RNA–Protein interactions for RNA: ENST00000494395.1

ITGB1-217, Transcript of integrin subunit beta 1, humanhuman

TSL 3

Gene ITGB1, Length 562 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-217ENST00000494395 FAM98CQ17RN3 349 aaKnown RBP12.12□□□□□ -0.47
ITGB1-217ENST00000494395 BARGINQ6ZT62 677 aa12.12□□□□□ -0.47
ITGB1-217ENST00000494395 SEPT12Q8IYM1 358 aa12.12□□□□□ -0.47
ITGB1-217ENST00000494395 PIP4P2Q8N4L2 257 aa12.12□□□□□ -0.47
ITGB1-217ENST00000494395 POLR3GLQ9BT43 218 aa12.12□□□□□ -0.47
ITGB1-217ENST00000494395 CCDC9Q9Y3X0 531 aaKnown RBP12.12□□□□□ -0.47
ITGB1-217ENST00000494395 CCDC7Q96M83 1385 aa12.12□□□□□ -0.47
ITGB1-217ENST00000494395 FAM208AQ9UK61 1670 aaKnown RBP12.12□□□□□ -0.47
ITGB1-217ENST00000494395 EP400Q96L91 3159 aa12.12□□□□□ -0.47
ITGB1-217ENST00000494395 MAP3K19Q56UN5 1328 aa12.11□□□□□ -0.47
ITGB1-217ENST00000494395 WASHC2AQ641Q2 1341 aa12.11□□□□□ -0.47
ITGB1-217ENST00000494395 WDR17Q8IZU2 1322 aa12.11□□□□□ -0.47
ITGB1-217ENST00000494395 BLMP54132 1417 aaPredicted RBP12.11□□□□□ -0.47
ITGB1-217ENST00000494395 ZBTB7CA1YPR0 619 aa12.11□□□□□ -0.47
ITGB1-217ENST00000494395 FBLN1P23142 703 aa12.11□□□□□ -0.47
ITGB1-217ENST00000494395 PANK3Q9H999 370 aa12.11□□□□□ -0.47
ITGB1-217ENST00000494395 STK24Q9Y6E0 443 aa12.11□□□□□ -0.47
ITGB1-217ENST00000494395 MAP2P11137 1827 aaKnown RBP12.11□□□□□ -0.47
ITGB1-217ENST00000494395 LRRC37A3O60309 1634 aa12.11□□□□□ -0.47
ITGB1-217ENST00000494395 ERBB3P21860 1342 aa12.11□□□□□ -0.47
ITGB1-217ENST00000494395 CGNL1Q0VF96 1302 aa12.11□□□□□ -0.47
ITGB1-217ENST00000494395 RTL1A6NKG5 1358 aa12.1□□□□□ -0.47
ITGB1-217ENST00000494395 EVA1CP58658 441 aa12.1□□□□□ -0.47
ITGB1-217ENST00000494395 UPF1Q92900 1129 aaKnown RBP eCLIP12.1□□□□□ -0.47
ITGB1-217ENST00000494395 BCL11BQ9C0K0 894 aaPredicted RBP12.1□□□□□ -0.47
ITGB1-217ENST00000494395 DISP2A7MBM2 1401 aa12.1□□□□□ -0.47
ITGB1-217ENST00000494395 RGPD2P0DJD1 1756 aa12.1□□□□□ -0.47
ITGB1-217ENST00000494395 TCP11L2Q8N4U5 519 aa12.09□□□□□ -0.47
ITGB1-217ENST00000494395 IP6K1Q92551 441 aa12.09□□□□□ -0.47
ITGB1-217ENST00000494395 THRAP3Q9Y2W1 955 aaKnown RBP12.09□□□□□ -0.47
ITGB1-217ENST00000494395 NSD2O96028 1365 aa12.08□□□□□ -0.48
ITGB1-217ENST00000494395 HOXC9P31274 260 aa12.08□□□□□ -0.48
ITGB1-217ENST00000494395 ZNF467Q7Z7K2 595 aaPredicted RBP12.08□□□□□ -0.48
ITGB1-217ENST00000494395 KIF24Q5T7B8 1368 aa12.07□□□□□ -0.48
ITGB1-217ENST00000494395 PER1O15534 1290 aaPredicted RBP12.07□□□□□ -0.48
ITGB1-217ENST00000494395 RRS1Q15050 365 aaKnown RBP12.07□□□□□ -0.48
ITGB1-217ENST00000494395 KRT27Q7Z3Y8 459 aa12.07□□□□□ -0.48
ITGB1-217ENST00000494395 CARD10Q9BWT7 1032 aa12.07□□□□□ -0.48
ITGB1-217ENST00000494395 USP35Q9P2H5 1018 aa12.07□□□□□ -0.48
ITGB1-217ENST00000494395 GTPBP6O43824 516 aaPredicted RBP12.06□□□□□ -0.48
ITGB1-217ENST00000494395 TOM1L2Q6ZVM7 507 aa12.06□□□□□ -0.48
ITGB1-217ENST00000494395 ANKRD24Q8TF21 1146 aa12.06□□□□□ -0.48
ITGB1-217ENST00000494395 SMG6Q86US8 1419 aaKnown RBP12.05□□□□□ -0.48
ITGB1-217ENST00000494395 TNS1Q9HBL0 1735 aaKnown RBP12.05□□□□□ -0.48
ITGB1-217ENST00000494395 INSRP06213 1382 aa12.05□□□□□ -0.48
ITGB1-217ENST00000494395 FLT4P35916 1363 aa12.05□□□□□ -0.48
ITGB1-217ENST00000494395 AMPHP49418 695 aa12.04□□□□□ -0.48
ITGB1-217ENST00000494395 EMILIN1Q9Y6C2 1016 aa12.04□□□□□ -0.48
ITGB1-217ENST00000494395 NCAPD2Q15021 1401 aa12.03□□□□□ -0.48
ITGB1-217ENST00000494395 RGPD1P0DJD0 1748 aa12.03□□□□□ -0.48
ITGB1-217ENST00000494395 SBF2Q86WG5 1849 aa12.03□□□□□ -0.48
ITGB1-217ENST00000494395 A0A0G2JS52 829 aa12.03□□□□□ -0.48
ITGB1-217ENST00000494395 CSB-PGBD3P0DP91 1061 aa12.03□□□□□ -0.48
ITGB1-217ENST00000494395 MYT1Q01538 1121 aa12.03□□□□□ -0.48
ITGB1-217ENST00000494395 POLKQ9UBT6 870 aa12.03□□□□□ -0.48
ITGB1-217ENST00000494395 PCDHB8Q9UN66 801 aa12.03□□□□□ -0.48
ITGB1-217ENST00000494395 PCDHB13Q9Y5F0 798 aa12.03□□□□□ -0.48
ITGB1-217ENST00000494395 NPC1L1Q9UHC9 1359 aa12.03□□□□□ -0.48
ITGB1-217ENST00000494395 SHANK3Q9BYB0 1731 aa12.03□□□□□ -0.48
ITGB1-217ENST00000494395 TNS2Q63HR2 1409 aa12.03□□□□□ -0.48
ITGB1-217ENST00000494395 HSP90AB2PQ58FF8 381 aa12.02□□□□□ -0.49
ITGB1-217ENST00000494395 FAM182BQ5T319 152 aa12.02□□□□□ -0.49
ITGB1-217ENST00000494395 KNSTRNQ9Y448 316 aa12.02□□□□□ -0.49
ITGB1-217ENST00000494395 CDCA7Q9BWT1 371 aaPredicted RBP12.01□□□□□ -0.49
ITGB1-217ENST00000494395 NLRP2Q9NX02 1062 aa12.01□□□□□ -0.49
ITGB1-217ENST00000494395 PDAP1Q13442 181 aaKnown RBP12□□□□□ -0.49
ITGB1-217ENST00000494395 BCL9O00512 1426 aa12□□□□□ -0.49
ITGB1-217ENST00000494395 MEGF6O75095 1541 aa12□□□□□ -0.49
ITGB1-217ENST00000494395 NBPF6Q5VWK0 638 aa11.99□□□□□ -0.49
ITGB1-217ENST00000494395 CCDC125Q86Z20 511 aa11.99□□□□□ -0.49
ITGB1-217ENST00000494395 LTV1Q96GA3 475 aaPredicted RBP11.99□□□□□ -0.49
ITGB1-217ENST00000494395 NBPF4Q96M43 638 aa11.99□□□□□ -0.49
ITGB1-217ENST00000494395 OVOS2A0A0G2JMS6 1433 aa11.99□□□□□ -0.49
ITGB1-217ENST00000494395 PKD1L3Q7Z443 1732 aa11.98□□□□□ -0.49
ITGB1-217ENST00000494395 IL2RBP14784 551 aa11.98□□□□□ -0.49
ITGB1-217ENST00000494395 TNNT2P45379 298 aaPredicted RBP11.98□□□□□ -0.49
ITGB1-217ENST00000494395 DDB1Q16531 1140 aa11.98□□□□□ -0.49
ITGB1-217ENST00000494395 MORC1Q86VD1 984 aa11.98□□□□□ -0.49
ITGB1-217ENST00000494395 MARCH10Q8NA82 808 aaPredicted RBP11.98□□□□□ -0.49
ITGB1-217ENST00000494395 ZNF579Q8NAF0 562 aaKnown RBP11.98□□□□□ -0.49
ITGB1-217ENST00000494395 ZEB1P37275 1124 aaPredicted RBP11.97□□□□□ -0.49
ITGB1-217ENST00000494395 PDE3BQ13370 1112 aa11.97□□□□□ -0.49
ITGB1-217ENST00000494395 FAM196AQ6ZSG2 479 aa11.97□□□□□ -0.49
ITGB1-217ENST00000494395 RGPD3A6NKT7 1758 aaPredicted RBP11.95□□□□□ -0.5
ITGB1-217ENST00000494395 RGPD4Q7Z3J3 1758 aa11.95□□□□□ -0.5
ITGB1-217ENST00000494395 NHSQ6T4R5 1651 aa11.95□□□□□ -0.5
ITGB1-217ENST00000494395 EXOC5O00471 708 aa11.95□□□□□ -0.5
ITGB1-217ENST00000494395 PPM1GO15355 546 aaPredicted RBP11.95□□□□□ -0.5
ITGB1-217ENST00000494395 EIF4A2Q14240 407 aaKnown RBP11.95□□□□□ -0.5
ITGB1-217ENST00000494395 CC2D1BQ5T0F9 858 aaKnown RBP11.95□□□□□ -0.5
ITGB1-217ENST00000494395 USHBP1Q8N6Y0 703 aa11.95□□□□□ -0.5
ITGB1-217ENST00000494395 RYDENQ9NUL5 291 aaKnown RBP11.95□□□□□ -0.5
ITGB1-217ENST00000494395 COL3A1P02461 1466 aaPredicted RBP11.95□□□□□ -0.5
ITGB1-217ENST00000494395 RREB1Q92766 1687 aa11.94□□□□□ -0.5
ITGB1-217ENST00000494395 IGSF1Q8N6C5 1336 aa11.94□□□□□ -0.5
ITGB1-217ENST00000494395 PSEN1P49768 467 aa11.94□□□□□ -0.5
ITGB1-217ENST00000494395 KIF12Q96FN5 646 aa11.94□□□□□ -0.5
ITGB1-217ENST00000494395 EYA1Q99502 592 aa11.94□□□□□ -0.5
ITGB1-217ENST00000494395 MAP3K13O43283 966 aa11.93□□□□□ -0.5
ITGB1-217ENST00000494395 TRIM37O94972 964 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms