■□□□□ 0.1
TCOF1-214ENST00000515035 ARHGAP29Q52LW3 1261 aa15.66■□□□□ 0.1
TCOF1-214ENST00000515035 TXLNBQ8N3L3 684 aa15.66■□□□□ 0.1
TCOF1-214ENST00000515035 GAS2L2Q8NHY3 880 aa15.66■□□□□ 0.1
TCOF1-214ENST00000515035 CRACR2AQ9BSW2 395 aa15.66■□□□□ 0.1
TCOF1-214ENST00000515035 PRKAR2BP31323 418 aa15.66■□□□□ 0.1
TCOF1-214ENST00000515035 KIF18AQ8NI77 898 aa15.66■□□□□ 0.1
TCOF1-214ENST00000515035 WDR97A6NE52 1622 aa15.66■□□□□ 0.1
TCOF1-214ENST00000515035 TIAM1Q13009 1591 aa15.66■□□□□ 0.1
TCOF1-214ENST00000515035 ERC1Q8IUD2 1116 aa15.66■□□□□ 0.1
TCOF1-214ENST00000515035 TBC1D2BQ9UPU7 963 aa15.66■□□□□ 0.1
TCOF1-214ENST00000515035 STIM1Q13586 685 aa15.65■□□□□ 0.1
TCOF1-214ENST00000515035 SEPT7Q16181 437 aaKnown RBP15.65■□□□□ 0.1
TCOF1-214ENST00000515035 PLEKHO1Q53GL0 409 aaPredicted RBP15.65■□□□□ 0.1
TCOF1-214ENST00000515035 SYCP1Q15431 976 aa15.65■□□□□ 0.1
TCOF1-214ENST00000515035 SFPQP23246 707 aaKnown RBP eCLIP15.65■□□□□ 0.1
TCOF1-214ENST00000515035 PPP6R1Q9UPN7 881 aa15.65■□□□□ 0.1
TCOF1-214ENST00000515035 SUPT6HQ7KZ85 1726 aaKnown RBP15.65■□□□□ 0.1
TCOF1-214ENST00000515035 BLOC1S2Q6QNY1 142 aa15.65■□□□□ 0.1
TCOF1-214ENST00000515035 ZSCAN31Q96LW9 406 aaPredicted RBP15.64■□□□□ 0.09
TCOF1-214ENST00000515035 DYDC1Q8WWB3 177 aa15.64■□□□□ 0.09
TCOF1-214ENST00000515035 SHTN1A0MZ66 631 aa15.64■□□□□ 0.09
TCOF1-214ENST00000515035 SMTNL1A8MU46 457 aa15.64■□□□□ 0.09
TCOF1-214ENST00000515035 EPB41L2O43491 1005 aaKnown RBP15.64■□□□□ 0.09
TCOF1-214ENST00000515035 CCDC184Q52MB2 194 aa15.64■□□□□ 0.09
TCOF1-214ENST00000515035 ANKRD62A6NC57 917 aa15.63■□□□□ 0.09
TCOF1-214ENST00000515035 CFAP100Q494V2 611 aa15.63■□□□□ 0.09
TCOF1-214ENST00000515035 CDK19Q9BWU1 502 aa15.63■□□□□ 0.09
TCOF1-214ENST00000515035 CCDC141Q6ZP82 1450 aa15.63■□□□□ 0.09
TCOF1-214ENST00000515035 SLC26A8Q96RN1 970 aa15.63■□□□□ 0.09
TCOF1-214ENST00000515035 PDRG1Q9NUG6 133 aa15.63■□□□□ 0.09
TCOF1-214ENST00000515035 STK11IPQ8N1F8 1099 aa15.63■□□□□ 0.09
TCOF1-214ENST00000515035 ERBINQ96RT1 1412 aa15.62■□□□□ 0.09
TCOF1-214ENST00000515035 CDK13Q14004 1512 aaKnown RBP15.62■□□□□ 0.09
TCOF1-214ENST00000515035 SAMD1Q6SPF0 538 aaPredicted RBP15.62■□□□□ 0.09
TCOF1-214ENST00000515035 TRIM22Q8IYM9 498 aa15.62■□□□□ 0.09
TCOF1-214ENST00000515035 KRT18P05783 430 aaKnown RBP15.62■□□□□ 0.09
TCOF1-214ENST00000515035 URI1O94763 535 aaPredicted RBP15.62■□□□□ 0.09
TCOF1-214ENST00000515035 JAKMIP1Q96N16 626 aaKnown RBP15.62■□□□□ 0.09
TCOF1-214ENST00000515035 POLR3GO15318 223 aaPredicted RBP15.61■□□□□ 0.09
TCOF1-214ENST00000515035 SLC4A2P04920 1241 aa15.61■□□□□ 0.09
TCOF1-214ENST00000515035 CAMK4Q16566 473 aa15.61■□□□□ 0.09
TCOF1-214ENST00000515035 PHF23Q9BUL5 403 aaPredicted RBP15.61■□□□□ 0.09
TCOF1-214ENST00000515035 RTEL1-TNFRSF6BF6WH68 1400 aa15.61■□□□□ 0.09
TCOF1-214ENST00000515035 TANGO6Q9C0B7 1094 aa15.61■□□□□ 0.09
TCOF1-214ENST00000515035 PDIA4P13667 645 aaKnown RBP15.61■□□□□ 0.09
TCOF1-214ENST00000515035 TATP17735 454 aaPredicted RBP15.61■□□□□ 0.09
TCOF1-214ENST00000515035 WDR63Q8IWG1 891 aa15.61■□□□□ 0.09
TCOF1-214ENST00000515035 MAP4K4O95819 1239 aaPredicted RBP15.61■□□□□ 0.09
TCOF1-214ENST00000515035 NBPF8Q3BBV2 869 aa15.61■□□□□ 0.09
TCOF1-214ENST00000515035 SRCIN1Q9C0H9 1055 aa15.61■□□□□ 0.09
TCOF1-214ENST00000515035 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.61■□□□□ 0.09
TCOF1-214ENST00000515035 ZSCAN12O43309 604 aa15.61■□□□□ 0.09
TCOF1-214ENST00000515035 TNNT1P13805 278 aa15.61■□□□□ 0.09
TCOF1-214ENST00000515035 GTF2F1P35269 517 aaKnown RBP eCLIP15.61■□□□□ 0.09
TCOF1-214ENST00000515035 PPP4R3BQ5MIZ7 849 aa15.61■□□□□ 0.09
TCOF1-214ENST00000515035 CCDC183Q5T5S1 534 aa15.61■□□□□ 0.09
TCOF1-214ENST00000515035 IBSPP21815 317 aaPredicted RBP15.6■□□□□ 0.09
TCOF1-214ENST00000515035 CCT4P50991 539 aaKnown RBP15.6■□□□□ 0.09
TCOF1-214ENST00000515035 NBPF1Q3BBV0 1214 aa15.6■□□□□ 0.09
TCOF1-214ENST00000515035 ARHGEF11O15085 1522 aa15.6■□□□□ 0.09
TCOF1-214ENST00000515035 USP25Q9UHP3 1055 aa15.6■□□□□ 0.09
TCOF1-214ENST00000515035 CCDC148Q8NFR7 591 aa15.6■□□□□ 0.09
TCOF1-214ENST00000515035 FERMT3Q86UX7 667 aa15.6■□□□□ 0.09
TCOF1-214ENST00000515035 ANKRD18AQ8IVF6 992 aa15.6■□□□□ 0.09
TCOF1-214ENST00000515035 KIAA1328Q86T90 577 aa15.59■□□□□ 0.09
TCOF1-214ENST00000515035 C16orf45Q96MC5 204 aaPredicted RBP15.59■□□□□ 0.09
TCOF1-214ENST00000515035 STRN4Q9NRL3 753 aa15.59■□□□□ 0.09
TCOF1-214ENST00000515035 ADGRL1O94910 1474 aa15.59■□□□□ 0.09
TCOF1-214ENST00000515035 CABP1Q9NZU7 370 aa15.59■□□□□ 0.09
TCOF1-214ENST00000515035 DYNC1I1O14576 645 aa15.58■□□□□ 0.09
TCOF1-214ENST00000515035 MCM5P33992 734 aa15.58■□□□□ 0.09
TCOF1-214ENST00000515035 TNPO1Q92973 898 aaKnown RBP15.58■□□□□ 0.09
TCOF1-214ENST00000515035 JAKMIP3Q5VZ66 844 aa15.58■□□□□ 0.08
TCOF1-214ENST00000515035 RBM33Q96EV2 1170 aaKnown RBP15.58■□□□□ 0.08
TCOF1-214ENST00000515035 TBC1D2Q9BYX2 928 aa15.58■□□□□ 0.08
TCOF1-214ENST00000515035 PLB1Q6P1J6 1458 aa15.58■□□□□ 0.08
TCOF1-214ENST00000515035 ATAD2Q6PL18 1390 aa15.58■□□□□ 0.08
TCOF1-214ENST00000515035 URB2Q14146 1524 aaKnown RBP15.58■□□□□ 0.08
TCOF1-214ENST00000515035 SKAP1Q86WV1 359 aa15.58■□□□□ 0.08
TCOF1-214ENST00000515035 EZRP15311 586 aaKnown RBP15.58■□□□□ 0.08
TCOF1-214ENST00000515035 SSFA2P28290 1259 aa15.58■□□□□ 0.08
TCOF1-214ENST00000515035 MAP9Q49MG5 647 aa15.58■□□□□ 0.08
TCOF1-214ENST00000515035 CWC27Q6UX04 472 aaKnown RBP15.57■□□□□ 0.08
TCOF1-214ENST00000515035 CLIP2Q9UDT6 1046 aa15.57■□□□□ 0.08
TCOF1-214ENST00000515035 EIF5P55010 431 aaKnown RBP15.57■□□□□ 0.08
TCOF1-214ENST00000515035 KIF4BQ2VIQ3 1234 aa15.57■□□□□ 0.08
TCOF1-214ENST00000515035 TAF4BQ92750 862 aa15.57■□□□□ 0.08
TCOF1-214ENST00000515035 SPDYE4A6NLX3 237 aa15.56■□□□□ 0.08
TCOF1-214ENST00000515035 IPO4Q8TEX9 1081 aaKnown RBP15.56■□□□□ 0.08
TCOF1-214ENST00000515035 SLC12A5Q9H2X9 1139 aa15.56■□□□□ 0.08
TCOF1-214ENST00000515035 CNKSR2Q8WXI2 1034 aa15.56■□□□□ 0.08
TCOF1-214ENST00000515035 ANO10Q9NW15 660 aa15.56■□□□□ 0.08
TCOF1-214ENST00000515035 IKQ13123 557 aaPredicted RBP15.56■□□□□ 0.08
TCOF1-214ENST00000515035 FAM107BQ9H098 131 aa15.56■□□□□ 0.08
TCOF1-214ENST00000515035 KIF5CO60282 957 aa15.55■□□□□ 0.08
TCOF1-214ENST00000515035 HDGFL1Q5TGJ6 251 aa15.55■□□□□ 0.08
TCOF1-214ENST00000515035 GPATCH11Q8N954 259 aa15.55■□□□□ 0.08
TCOF1-214ENST00000515035 TOM1L2Q6ZVM7 507 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms