RNA–Protein interactions for RNA: ENST00000497089.1

HOXA9-206, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 1,393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-206ENST00000497089 NRXN3Q9Y4C0 1643 aa9.55□□□□□ -0.88
HOXA9-206ENST00000497089 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.55□□□□□ -0.88
HOXA9-206ENST00000497089 PIP4K2BP78356 416 aa9.55□□□□□ -0.88
HOXA9-206ENST00000497089 PROSER2Q86WR7 435 aaPredicted RBP9.55□□□□□ -0.88
HOXA9-206ENST00000497089 STAC3Q96MF2 364 aa9.55□□□□□ -0.88
HOXA9-206ENST00000497089 KIF1BO60333 1816 aa9.55□□□□□ -0.88
HOXA9-206ENST00000497089 DNAJB2P25686 324 aa9.54□□□□□ -0.88
HOXA9-206ENST00000497089 GIGYF2Q6Y7W6 1299 aaKnown RBP9.54□□□□□ -0.88
HOXA9-206ENST00000497089 FAM135BQ49AJ0 1406 aa9.54□□□□□ -0.88
HOXA9-206ENST00000497089 NEXMIFQ5QGS0 1516 aa9.54□□□□□ -0.88
HOXA9-206ENST00000497089 C14orf37Q86TY3 774 aa9.53□□□□□ -0.88
HOXA9-206ENST00000497089 TRIM52Q96A61 297 aa9.53□□□□□ -0.88
HOXA9-206ENST00000497089 GPCPD1Q9NPB8 672 aa9.53□□□□□ -0.88
HOXA9-206ENST00000497089 DISP3Q9P2K9 1392 aa9.53□□□□□ -0.88
HOXA9-206ENST00000497089 MDM2Q00987 491 aaPredicted RBP9.52□□□□□ -0.88
HOXA9-206ENST00000497089 NLRP7Q8WX94 980 aa9.52□□□□□ -0.88
HOXA9-206ENST00000497089 ZFRQ96KR1 1074 aaKnown RBP9.52□□□□□ -0.88
HOXA9-206ENST00000497089 TMEM134Q9H6X4 195 aa9.52□□□□□ -0.88
HOXA9-206ENST00000497089 XRN1Q8IZH2 1706 aaKnown RBP9.52□□□□□ -0.89
HOXA9-206ENST00000497089 NUTM2DQ5VT03 806 aaPredicted RBP9.51□□□□□ -0.89
HOXA9-206ENST00000497089 MSH6P52701 1360 aa9.51□□□□□ -0.89
HOXA9-206ENST00000497089 PTPRUQ92729 1446 aa9.51□□□□□ -0.89
HOXA9-206ENST00000497089 RPGRIP1LQ68CZ1 1315 aa9.5□□□□□ -0.89
HOXA9-206ENST00000497089 MED1Q15648 1581 aaPredicted RBP9.5□□□□□ -0.89
HOXA9-206ENST00000497089 ZNF326Q5BKZ1 582 aaKnown RBP9.5□□□□□ -0.89
HOXA9-206ENST00000497089 SPNS2Q8IVW8 549 aa9.5□□□□□ -0.89
HOXA9-206ENST00000497089 ARXQ96QS3 562 aa9.5□□□□□ -0.89
HOXA9-206ENST00000497089 TMUB1Q9BVT8 246 aa9.5□□□□□ -0.89
HOXA9-206ENST00000497089 ROBO1Q9Y6N7 1651 aa9.49□□□□□ -0.89
HOXA9-206ENST00000497089 PPLO60437 1756 aa9.49□□□□□ -0.89
HOXA9-206ENST00000497089 SETD5Q9C0A6 1442 aa9.49□□□□□ -0.89
HOXA9-206ENST00000497089 PLEKHG3A1L390 1219 aa9.49□□□□□ -0.89
HOXA9-206ENST00000497089 GOLGA8CPA6NN73 597 aa9.49□□□□□ -0.89
HOXA9-206ENST00000497089 SAMD7Q7Z3H4 446 aa9.49□□□□□ -0.89
HOXA9-206ENST00000497089 MPHOSPH9Q99550 1183 aa9.49□□□□□ -0.89
HOXA9-206ENST00000497089 AMOTL2Q9Y2J4 779 aa9.49□□□□□ -0.89
HOXA9-206ENST00000497089 SETD1AO15047 1707 aaKnown RBP9.49□□□□□ -0.89
HOXA9-206ENST00000497089 CLSPNQ9HAW4 1339 aa9.48□□□□□ -0.89
HOXA9-206ENST00000497089 SPATA31E1Q6ZUB1 1445 aa9.48□□□□□ -0.89
HOXA9-206ENST00000497089 PRAG1Q86YV5 1406 aa9.48□□□□□ -0.89
HOXA9-206ENST00000497089 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.48□□□□□ -0.89
HOXA9-206ENST00000497089 MS4A1P11836 297 aa9.48□□□□□ -0.89
HOXA9-206ENST00000497089 SWT1Q5T5J6 900 aaKnown RBP9.48□□□□□ -0.89
HOXA9-206ENST00000497089 REPIN1Q9BWE0 567 aaKnown RBP9.48□□□□□ -0.89
HOXA9-206ENST00000497089 C19orf44Q9H6X5 657 aa9.48□□□□□ -0.89
HOXA9-206ENST00000497089 SLAIN2Q9P270 581 aa9.48□□□□□ -0.89
HOXA9-206ENST00000497089 METP08581 1390 aa9.48□□□□□ -0.89
HOXA9-206ENST00000497089 CCDC144AA2RUR9 1427 aa9.47□□□□□ -0.89
HOXA9-206ENST00000497089 DCCP43146 1447 aa9.47□□□□□ -0.89
HOXA9-206ENST00000497089 SSTR3P32745 418 aaPredicted RBP9.47□□□□□ -0.89
HOXA9-206ENST00000497089 ILDR2Q71H61 639 aa9.47□□□□□ -0.89
HOXA9-206ENST00000497089 ANKK1Q8NFD2 765 aa9.46□□□□□ -0.9
HOXA9-206ENST00000497089 WNT2BQ93097 391 aa9.46□□□□□ -0.9
HOXA9-206ENST00000497089 ANP32EQ9BTT0 268 aa9.46□□□□□ -0.9
HOXA9-206ENST00000497089 IFT172Q9UG01 1749 aa9.46□□□□□ -0.9
HOXA9-206ENST00000497089 PTCH1Q13635 1447 aa9.45□□□□□ -0.9
HOXA9-206ENST00000497089 RAB3GAP2Q9H2M9 1393 aa9.45□□□□□ -0.9
HOXA9-206ENST00000497089 LRCH3Q96II8 777 aa9.45□□□□□ -0.9
HOXA9-206ENST00000497089 GOPCQ9HD26 462 aa9.45□□□□□ -0.9
HOXA9-206ENST00000497089 ANKRD30BQ9BXX2 1392 aa9.44□□□□□ -0.9
HOXA9-206ENST00000497089 SOWAHBA6NEL2 793 aa9.44□□□□□ -0.9
HOXA9-206ENST00000497089 FAM217BQ9NTX9 383 aaPredicted RBP9.44□□□□□ -0.9
HOXA9-206ENST00000497089 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.44□□□□□ -0.9
HOXA9-206ENST00000497089 AHDC1Q5TGY3 1603 aaPredicted RBP9.44□□□□□ -0.9
HOXA9-206ENST00000497089 ADGRL3Q9HAR2 1447 aa9.43□□□□□ -0.9
HOXA9-206ENST00000497089 ATF3P18847 181 aa9.43□□□□□ -0.9
HOXA9-206ENST00000497089 SLC4A3P48751 1232 aa9.43□□□□□ -0.9
HOXA9-206ENST00000497089 SULF1Q8IWU6 871 aa9.43□□□□□ -0.9
HOXA9-206ENST00000497089 SLF2Q8IX21 1173 aa9.43□□□□□ -0.9
HOXA9-206ENST00000497089 RSPH6AQ9H0K4 717 aa9.43□□□□□ -0.9
HOXA9-206ENST00000497089 COL16A1Q07092 1604 aaPredicted RBP9.43□□□□□ -0.9
HOXA9-206ENST00000497089 PHLPP1O60346 1717 aa9.42□□□□□ -0.9
HOXA9-206ENST00000497089 NALCNQ8IZF0 1738 aa9.42□□□□□ -0.9
HOXA9-206ENST00000497089 KCTD12Q96CX2 325 aaKnown RBP9.42□□□□□ -0.9
HOXA9-206ENST00000497089 PCMTD1Q96MG8 357 aaPredicted RBP9.42□□□□□ -0.9
HOXA9-206ENST00000497089 BEGAINQ9BUH8 593 aa9.42□□□□□ -0.9
HOXA9-206ENST00000497089 MST1RQ04912 1400 aa9.42□□□□□ -0.9
HOXA9-206ENST00000497089 ROBO2Q9HCK4 1378 aa9.42□□□□□ -0.9
HOXA9-206ENST00000497089 ADGRF5Q8IZF2 1346 aa9.41□□□□□ -0.9
HOXA9-206ENST00000497089 DDX11L8A8MPP1 907 aa9.41□□□□□ -0.9
HOXA9-206ENST00000497089 SOCS7O14512 581 aa9.41□□□□□ -0.9
HOXA9-206ENST00000497089 BCAMP50895 628 aa9.41□□□□□ -0.9
HOXA9-206ENST00000497089 TECPR2O15040 1411 aa9.41□□□□□ -0.9
HOXA9-206ENST00000497089 PIK3C2GO75747 1445 aa9.41□□□□□ -0.9
HOXA9-206ENST00000497089 RNF40O75150 1001 aa9.4□□□□□ -0.9
HOXA9-206ENST00000497089 THSD4Q6ZMP0 1018 aa9.4□□□□□ -0.9
HOXA9-206ENST00000497089 NRXN1Q9ULB1 1477 aa9.4□□□□□ -0.9
HOXA9-206ENST00000497089 JCADQ9P266 1359 aa9.4□□□□□ -0.9
HOXA9-206ENST00000497089 ASXL1Q8IXJ9 1541 aa9.4□□□□□ -0.91
HOXA9-206ENST00000497089 MYOM2P54296 1465 aa9.39□□□□□ -0.91
HOXA9-206ENST00000497089 RGL3Q3MIN7 710 aa9.39□□□□□ -0.91
HOXA9-206ENST00000497089 BRINP3Q76B58 766 aa9.39□□□□□ -0.91
HOXA9-206ENST00000497089 NHSL1Q5SYE7 1610 aa9.39□□□□□ -0.91
HOXA9-206ENST00000497089 KNDC1Q76NI1 1749 aa9.39□□□□□ -0.91
HOXA9-206ENST00000497089 SHPRHQ149N8 1683 aa9.39□□□□□ -0.91
HOXA9-206ENST00000497089 LAMC1P11047 1609 aa9.39□□□□□ -0.91
HOXA9-206ENST00000497089 SLC10A3P09131 477 aa9.38□□□□□ -0.91
HOXA9-206ENST00000497089 CD46P15529 392 aa9.38□□□□□ -0.91
HOXA9-206ENST00000497089 SH3D19Q5HYK7 790 aa9.38□□□□□ -0.91
HOXA9-206ENST00000497089 TSR3Q9UJK0 312 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms