RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 ERICH3Q5RHP9 1530 aa8.32□□□□□ -1.08
CSMD3-208ENST00000497026 CLASP1Q7Z460 1538 aa8.32□□□□□ -1.08
CSMD3-208ENST00000497026 LORP23490 312 aaPredicted RBP8.31□□□□□ -1.08
CSMD3-208ENST00000497026 PNMA1Q8ND90 353 aa8.31□□□□□ -1.08
CSMD3-208ENST00000497026 GJD4Q96KN9 370 aaPredicted RBP8.31□□□□□ -1.08
CSMD3-208ENST00000497026 SNRKQ9NRH2 765 aa8.31□□□□□ -1.08
CSMD3-208ENST00000497026 ARHGEF11O15085 1522 aa8.3□□□□□ -1.08
CSMD3-208ENST00000497026 PPP1R26Q5T8A7 1209 aaPredicted RBP8.3□□□□□ -1.08
CSMD3-208ENST00000497026 VEGFBP49765 207 aa8.29□□□□□ -1.08
CSMD3-208ENST00000497026 CBLBQ13191 982 aa8.29□□□□□ -1.08
CSMD3-208ENST00000497026 DZIP3Q86Y13 1208 aaKnown RBP8.29□□□□□ -1.08
CSMD3-208ENST00000497026 BMP2P12643 396 aa8.29□□□□□ -1.08
CSMD3-208ENST00000497026 INTS6LQ5JSJ4 861 aaKnown RBP8.29□□□□□ -1.08
CSMD3-208ENST00000497026 GPSM3Q9Y4H4 160 aa8.29□□□□□ -1.08
CSMD3-208ENST00000497026 EMILIN1Q9Y6C2 1016 aa8.29□□□□□ -1.08
CSMD3-208ENST00000497026 GRIN2AQ12879 1464 aa8.28□□□□□ -1.08
CSMD3-208ENST00000497026 MEIOBQ8N635 442 aa8.28□□□□□ -1.08
CSMD3-208ENST00000497026 MTMR14Q8NCE2 650 aa8.28□□□□□ -1.08
CSMD3-208ENST00000497026 TMPRSS4Q9NRS4 437 aa8.28□□□□□ -1.08
CSMD3-208ENST00000497026 CEP170Q5SW79 1584 aa8.27□□□□□ -1.09
CSMD3-208ENST00000497026 FHAD1B1AJZ9 1412 aa8.27□□□□□ -1.09
CSMD3-208ENST00000497026 LINC00528Q8N1L1 170 aa8.27□□□□□ -1.09
CSMD3-208ENST00000497026 CHMP7Q8WUX9 453 aaPredicted RBP8.27□□□□□ -1.09
CSMD3-208ENST00000497026 PCDHB9Q9Y5E1 797 aa8.27□□□□□ -1.09
CSMD3-208ENST00000497026 NUP160Q12769 1436 aa8.26□□□□□ -1.09
CSMD3-208ENST00000497026 UPP2O95045 317 aa8.26□□□□□ -1.09
CSMD3-208ENST00000497026 FBXO45P0C2W1 286 aa8.26□□□□□ -1.09
CSMD3-208ENST00000497026 AGBL1Q96MI9 1066 aa8.26□□□□□ -1.09
CSMD3-208ENST00000497026 PGPEP1Q9NXJ5 209 aa8.26□□□□□ -1.09
CSMD3-208ENST00000497026 CDV3Q9UKY7 258 aaKnown RBP8.26□□□□□ -1.09
CSMD3-208ENST00000497026 ZBBXA8MT70 800 aa8.25□□□□□ -1.09
CSMD3-208ENST00000497026 KCNMA1Q12791 1236 aa8.25□□□□□ -1.09
CSMD3-208ENST00000497026 BANK1Q8NDB2 785 aa8.25□□□□□ -1.09
CSMD3-208ENST00000497026 KIF27Q86VH2 1401 aa8.25□□□□□ -1.09
CSMD3-208ENST00000497026 ARAP1Q96P48 1450 aa8.24□□□□□ -1.09
CSMD3-208ENST00000497026 CUL7Q14999 1698 aa8.24□□□□□ -1.09
CSMD3-208ENST00000497026 H3BM21 787 aa8.24□□□□□ -1.09
CSMD3-208ENST00000497026 MAN1A2O60476 641 aa8.24□□□□□ -1.09
CSMD3-208ENST00000497026 NBPF20Q3BBV1 942 aa8.24□□□□□ -1.09
CSMD3-208ENST00000497026 ERVH48-1M5A8F1 160 aa8.23□□□□□ -1.09
CSMD3-208ENST00000497026 TSEN34Q9BSV6 310 aaKnown RBP8.23□□□□□ -1.09
CSMD3-208ENST00000497026 IGF1RP08069 1367 aa8.23□□□□□ -1.09
CSMD3-208ENST00000497026 GPR37L1O60883 481 aa8.22□□□□□ -1.09
CSMD3-208ENST00000497026 GIGYF1O75420 1035 aaPredicted RBP8.22□□□□□ -1.09
CSMD3-208ENST00000497026 RELBQ01201 579 aa8.22□□□□□ -1.09
CSMD3-208ENST00000497026 DHX9Q08211 1270 aaKnown RBP8.22□□□□□ -1.09
CSMD3-208ENST00000497026 ZNF784Q8NCA9 323 aaPredicted RBP8.22□□□□□ -1.09
CSMD3-208ENST00000497026 RUSC2Q8N2Y8 1516 aa8.22□□□□□ -1.09
CSMD3-208ENST00000497026 SHROOM2Q13796 1616 aa8.22□□□□□ -1.09
CSMD3-208ENST00000497026 FIGNL2A6NMB9 653 aa8.21□□□□□ -1.09
CSMD3-208ENST00000497026 ERCC6L2Q5T890 1561 aa8.21□□□□□ -1.09
CSMD3-208ENST00000497026 NDUFB9Q9Y6M9 179 aa8.21□□□□□ -1.09
CSMD3-208ENST00000497026 ADD1P35611 737 aaKnown RBP8.2□□□□□ -1.1
CSMD3-208ENST00000497026 Q6ZVU0 165 aa8.2□□□□□ -1.1
CSMD3-208ENST00000497026 CYLDQ9NQC7 956 aa8.2□□□□□ -1.1
CSMD3-208ENST00000497026 DNMT3LQ9UJW3 386 aa8.2□□□□□ -1.1
CSMD3-208ENST00000497026 TBC1D2BQ9UPU7 963 aa8.2□□□□□ -1.1
CSMD3-208ENST00000497026 SOS2Q07890 1332 aaPredicted RBP8.2□□□□□ -1.1
CSMD3-208ENST00000497026 ESPNB1AK53 854 aa8.2□□□□□ -1.1
CSMD3-208ENST00000497026 NR1H3Q13133 447 aa8.2□□□□□ -1.1
CSMD3-208ENST00000497026 KCTD17Q8N5Z5 321 aa8.2□□□□□ -1.1
CSMD3-208ENST00000497026 ZNF395Q9H8N7 513 aaPredicted RBP8.2□□□□□ -1.1
CSMD3-208ENST00000497026 INSM2Q96T92 566 aaPredicted RBP8.19□□□□□ -1.1
CSMD3-208ENST00000497026 TTLL8A6PVC2 850 aa8.18□□□□□ -1.1
CSMD3-208ENST00000497026 TMEM151AQ8N4L1 468 aa8.18□□□□□ -1.1
CSMD3-208ENST00000497026 CARMIL1Q5VZK9 1371 aa8.17□□□□□ -1.1
CSMD3-208ENST00000497026 ERBB4Q15303 1308 aa8.17□□□□□ -1.1
CSMD3-208ENST00000497026 LILRA1O75019 489 aa8.17□□□□□ -1.1
CSMD3-208ENST00000497026 CTSOP43234 321 aaPredicted RBP8.17□□□□□ -1.1
CSMD3-208ENST00000497026 SPINT1O43278 529 aa8.16□□□□□ -1.1
CSMD3-208ENST00000497026 CYB5RLQ6IPT4 315 aa8.16□□□□□ -1.1
CSMD3-208ENST00000497026 APBB1O00213 710 aa8.15□□□□□ -1.1
CSMD3-208ENST00000497026 ADH1AP07327 375 aa8.15□□□□□ -1.1
CSMD3-208ENST00000497026 POLMQ9NP87 494 aaPredicted RBP8.15□□□□□ -1.1
CSMD3-208ENST00000497026 KIAA0586Q9BVV6 1533 aa8.15□□□□□ -1.11
CSMD3-208ENST00000497026 KDF1Q8NAX2 398 aaPredicted RBP8.14□□□□□ -1.11
CSMD3-208ENST00000497026 GDPD2Q9HCC8 539 aa8.14□□□□□ -1.11
CSMD3-208ENST00000497026 RNF225M0QZC1 329 aaPredicted RBP8.13□□□□□ -1.11
CSMD3-208ENST00000497026 PPFIA3O75145 1194 aa8.13□□□□□ -1.11
CSMD3-208ENST00000497026 ABL2P42684 1182 aa8.13□□□□□ -1.11
CSMD3-208ENST00000497026 SEPT12Q8IYM1 358 aa8.13□□□□□ -1.11
CSMD3-208ENST00000497026 RAPGEF2Q9Y4G8 1499 aa8.13□□□□□ -1.11
CSMD3-208ENST00000497026 PRG4Q92954 1404 aaPredicted RBP8.13□□□□□ -1.11
CSMD3-208ENST00000497026 SOCS7O14512 581 aa8.12□□□□□ -1.11
CSMD3-208ENST00000497026 PTGIRP43119 386 aa8.12□□□□□ -1.11
CSMD3-208ENST00000497026 IRF5Q13568 498 aa8.12□□□□□ -1.11
CSMD3-208ENST00000497026 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.12□□□□□ -1.11
CSMD3-208ENST00000497026 ZNF330Q9Y3S2 320 aaPredicted RBP8.12□□□□□ -1.11
CSMD3-208ENST00000497026 PCDHB11Q9Y5F2 797 aa8.12□□□□□ -1.11
CSMD3-208ENST00000497026 IQGAP2Q13576 1575 aa8.12□□□□□ -1.11
CSMD3-208ENST00000497026 GDF11O95390 407 aa8.12□□□□□ -1.11
CSMD3-208ENST00000497026 SCTRP47872 440 aa8.12□□□□□ -1.11
CSMD3-208ENST00000497026 PTSQ03393 145 aa8.12□□□□□ -1.11
CSMD3-208ENST00000497026 PRXQ9BXM0 1461 aa8.11□□□□□ -1.11
CSMD3-208ENST00000497026 CTTNBP2Q8WZ74 1663 aa8.11□□□□□ -1.11
CSMD3-208ENST00000497026 VSIG8P0DPA2 414 aa8.11□□□□□ -1.11
CSMD3-208ENST00000497026 VAC14Q08AM6 782 aa8.11□□□□□ -1.11
CSMD3-208ENST00000497026 GSK3AP49840 483 aa8.1□□□□□ -1.11
CSMD3-208ENST00000497026 FOXD4L5Q5VV16 416 aaPredicted RBP8.1□□□□□ -1.11
CSMD3-208ENST00000497026 RNF217Q8TC41 542 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms