RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 INSM2Q96T92 566 aaPredicted RBP11.94□□□□□ -0.5
SF3B1-212ENST00000496458 OSBPL3Q9H4L5 887 aa11.94□□□□□ -0.5
SF3B1-212ENST00000496458 CHIC2Q9UKJ5 165 aa11.94□□□□□ -0.5
SF3B1-212ENST00000496458 CYP2U1Q7Z449 544 aa11.93□□□□□ -0.5
SF3B1-212ENST00000496458 GLMNQ92990 594 aa11.93□□□□□ -0.5
SF3B1-212ENST00000496458 SOS2Q07890 1332 aaPredicted RBP11.92□□□□□ -0.5
SF3B1-212ENST00000496458 TTLL8A6PVC2 850 aa11.92□□□□□ -0.5
SF3B1-212ENST00000496458 MAN1A2O60476 641 aa11.92□□□□□ -0.5
SF3B1-212ENST00000496458 SKIP12755 728 aa11.92□□□□□ -0.5
SF3B1-212ENST00000496458 MAP7D1Q3KQU3 841 aa11.92□□□□□ -0.5
SF3B1-212ENST00000496458 POLMQ9NP87 494 aaPredicted RBP11.92□□□□□ -0.5
SF3B1-212ENST00000496458 TRAK2O60296 914 aa11.91□□□□□ -0.5
SF3B1-212ENST00000496458 CTSOP43234 321 aaPredicted RBP11.91□□□□□ -0.5
SF3B1-212ENST00000496458 USP4Q13107 963 aa11.9□□□□□ -0.5
SF3B1-212ENST00000496458 UCN2Q96RP3 112 aa11.9□□□□□ -0.5
SF3B1-212ENST00000496458 DNMT3LQ9UJW3 386 aa11.9□□□□□ -0.5
SF3B1-212ENST00000496458 ZNF775Q96BV0 537 aaPredicted RBP11.89□□□□□ -0.51
SF3B1-212ENST00000496458 ARHGEF10LQ9HCE6 1279 aa11.89□□□□□ -0.51
SF3B1-212ENST00000496458 FIGNL2A6NMB9 653 aa11.88□□□□□ -0.51
SF3B1-212ENST00000496458 MEN1O00255 615 aa11.88□□□□□ -0.51
SF3B1-212ENST00000496458 NFATC2IPQ8NCF5 419 aa11.88□□□□□ -0.51
SF3B1-212ENST00000496458 A0A1W2PRU2 124 aa11.87□□□□□ -0.51
SF3B1-212ENST00000496458 SIRT1Q96EB6 747 aa11.87□□□□□ -0.51
SF3B1-212ENST00000496458 CALR3Q96L12 384 aaKnown RBP11.87□□□□□ -0.51
SF3B1-212ENST00000496458 RAB6BQ9NRW1 208 aa11.87□□□□□ -0.51
SF3B1-212ENST00000496458 USP17L5A8MUK1 530 aa11.86□□□□□ -0.51
SF3B1-212ENST00000496458 FOXD4L5Q5VV16 416 aaPredicted RBP11.86□□□□□ -0.51
SF3B1-212ENST00000496458 TBC1D9Q6ZT07 1266 aa11.86□□□□□ -0.51
SF3B1-212ENST00000496458 DEPDC4Q8N2C3 294 aa11.86□□□□□ -0.51
SF3B1-212ENST00000496458 ZMYND15Q9H091 742 aa11.86□□□□□ -0.51
SF3B1-212ENST00000496458 ZNF777Q9ULD5 760 aaPredicted RBP11.86□□□□□ -0.51
SF3B1-212ENST00000496458 NCOA4Q13772 614 aa11.85□□□□□ -0.51
SF3B1-212ENST00000496458 EML3Q32P44 896 aa11.85□□□□□ -0.51
SF3B1-212ENST00000496458 RNF217Q8TC41 542 aa11.85□□□□□ -0.51
SF3B1-212ENST00000496458 GNRH1P01148 92 aa11.84□□□□□ -0.51
SF3B1-212ENST00000496458 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.84□□□□□ -0.513e-13■■■■■ 52.1
SF3B1-212ENST00000496458 CLN3Q13286 438 aa11.83□□□□□ -0.52
SF3B1-212ENST00000496458 NLRP3Q96P20 1036 aa11.83□□□□□ -0.52
SF3B1-212ENST00000496458 ATP9BO43861 1147 aa11.82□□□□□ -0.52
SF3B1-212ENST00000496458 STAU1O95793 577 aaKnown RBP11.82□□□□□ -0.52
SF3B1-212ENST00000496458 USP17L3A6NCW0 530 aa11.81□□□□□ -0.52
SF3B1-212ENST00000496458 USP17L4A6NCW7 530 aa11.81□□□□□ -0.52
SF3B1-212ENST00000496458 RNF144AP50876 292 aaPredicted RBP11.81□□□□□ -0.52
SF3B1-212ENST00000496458 USP17L2Q6R6M4 530 aa11.81□□□□□ -0.52
SF3B1-212ENST00000496458 USP17L1Q7RTZ2 530 aa11.81□□□□□ -0.52
SF3B1-212ENST00000496458 NOD1Q9Y239 953 aa11.81□□□□□ -0.52
SF3B1-212ENST00000496458 LZTS3O60299 673 aaPredicted RBP11.8□□□□□ -0.52
SF3B1-212ENST00000496458 IL2RAP01589 272 aa11.8□□□□□ -0.52
SF3B1-212ENST00000496458 CNKSR1Q969H4 720 aa11.8□□□□□ -0.52
SF3B1-212ENST00000496458 NXF1Q9UBU9 619 aaKnown RBP11.8□□□□□ -0.52
SF3B1-212ENST00000496458 VEGFBP49765 207 aa11.79□□□□□ -0.52
SF3B1-212ENST00000496458 ESCO1Q5FWF5 840 aa11.79□□□□□ -0.52
SF3B1-212ENST00000496458 LYSMD3Q7Z3D4 306 aa11.79□□□□□ -0.52
SF3B1-212ENST00000496458 ESYT1Q9BSJ8 1104 aa11.79□□□□□ -0.52
SF3B1-212ENST00000496458 ETNK1Q9HBU6 452 aa11.79□□□□□ -0.52
SF3B1-212ENST00000496458 TFIP11Q9UBB9 837 aaKnown RBP11.79□□□□□ -0.52
SF3B1-212ENST00000496458 TERTO14746 1132 aaKnown RBP11.78□□□□□ -0.52
SF3B1-212ENST00000496458 GPC1P35052 558 aa11.78□□□□□ -0.52
SF3B1-212ENST00000496458 SLC27A3Q5K4L6 730 aa11.78□□□□□ -0.52
SF3B1-212ENST00000496458 PRICKLE2Q7Z3G6 844 aa11.78□□□□□ -0.52
SF3B1-212ENST00000496458 C14orf37Q86TY3 774 aa11.78□□□□□ -0.52
SF3B1-212ENST00000496458 PLEKHM2Q8IWE5 1019 aa11.78□□□□□ -0.52
SF3B1-212ENST00000496458 PALM3A6NDB9 673 aaPredicted RBP11.77□□□□□ -0.53
SF3B1-212ENST00000496458 GTF2IP78347 998 aa11.77□□□□□ -0.53
SF3B1-212ENST00000496458 PTSQ03393 145 aa11.77□□□□□ -0.53
SF3B1-212ENST00000496458 SCNN1DP51172 638 aa11.76□□□□□ -0.53
SF3B1-212ENST00000496458 GDF10P55107 478 aa11.76□□□□□ -0.53
SF3B1-212ENST00000496458 PSME1Q06323 249 aa11.76□□□□□ -0.53
SF3B1-212ENST00000496458 XAGE2Q96GT9 111 aa11.76□□□□□ -0.53
SF3B1-212ENST00000496458 PPP1R12CQ9BZL4 782 aa11.76□□□□□ -0.53
SF3B1-212ENST00000496458 PCDHGA11Q9Y5H2 935 aa11.76□□□□□ -0.53
SF3B1-212ENST00000496458 MAFBQ9Y5Q3 323 aaPredicted RBP11.76□□□□□ -0.53
SF3B1-212ENST00000496458 RHOQP17081 205 aa11.75□□□□□ -0.53
SF3B1-212ENST00000496458 CENPCQ03188 943 aa11.75□□□□□ -0.53
SF3B1-212ENST00000496458 NFX1Q12986 1120 aaKnown RBP11.75□□□□□ -0.53
SF3B1-212ENST00000496458 GRIP2Q9C0E4 1043 aa11.74□□□□□ -0.53
SF3B1-212ENST00000496458 HRH3Q9Y5N1 445 aa11.74□□□□□ -0.53
SF3B1-212ENST00000496458 WFS1O76024 890 aa11.73□□□□□ -0.53
SF3B1-212ENST00000496458 INHAP05111 366 aa11.73□□□□□ -0.53
SF3B1-212ENST00000496458 TRIM50Q86XT4 487 aa11.73□□□□□ -0.53
SF3B1-212ENST00000496458 MKRN1Q9UHC7 482 aaKnown RBP11.73□□□□□ -0.53
SF3B1-212ENST00000496458 PPFIA3O75145 1194 aa11.72□□□□□ -0.53
SF3B1-212ENST00000496458 TLR1Q15399 786 aa11.72□□□□□ -0.53
SF3B1-212ENST00000496458 TREML4Q6UXN2 200 aa11.72□□□□□ -0.53
SF3B1-212ENST00000496458 NPAS3Q8IXF0 933 aa11.72□□□□□ -0.53
SF3B1-212ENST00000496458 TMEM229AB2RXF0 380 aa11.71□□□□□ -0.53
SF3B1-212ENST00000496458 H3BM21 787 aa11.71□□□□□ -0.53
SF3B1-212ENST00000496458 POU4F2Q12837 409 aa11.71□□□□□ -0.53
SF3B1-212ENST00000496458 CCDC155Q8N6L0 562 aa11.71□□□□□ -0.53
SF3B1-212ENST00000496458 SLC16A10Q8TF71 515 aa11.71□□□□□ -0.53
SF3B1-212ENST00000496458 ZSCAN10Q96SZ4 725 aaPredicted RBP11.71□□□□□ -0.53
SF3B1-212ENST00000496458 FHDC1Q9C0D6 1143 aaPredicted RBP11.71□□□□□ -0.53
SF3B1-212ENST00000496458 SERTAD1Q9UHV2 236 aa11.71□□□□□ -0.53
SF3B1-212ENST00000496458 SENP3-EIF4A1A0A087X0R7 540 aa11.7□□□□□ -0.54
SF3B1-212ENST00000496458 SLC35F4A4IF30 521 aa11.7□□□□□ -0.54
SF3B1-212ENST00000496458 LMOD1P29536 600 aaPredicted RBP11.7□□□□□ -0.54
SF3B1-212ENST00000496458 ATP1A2P50993 1020 aa11.7□□□□□ -0.54
SF3B1-212ENST00000496458 CLDN10P78369 228 aa11.7□□□□□ -0.54
SF3B1-212ENST00000496458 KIAA1024Q9UPX6 916 aa11.7□□□□□ -0.54
SF3B1-212ENST00000496458 ARID3CA6NKF2 412 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms