RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 NSD3Q9BZ95 1437 aa9.54□□□□□ -0.88
CLIP1-205ENST00000514271 RNF216Q9NWF9 866 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-205ENST00000514271 LTN1O94822 1766 aa9.54□□□□□ -0.88
CLIP1-205ENST00000514271 COL18A1P39060 1754 aa9.54□□□□□ -0.88
CLIP1-205ENST00000514271 WNK3Q9BYP7 1800 aa9.53□□□□□ -0.88
CLIP1-205ENST00000514271 ABTB2Q8N961 1025 aa9.52□□□□□ -0.88
CLIP1-205ENST00000514271 COG3Q96JB2 828 aa9.52□□□□□ -0.88
CLIP1-205ENST00000514271 HSP90B1P14625 803 aaKnown RBP9.52□□□□□ -0.89
CLIP1-205ENST00000514271 LRP6O75581 1613 aa9.52□□□□□ -0.89
CLIP1-205ENST00000514271 CAMTA1Q9Y6Y1 1673 aa9.52□□□□□ -0.89
CLIP1-205ENST00000514271 SLC12A5Q9H2X9 1139 aa9.51□□□□□ -0.89
CLIP1-205ENST00000514271 KNSTRNQ9Y448 316 aa9.51□□□□□ -0.89
CLIP1-205ENST00000514271 ERBB4Q15303 1308 aa9.51□□□□□ -0.89
CLIP1-205ENST00000514271 FNBP4Q8N3X1 1017 aaPredicted RBP9.51□□□□□ -0.89
CLIP1-205ENST00000514271 KIF2CQ99661 725 aa9.51□□□□□ -0.89
CLIP1-205ENST00000514271 NUTM2FA1L443 756 aa9.51□□□□□ -0.89
CLIP1-205ENST00000514271 PANK3Q9H999 370 aa9.51□□□□□ -0.89
CLIP1-205ENST00000514271 ATRNO75882 1429 aa9.5□□□□□ -0.89
CLIP1-205ENST00000514271 MEX3CQ5U5Q3 659 aaKnown RBP9.5□□□□□ -0.89
CLIP1-205ENST00000514271 CARD14Q9BXL6 1004 aa9.5□□□□□ -0.89
CLIP1-205ENST00000514271 LAS1LQ9Y4W2 734 aaKnown RBP9.5□□□□□ -0.89
CLIP1-205ENST00000514271 XRCC6P12956 609 aaKnown RBP eCLIP9.49□□□□□ -0.89
CLIP1-205ENST00000514271 NLRP6P59044 892 aa9.49□□□□□ -0.89
CLIP1-205ENST00000514271 CDCA7Q9BWT1 371 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-205ENST00000514271 THRAP3Q9Y2W1 955 aaKnown RBP9.49□□□□□ -0.89
CLIP1-205ENST00000514271 BRPF1P55201 1214 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-205ENST00000514271 DDX60Q8IY21 1712 aaKnown RBP9.48□□□□□ -0.89
CLIP1-205ENST00000514271 GCP02774 474 aa9.48□□□□□ -0.89
CLIP1-205ENST00000514271 PPP4R3CPQ6ZMV5 832 aa9.48□□□□□ -0.89
CLIP1-205ENST00000514271 MAP2P11137 1827 aaKnown RBP9.48□□□□□ -0.89
CLIP1-205ENST00000514271 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.47□□□□□ -0.89
CLIP1-205ENST00000514271 IL17RAQ96F46 866 aa9.47□□□□□ -0.89
CLIP1-205ENST00000514271 TRPC5Q9UL62 973 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-205ENST00000514271 MYH15Q9Y2K3 1946 aa9.47□□□□□ -0.89
CLIP1-205ENST00000514271 PARP4Q9UKK3 1724 aaKnown RBP9.47□□□□□ -0.89
CLIP1-205ENST00000514271 FLT4P35916 1363 aa9.47□□□□□ -0.89
CLIP1-205ENST00000514271 RBM25P49756 843 aaKnown RBP9.47□□□□□ -0.89
CLIP1-205ENST00000514271 ARHGEF25Q86VW2 580 aa9.47□□□□□ -0.89
CLIP1-205ENST00000514271 FYB1O15117 783 aa9.47□□□□□ -0.89
CLIP1-205ENST00000514271 MAPK8IP3Q9UPT6 1336 aa9.47□□□□□ -0.89
CLIP1-205ENST00000514271 VPS72Q15906 364 aa9.46□□□□□ -0.89
CLIP1-205ENST00000514271 UNC5CLQ8IV45 518 aa9.46□□□□□ -0.89
CLIP1-205ENST00000514271 NGLY1Q96IV0 654 aa9.46□□□□□ -0.89
CLIP1-205ENST00000514271 THSD7AQ9UPZ6 1657 aa9.46□□□□□ -0.9
CLIP1-205ENST00000514271 POLR3GLQ9BT43 218 aa9.46□□□□□ -0.9
CLIP1-205ENST00000514271 TBC1D2Q9BYX2 928 aa9.46□□□□□ -0.9
CLIP1-205ENST00000514271 COL5A2P05997 1499 aaPredicted RBP9.46□□□□□ -0.9
CLIP1-205ENST00000514271 AK9Q5TCS8 1911 aa9.46□□□□□ -0.9
CLIP1-205ENST00000514271 RTL5Q5HYW3 569 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-205ENST00000514271 SNX21Q969T3 373 aa9.45□□□□□ -0.9
CLIP1-205ENST00000514271 PLEKHF1Q96S99 279 aa9.45□□□□□ -0.9
CLIP1-205ENST00000514271 PRDM11Q9NQV5 511 aa9.45□□□□□ -0.9
CLIP1-205ENST00000514271 ISY1Q9ULR0 285 aaKnown RBP9.45□□□□□ -0.9
CLIP1-205ENST00000514271 CRB1P82279 1406 aa9.45□□□□□ -0.9
CLIP1-205ENST00000514271 NCAPD2Q15021 1401 aa9.45□□□□□ -0.9
CLIP1-205ENST00000514271 IP6K1Q92551 441 aa9.45□□□□□ -0.9
CLIP1-205ENST00000514271 KIAA0232Q92628 1395 aa9.44□□□□□ -0.9
CLIP1-205ENST00000514271 GOLGA2Q08379 1002 aa9.44□□□□□ -0.9
CLIP1-205ENST00000514271 LMOD2Q6P5Q4 547 aa9.44□□□□□ -0.9
CLIP1-205ENST00000514271 PPP1R9BQ96SB3 815 aa9.44□□□□□ -0.9
CLIP1-205ENST00000514271 PRDM4Q9UKN5 801 aa9.44□□□□□ -0.9
CLIP1-205ENST00000514271 PCDHB15Q9Y5E8 787 aa9.44□□□□□ -0.9
CLIP1-205ENST00000514271 DDX17Q92841 729 aaKnown RBP9.44□□□□□ -0.9
CLIP1-205ENST00000514271 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.44□□□□□ -0.9
CLIP1-205ENST00000514271 BCL9LQ86UU0 1499 aa9.44□□□□□ -0.9
CLIP1-205ENST00000514271 CYP2E1P05181 493 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-205ENST00000514271 RLBP1P12271 317 aa9.44□□□□□ -0.9
CLIP1-205ENST00000514271 TERF1P54274 439 aa9.44□□□□□ -0.9
CLIP1-205ENST00000514271 HDAC1Q13547 482 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-205ENST00000514271 NME9Q86XW9 330 aa9.44□□□□□ -0.9
CLIP1-205ENST00000514271 RGS12O14924 1447 aa9.43□□□□□ -0.9
CLIP1-205ENST00000514271 AFF2P51816 1311 aa9.43□□□□□ -0.9
CLIP1-205ENST00000514271 E9PSI1 815 aa9.43□□□□□ -0.9
CLIP1-205ENST00000514271 HMGB2P26583 209 aaKnown RBP9.43□□□□□ -0.9
CLIP1-205ENST00000514271 RBM6P78332 1123 aaKnown RBP9.43□□□□□ -0.9
CLIP1-205ENST00000514271 XPCQ01831 940 aaPredicted RBP9.43□□□□□ -0.9
CLIP1-205ENST00000514271 BARGINQ6ZT62 677 aa9.43□□□□□ -0.9
CLIP1-205ENST00000514271 RARSP54136 660 aaKnown RBP9.43□□□□□ -0.9
CLIP1-205ENST00000514271 MORC1Q86VD1 984 aa9.43□□□□□ -0.9
CLIP1-205ENST00000514271 WWC1Q8IX03 1113 aa9.43□□□□□ -0.9
CLIP1-205ENST00000514271 WDR17Q8IZU2 1322 aa9.43□□□□□ -0.9
CLIP1-205ENST00000514271 BCAR3O75815 825 aa9.43□□□□□ -0.9
CLIP1-205ENST00000514271 SLC4A3P48751 1232 aa9.43□□□□□ -0.9
CLIP1-205ENST00000514271 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.43□□□□□ -0.9
CLIP1-205ENST00000514271 CACNA1FO60840 1977 aa9.42□□□□□ -0.9
CLIP1-205ENST00000514271 SMC5Q8IY18 1101 aa9.42□□□□□ -0.9
CLIP1-205ENST00000514271 USP21Q9UK80 565 aa9.42□□□□□ -0.9
CLIP1-205ENST00000514271 PEAK1Q9H792 1746 aa9.42□□□□□ -0.9
CLIP1-205ENST00000514271 RGPD5Q99666 1765 aa9.42□□□□□ -0.9
CLIP1-205ENST00000514271 BCL9O00512 1426 aa9.42□□□□□ -0.9
CLIP1-205ENST00000514271 HMGB1P09429 215 aaKnown RBP9.42□□□□□ -0.9
CLIP1-205ENST00000514271 CLUAP1Q96AJ1 413 aa9.42□□□□□ -0.9
CLIP1-205ENST00000514271 CFAP53Q96M91 514 aa9.41□□□□□ -0.9
CLIP1-205ENST00000514271 GLI3P10071 1580 aa9.41□□□□□ -0.9
CLIP1-205ENST00000514271 PAXIP1Q6ZW49 1069 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-205ENST00000514271 CARD10Q9BWT7 1032 aa9.41□□□□□ -0.9
CLIP1-205ENST00000514271 PKD1L3Q7Z443 1732 aa9.41□□□□□ -0.9
CLIP1-205ENST00000514271 NUTM2BA6NNL0 878 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-205ENST00000514271 NUTM2EB1AL46 878 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-205ENST00000514271 NUTM2AQ8IVF1 878 aaPredicted RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms