RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 CCDC192P0DO97 292 aa10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 C1orf115Q9H7X2 142 aa10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 SWAP70Q9UH65 585 aa10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 ROCK1Q13464 1354 aa10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 IVLP07476 585 aa10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 ATP2B1P20020 1258 aa10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 CEP63Q96MT8 703 aa10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 PPP6R1Q9UPN7 881 aa10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 SPDYE4A6NLX3 237 aa10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 GNAI1P63096 354 aa10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 BMS1Q14692 1282 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 TCP11L2Q8N4U5 519 aa10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 SYNJ2O15056 1496 aa10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 DHX16O60231 1041 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 LMAN1P49257 510 aa10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 FAM177A1Q8N128 213 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 BRPF1P55201 1214 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 RALYLQ86SE5 291 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 KRT222Q8N1A0 295 aa10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 STRN4Q9NRL3 753 aa10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 TCOF1Q13428 1488 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 MAP9Q49MG5 647 aa10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 DAAM2Q86T65 1068 aa10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 BANK1Q8NDB2 785 aa10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 PRDM11Q9NQV5 511 aa10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 CDK13Q14004 1512 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 KDM5BQ9UGL1 1544 aa10.25□□□□□ -0.77
LIMCH1-218ENST00000513024 TTC31Q49AM3 519 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 SMARCC1Q92922 1105 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 DAPK1P53355 1430 aa10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 KIF18AQ8NI77 898 aa10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 RASSF4Q9H2L5 321 aa10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 A0A1B0GUA9 196 aa10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 NEUROD6Q96NK8 337 aa10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 CTTNBP2Q8WZ74 1663 aa10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 KIF20AO95235 890 aa10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 HSP90AB4PQ58FF6 505 aa10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 SMAP1Q8IYB5 467 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 CFAP57Q96MR6 1250 aa10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 TSPYL4Q9UJ04 414 aa10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 LRRFIP2Q9Y608 721 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 BRD4O60885 1362 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-218ENST00000513024 K7ELQ4 463 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 ABCC5O15440 1437 aa10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 MCM2P49736 904 aa10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 PTPN14Q15678 1187 aa10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 XPCQ01831 940 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 LRPPRCP42704 1394 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 PDCP20941 246 aa10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 GGNBP2Q9H3C7 697 aa10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 MRVI1Q9Y6F6 885 aa10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 WDR62O43379 1518 aa10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 EXOSC9Q06265 439 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 PDE3AQ14432 1141 aa10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 WASHC4Q2M389 1173 aa10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 ZFYVE27Q5T4F4 411 aa10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 WWC2Q6AWC2 1192 aa10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 GBP6Q6ZN66 633 aa10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 ZNHIT6Q9NWK9 470 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-218ENST00000513024 VGLL3A8MV65 326 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 SURF6O75683 361 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 CCDC175P0C221 793 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 PSMA5P28066 241 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 ERICH2A1L162 156 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 UBTFL1P0CB47 393 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 CLCN1P35523 988 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 TOM1L2Q6ZVM7 507 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 SKAP1Q86WV1 359 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 PRIMPOLQ96LW4 560 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 LUC7LQ9NQ29 371 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 CEP83Q9Y592 693 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 TATP17735 454 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 MCM3P25205 808 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 JAKMIP3Q5VZ66 844 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 FSD1Q9BTV5 496 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 FAM184BQ9ULE4 1060 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 LIG1P18858 919 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 MCM5P33992 734 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 MTHFSP49914 203 aa10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 RNF168Q8IYW5 571 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-218ENST00000513024 TNMDQ9H2S6 317 aa10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 SLC52A1Q9NWF4 448 aa10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 DENND4BO75064 1496 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 MAGI3Q5TCQ9 1506 aa10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 SAMD9Q5K651 1589 aa10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 SERPINC1P01008 464 aa10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 HSPA4P34932 840 aa10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 SMC1AQ14683 1233 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 CNTROBQ8N137 903 aa10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 PPM1EQ8WY54 764 aa10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 HECW1Q76N89 1606 aa10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 SPATA31E1Q6ZUB1 1445 aa10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 POLD1P28340 1107 aa10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 NUP133Q8WUM0 1156 aa10.21□□□□□ -0.77
LIMCH1-218ENST00000513024 PLEKHH2Q8IVE3 1493 aa10.21□□□□□ -0.78
LIMCH1-218ENST00000513024 TXLNAP40222 546 aa10.21□□□□□ -0.78
LIMCH1-218ENST00000513024 PIP4K2AP48426 406 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-218ENST00000513024 PPFIBP1Q86W92 1011 aa10.21□□□□□ -0.78
LIMCH1-218ENST00000513024 DZIP1Q86YF9 867 aaKnown RBP10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms