RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 SLIT3O75094 1523 aa11.25□□□□□ -0.61
SCN1A-207ENST00000507401 MKRN3Q13064 507 aaKnown RBP11.24□□□□□ -0.61
SCN1A-207ENST00000507401 HDGFL2Q7Z4V5 671 aaPredicted RBP11.24□□□□□ -0.61
SCN1A-207ENST00000507401 ARHGEF25Q86VW2 580 aa11.24□□□□□ -0.61
SCN1A-207ENST00000507401 TCP11L2Q8N4U5 519 aa11.24□□□□□ -0.61
SCN1A-207ENST00000507401 TMC1Q8TDI8 760 aa11.24□□□□□ -0.61
SCN1A-207ENST00000507401 SLC12A5Q9H2X9 1139 aa11.24□□□□□ -0.61
SCN1A-207ENST00000507401 SCUBE2Q9NQ36 999 aa11.24□□□□□ -0.61
SCN1A-207ENST00000507401 USP31Q70CQ4 1352 aa11.24□□□□□ -0.61
SCN1A-207ENST00000507401 LMO7Q8WWI1 1683 aa11.24□□□□□ -0.61
SCN1A-207ENST00000507401 FAM196AQ6ZSG2 479 aa11.23□□□□□ -0.61
SCN1A-207ENST00000507401 PIK3C2AO00443 1686 aa11.23□□□□□ -0.61
SCN1A-207ENST00000507401 THSD7AQ9UPZ6 1657 aa11.23□□□□□ -0.61
SCN1A-207ENST00000507401 CD163L1Q9NR16 1453 aa11.22□□□□□ -0.61
SCN1A-207ENST00000507401 USP35Q9P2H5 1018 aa11.22□□□□□ -0.61
SCN1A-207ENST00000507401 NINLQ9Y2I6 1382 aa11.22□□□□□ -0.61
SCN1A-207ENST00000507401 COL5A2P05997 1499 aaPredicted RBP11.21□□□□□ -0.61
SCN1A-207ENST00000507401 CRB1P82279 1406 aa11.21□□□□□ -0.61
SCN1A-207ENST00000507401 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.21□□□□□ -0.61
SCN1A-207ENST00000507401 C11orf95C9JLR9 678 aaPredicted RBP11.21□□□□□ -0.61
SCN1A-207ENST00000507401 BAG6P46379 1132 aa11.21□□□□□ -0.61
SCN1A-207ENST00000507401 GOLGA2Q08379 1002 aa11.21□□□□□ -0.61
SCN1A-207ENST00000507401 PDE3BQ13370 1112 aa11.21□□□□□ -0.61
SCN1A-207ENST00000507401 ZFP91Q96JP5 570 aaPredicted RBP11.21□□□□□ -0.61
SCN1A-207ENST00000507401 AXIN2Q9Y2T1 843 aa11.21□□□□□ -0.61
SCN1A-207ENST00000507401 COL18A1P39060 1754 aa11.21□□□□□ -0.62
SCN1A-207ENST00000507401 MON2Q7Z3U7 1717 aa11.21□□□□□ -0.62
SCN1A-207ENST00000507401 TMF1P82094 1093 aa11.2□□□□□ -0.62
SCN1A-207ENST00000507401 DEFB132Q7Z7B7 95 aa11.2□□□□□ -0.62
SCN1A-207ENST00000507401 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.2□□□□□ -0.62
SCN1A-207ENST00000507401 CDCA7Q9BWT1 371 aaPredicted RBP11.2□□□□□ -0.62
SCN1A-207ENST00000507401 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.2□□□□□ -0.627e-8■■■■□ 19.6
SCN1A-207ENST00000507401 EDC4Q6P2E9 1401 aaKnown RBP11.19□□□□□ -0.62
SCN1A-207ENST00000507401 WDR17Q8IZU2 1322 aa11.19□□□□□ -0.62
SCN1A-207ENST00000507401 ECM2O94769 699 aaPredicted RBP11.19□□□□□ -0.62
SCN1A-207ENST00000507401 CDCA8Q53HL2 280 aa11.19□□□□□ -0.62
SCN1A-207ENST00000507401 TOM1L2Q6ZVM7 507 aa11.19□□□□□ -0.62
SCN1A-207ENST00000507401 ZBTB7CA1YPR0 619 aa11.18□□□□□ -0.62
SCN1A-207ENST00000507401 RGL2O15211 777 aa11.18□□□□□ -0.62
SCN1A-207ENST00000507401 FAM182BQ5T319 152 aa11.18□□□□□ -0.62
SCN1A-207ENST00000507401 NME9Q86XW9 330 aa11.18□□□□□ -0.62
SCN1A-207ENST00000507401 EFCAB3Q8N7B9 438 aa11.18□□□□□ -0.62
SCN1A-207ENST00000507401 CARD10Q9BWT7 1032 aa11.18□□□□□ -0.62
SCN1A-207ENST00000507401 ABCC6O95255 1503 aa11.18□□□□□ -0.62
SCN1A-207ENST00000507401 USP54Q70EL1 1684 aa11.17□□□□□ -0.62
SCN1A-207ENST00000507401 A0A1W2PP64 1363 aa11.17□□□□□ -0.62
SCN1A-207ENST00000507401 USP47Q96K76 1375 aa11.17□□□□□ -0.62
SCN1A-207ENST00000507401 DPY19L2Q6NUT2 758 aa11.17□□□□□ -0.62
SCN1A-207ENST00000507401 NFAT5O94916 1531 aa11.17□□□□□ -0.62
SCN1A-207ENST00000507401 RGPD1P0DJD0 1748 aa11.17□□□□□ -0.62
SCN1A-207ENST00000507401 DISP2A7MBM2 1401 aa11.17□□□□□ -0.62
SCN1A-207ENST00000507401 SOX12O15370 315 aa11.16□□□□□ -0.62
SCN1A-207ENST00000507401 PARP4Q9UKK3 1724 aaKnown RBP11.15□□□□□ -0.62
SCN1A-207ENST00000507401 TRIM37O94972 964 aa11.15□□□□□ -0.62
SCN1A-207ENST00000507401 CSB-PGBD3P0DP91 1061 aa11.15□□□□□ -0.62
SCN1A-207ENST00000507401 EN1Q05925 392 aaPredicted RBP11.15□□□□□ -0.62
SCN1A-207ENST00000507401 DDB1Q16531 1140 aa11.15□□□□□ -0.62
SCN1A-207ENST00000507401 LCE2DQ5TA82 110 aaPredicted RBP11.15□□□□□ -0.62
SCN1A-207ENST00000507401 ANKRD36BQ8N2N9 1353 aa11.15□□□□□ -0.63
SCN1A-207ENST00000507401 PARD3Q8TEW0 1356 aa11.15□□□□□ -0.63
SCN1A-207ENST00000507401 CCDC7Q96M83 1385 aa11.15□□□□□ -0.63
SCN1A-207ENST00000507401 COG3Q96JB2 828 aa11.14□□□□□ -0.63
SCN1A-207ENST00000507401 CAMKK2Q96RR4 588 aa11.14□□□□□ -0.63
SCN1A-207ENST00000507401 RGPD5Q99666 1765 aa11.13□□□□□ -0.63
SCN1A-207ENST00000507401 OVOS2A0A0J9YW53 1432 aa11.13□□□□□ -0.63
SCN1A-207ENST00000507401 OVOS2Q6IE36 1432 aa11.13□□□□□ -0.63
SCN1A-207ENST00000507401 EXOC5O00471 708 aa11.13□□□□□ -0.63
SCN1A-207ENST00000507401 APBA3O96018 575 aa11.13□□□□□ -0.63
SCN1A-207ENST00000507401 IP6K1Q92551 441 aa11.13□□□□□ -0.63
SCN1A-207ENST00000507401 ERBB3P21860 1342 aa11.12□□□□□ -0.63
SCN1A-207ENST00000507401 BCL9O00512 1426 aa11.12□□□□□ -0.63
SCN1A-207ENST00000507401 FYB1O15117 783 aa11.12□□□□□ -0.63
SCN1A-207ENST00000507401 CCER1Q8TC90 406 aaPredicted RBP11.12□□□□□ -0.63
SCN1A-207ENST00000507401 OVOS2A0A0G2JMS6 1433 aa11.11□□□□□ -0.63
SCN1A-207ENST00000507401 PLSCR1O15162 318 aa11.11□□□□□ -0.63
SCN1A-207ENST00000507401 EZH2Q15910 746 aaKnown RBP11.11□□□□□ -0.63
SCN1A-207ENST00000507401 MARCH10Q8NA82 808 aaPredicted RBP11.11□□□□□ -0.63
SCN1A-207ENST00000507401 ANKRD24Q8TF21 1146 aa11.11□□□□□ -0.63
SCN1A-207ENST00000507401 TNS1Q9HBL0 1735 aaKnown RBP11.11□□□□□ -0.63
SCN1A-207ENST00000507401 LTN1O94822 1766 aa11.11□□□□□ -0.63
SCN1A-207ENST00000507401 SLAIN1Q8ND83 568 aa11.1□□□□□ -0.63
SCN1A-207ENST00000507401 BCL11BQ9C0K0 894 aaPredicted RBP11.1□□□□□ -0.63
SCN1A-207ENST00000507401 NLRP2Q9NX02 1062 aa11.1□□□□□ -0.63
SCN1A-207ENST00000507401 IL2RBP14784 551 aa11.09□□□□□ -0.63
SCN1A-207ENST00000507401 L3MBTL3Q96JM7 780 aaPredicted RBP11.09□□□□□ -0.63
SCN1A-207ENST00000507401 MS4A4AQ96JQ5 239 aa11.09□□□□□ -0.63
SCN1A-207ENST00000507401 SRCAPQ6ZRS2 3230 aa11.09□□□□□ -0.63
SCN1A-207ENST00000507401 PEAK1Q9H792 1746 aa11.09□□□□□ -0.63
SCN1A-207ENST00000507401 AMPHP49418 695 aa11.08□□□□□ -0.64
SCN1A-207ENST00000507401 EIF4G2P78344 907 aaKnown RBP eCLIP11.08□□□□□ -0.64
SCN1A-207ENST00000507401 NBPF14Q5TI25 921 aa11.08□□□□□ -0.64
SCN1A-207ENST00000507401 LRRC37A3O60309 1634 aa11.08□□□□□ -0.64
SCN1A-207ENST00000507401 MAP3K19Q56UN5 1328 aa11.08□□□□□ -0.64
SCN1A-207ENST00000507401 WNK3Q9BYP7 1800 aa11.07□□□□□ -0.64
SCN1A-207ENST00000507401 HOXC9P31274 260 aa11.07□□□□□ -0.64
SCN1A-207ENST00000507401 CARD14Q9BXL6 1004 aa11.07□□□□□ -0.64
SCN1A-207ENST00000507401 GGNBP2Q9H3C7 697 aa11.07□□□□□ -0.64
SCN1A-207ENST00000507401 SBF2Q86WG5 1849 aa11.07□□□□□ -0.64
SCN1A-207ENST00000507401 KIF24Q5T7B8 1368 aa11.06□□□□□ -0.64
SCN1A-207ENST00000507401 PSDA5PKW4 1024 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms