RNA–Protein interactions for RNA: ENST00000506924.1

CLCN3-205, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 567 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-205ENST00000506924 RCCD1A6NED2 376 aa13.7□□□□□ -0.22
CLCN3-205ENST00000506924 CFAP70Q5T0N1 1121 aa13.7□□□□□ -0.22
CLCN3-205ENST00000506924 C14orf37Q86TY3 774 aa13.7□□□□□ -0.22
CLCN3-205ENST00000506924 GPCPD1Q9NPB8 672 aa13.7□□□□□ -0.22
CLCN3-205ENST00000506924 STK26Q9P289 416 aa13.7□□□□□ -0.22
CLCN3-205ENST00000506924 DAXXQ9UER7 740 aaPredicted RBP13.7□□□□□ -0.22
CLCN3-205ENST00000506924 PIK3R4Q99570 1358 aa13.7□□□□□ -0.22
CLCN3-205ENST00000506924 NKTRP30414 1462 aaKnown RBP13.69□□□□□ -0.22
CLCN3-205ENST00000506924 C3orf80F5H4A9 247 aa13.69□□□□□ -0.22
CLCN3-205ENST00000506924 NEUROD2Q15784 382 aa13.69□□□□□ -0.22
CLCN3-205ENST00000506924 CDAN1Q8IWY9 1227 aa13.69□□□□□ -0.22
CLCN3-205ENST00000506924 PIK3C2GO75747 1445 aa13.69□□□□□ -0.22
CLCN3-205ENST00000506924 MYOM2P54296 1465 aa13.68□□□□□ -0.22
CLCN3-205ENST00000506924 PARP9Q8IXQ6 854 aa13.68□□□□□ -0.22
CLCN3-205ENST00000506924 TMEM134Q9H6X4 195 aa13.68□□□□□ -0.22
CLCN3-205ENST00000506924 XRN1Q8IZH2 1706 aaKnown RBP13.67□□□□□ -0.22
CLCN3-205ENST00000506924 TOM1O60784 492 aa13.67□□□□□ -0.22
CLCN3-205ENST00000506924 TTLL12Q14166 644 aaPredicted RBP13.67□□□□□ -0.22
CLCN3-205ENST00000506924 ANKRD13DQ6ZTN6 518 aa13.67□□□□□ -0.22
CLCN3-205ENST00000506924 NRXN1Q9ULB1 1477 aa13.67□□□□□ -0.22
CLCN3-205ENST00000506924 MRPL50Q8N5N7 158 aaKnown RBP13.66□□□□□ -0.22
CLCN3-205ENST00000506924 L3MBTL2Q969R5 705 aa13.66□□□□□ -0.22
CLCN3-205ENST00000506924 C14orf93Q9H972 538 aaKnown RBP13.66□□□□□ -0.22
CLCN3-205ENST00000506924 ASXL1Q8IXJ9 1541 aa13.65□□□□□ -0.22
CLCN3-205ENST00000506924 ROBO2Q9HCK4 1378 aa13.65□□□□□ -0.22
CLCN3-205ENST00000506924 MSH6P52701 1360 aa13.64□□□□□ -0.23
CLCN3-205ENST00000506924 SMAPO00193 183 aa13.64□□□□□ -0.23
CLCN3-205ENST00000506924 MDM2Q00987 491 aaPredicted RBP13.64□□□□□ -0.23
CLCN3-205ENST00000506924 GIGYF2Q6Y7W6 1299 aaKnown RBP13.63□□□□□ -0.23
CLCN3-205ENST00000506924 WAPLQ7Z5K2 1190 aa13.63□□□□□ -0.23
CLCN3-205ENST00000506924 KDM4CQ9H3R0 1056 aa13.63□□□□□ -0.23
CLCN3-205ENST00000506924 SEPT9Q9UHD8 586 aaPredicted RBP13.63□□□□□ -0.23
CLCN3-205ENST00000506924 SULF1Q8IWU6 871 aa13.62□□□□□ -0.23
CLCN3-205ENST00000506924 STAC3Q96MF2 364 aa13.62□□□□□ -0.23
CLCN3-205ENST00000506924 YTHDC2Q9H6S0 1430 aaKnown RBP13.62□□□□□ -0.23
CLCN3-205ENST00000506924 LRPPRCP42704 1394 aaKnown RBP13.61□□□□□ -0.23
CLCN3-205ENST00000506924 C19orf44Q9H6X5 657 aa13.61□□□□□ -0.23
CLCN3-205ENST00000506924 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.61□□□□□ -0.23
CLCN3-205ENST00000506924 PLEKHH1Q9ULM0 1364 aa13.6□□□□□ -0.23
CLCN3-205ENST00000506924 ATF3P18847 181 aa13.6□□□□□ -0.23
CLCN3-205ENST00000506924 SLC4A3P48751 1232 aa13.6□□□□□ -0.23
CLCN3-205ENST00000506924 SAFB2Q14151 953 aaKnown RBP eCLIP13.6□□□□□ -0.23
CLCN3-205ENST00000506924 FAM217BQ9NTX9 383 aaPredicted RBP13.6□□□□□ -0.23
CLCN3-205ENST00000506924 TRAK1Q9UPV9 953 aa13.6□□□□□ -0.23
CLCN3-205ENST00000506924 LAMC1P11047 1609 aa13.6□□□□□ -0.23
CLCN3-205ENST00000506924 PTCH1Q13635 1447 aa13.59□□□□□ -0.23
CLCN3-205ENST00000506924 NBPF1Q3BBV0 1214 aa13.59□□□□□ -0.23
CLCN3-205ENST00000506924 ZFRQ96KR1 1074 aaKnown RBP13.59□□□□□ -0.23
CLCN3-205ENST00000506924 REPIN1Q9BWE0 567 aaKnown RBP13.59□□□□□ -0.23
CLCN3-205ENST00000506924 GPBP1L1Q9HC44 474 aaPredicted RBP13.59□□□□□ -0.23
CLCN3-205ENST00000506924 SLAIN2Q9P270 581 aa13.59□□□□□ -0.23
CLCN3-205ENST00000506924 NALCNQ8IZF0 1738 aa13.59□□□□□ -0.23
CLCN3-205ENST00000506924 TONSLQ96HA7 1378 aa13.58□□□□□ -0.23
CLCN3-205ENST00000506924 ABCC11Q96J66 1382 aa13.58□□□□□ -0.23
CLCN3-205ENST00000506924 PRAG1Q86YV5 1406 aa13.58□□□□□ -0.24
CLCN3-205ENST00000506924 NCOA3Q9Y6Q9 1424 aa13.58□□□□□ -0.24
CLCN3-205ENST00000506924 HSPA1LP34931 641 aa13.58□□□□□ -0.24
CLCN3-205ENST00000506924 CCER1Q8TC90 406 aaPredicted RBP13.58□□□□□ -0.24
CLCN3-205ENST00000506924 ADGRB1O14514 1584 aa13.58□□□□□ -0.24
CLCN3-205ENST00000506924 NECTIN2Q92692 538 aa13.57□□□□□ -0.24
CLCN3-205ENST00000506924 DDRGK1Q96HY6 314 aa13.57□□□□□ -0.24
CLCN3-205ENST00000506924 PRAM1Q96QH2 718 aa13.57□□□□□ -0.24
CLCN3-205ENST00000506924 ADGRL3Q9HAR2 1447 aa13.56□□□□□ -0.24
CLCN3-205ENST00000506924 SSTR3P32745 418 aaPredicted RBP13.56□□□□□ -0.24
CLCN3-205ENST00000506924 SLF2Q8IX21 1173 aa13.56□□□□□ -0.24
CLCN3-205ENST00000506924 KNDC1Q76NI1 1749 aa13.56□□□□□ -0.24
CLCN3-205ENST00000506924 TECPR2O15040 1411 aa13.56□□□□□ -0.24
CLCN3-205ENST00000506924 NBPF8Q3BBV2 869 aa13.55□□□□□ -0.24
CLCN3-205ENST00000506924 SWT1Q5T5J6 900 aaKnown RBP13.55□□□□□ -0.24
CLCN3-205ENST00000506924 POGKQ9P215 609 aa13.55□□□□□ -0.24
CLCN3-205ENST00000506924 ROBO1Q9Y6N7 1651 aa13.55□□□□□ -0.24
CLCN3-205ENST00000506924 GOLGA8CPA6NN73 597 aa13.54□□□□□ -0.24
CLCN3-205ENST00000506924 NLRP7Q8WX94 980 aa13.54□□□□□ -0.24
CLCN3-205ENST00000506924 ANKK1Q8NFD2 765 aa13.53□□□□□ -0.24
CLCN3-205ENST00000506924 HIRIP3Q9BW71 556 aaPredicted RBP13.53□□□□□ -0.24
CLCN3-205ENST00000506924 MS4A1P11836 297 aa13.52□□□□□ -0.25
CLCN3-205ENST00000506924 SAMD7Q7Z3H4 446 aa13.52□□□□□ -0.25
CLCN3-205ENST00000506924 LRCH3Q96II8 777 aa13.52□□□□□ -0.25
CLCN3-205ENST00000506924 MST1RQ04912 1400 aa13.52□□□□□ -0.25
CLCN3-205ENST00000506924 FAM135BQ49AJ0 1406 aa13.52□□□□□ -0.25
CLCN3-205ENST00000506924 KIAA1210Q9ULL0 1709 aa13.52□□□□□ -0.25
CLCN3-205ENST00000506924 DCCP43146 1447 aa13.51□□□□□ -0.25
CLCN3-205ENST00000506924 CD46P15529 392 aa13.51□□□□□ -0.25
CLCN3-205ENST00000506924 TMEM132AQ24JP5 1023 aa13.51□□□□□ -0.25
CLCN3-205ENST00000506924 DDX17Q92841 729 aaKnown RBP13.51□□□□□ -0.25
CLCN3-205ENST00000506924 SIRT1Q96EB6 747 aa13.51□□□□□ -0.25
CLCN3-205ENST00000506924 TRPM1Q7Z4N2 1603 aa13.5□□□□□ -0.25
CLCN3-205ENST00000506924 DLC1Q96QB1 1528 aa13.5□□□□□ -0.25
CLCN3-205ENST00000506924 BRINP3Q76B58 766 aa13.5□□□□□ -0.25
CLCN3-205ENST00000506924 ORAI2Q96SN7 254 aa13.5□□□□□ -0.25
CLCN3-205ENST00000506924 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.5□□□□□ -0.25
CLCN3-205ENST00000506924 ROCK2O75116 1388 aaKnown RBP13.49□□□□□ -0.25
CLCN3-205ENST00000506924 SOWAHBA6NEL2 793 aa13.49□□□□□ -0.25
CLCN3-205ENST00000506924 ARHGEF28Q8N1W1 1705 aaKnown RBP13.49□□□□□ -0.25
CLCN3-205ENST00000506924 C1orf167Q5SNV9 1468 aa13.48□□□□□ -0.25
CLCN3-205ENST00000506924 DIXDC1Q155Q3 683 aa13.48□□□□□ -0.25
CLCN3-205ENST00000506924 CDC42BPGQ6DT37 1551 aa13.47□□□□□ -0.25
CLCN3-205ENST00000506924 DDX11L8A8MPP1 907 aa13.47□□□□□ -0.25
CLCN3-205ENST00000506924 ESCO1Q5FWF5 840 aa13.47□□□□□ -0.25
CLCN3-205ENST00000506924 WNT2BQ93097 391 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms