RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 WDR43Q15061 677 aaKnown RBP eCLIP22.96■■□□□ 1.27
LIME1-208ENST00000493265 APBA3O96018 575 aa22.95■■□□□ 1.26
LIME1-208ENST00000493265 HMOX1P09601 288 aa22.95■■□□□ 1.26
LIME1-208ENST00000493265 RREB1Q92766 1687 aa22.95■■□□□ 1.26
LIME1-208ENST00000493265 CAMKK2Q96RR4 588 aa22.95■■□□□ 1.26
LIME1-208ENST00000493265 CRB1P82279 1406 aa22.94■■□□□ 1.26
LIME1-208ENST00000493265 PDE3BQ13370 1112 aa22.94■■□□□ 1.26
LIME1-208ENST00000493265 NUP188Q5SRE5 1749 aa22.94■■□□□ 1.26
LIME1-208ENST00000493265 FAM208AQ9UK61 1670 aaKnown RBP22.93■■□□□ 1.26
LIME1-208ENST00000493265 SULT6B1Q6IMI4 303 aa22.93■■□□□ 1.26
LIME1-208ENST00000493265 BARGINQ6ZT62 677 aa22.93■■□□□ 1.26
LIME1-208ENST00000493265 FAM9BQ8IZU0 186 aa22.93■■□□□ 1.26
LIME1-208ENST00000493265 AEBP1Q8IUX7 1158 aa22.92■■□□□ 1.26
LIME1-208ENST00000493265 IGSF1Q8N6C5 1336 aa22.91■■□□□ 1.26
LIME1-208ENST00000493265 TCP11L2Q8N4U5 519 aa22.91■■□□□ 1.26
LIME1-208ENST00000493265 CARD10Q9BWT7 1032 aa22.91■■□□□ 1.26
LIME1-208ENST00000493265 PARP4Q9UKK3 1724 aaKnown RBP22.91■■□□□ 1.26
LIME1-208ENST00000493265 PNISRQ8TF01 805 aaKnown RBP22.9■■□□□ 1.26
LIME1-208ENST00000493265 ADAMTS8Q9UP79 889 aa22.88■■□□□ 1.25
LIME1-208ENST00000493265 CCDC146Q8IYE0 955 aa22.85■■□□□ 1.25
LIME1-208ENST00000493265 RAPGEF4Q8WZA2 1011 aa22.85■■□□□ 1.25
LIME1-208ENST00000493265 PRKAR2BP31323 418 aa22.84■■□□□ 1.25
LIME1-208ENST00000493265 THRAP3Q9Y2W1 955 aaKnown RBP22.84■■□□□ 1.25
LIME1-208ENST00000493265 LRRC37A3O60309 1634 aa22.83■■□□□ 1.25
LIME1-208ENST00000493265 TATP17735 454 aaPredicted RBP22.83■■□□□ 1.25
LIME1-208ENST00000493265 RSPH6AQ9H0K4 717 aa22.83■■□□□ 1.25
LIME1-208ENST00000493265 FCHSD2O94868 740 aa22.82■■□□□ 1.24
LIME1-208ENST00000493265 IL2RBP14784 551 aa22.82■■□□□ 1.24
LIME1-208ENST00000493265 WNK3Q9BYP7 1800 aa22.82■■□□□ 1.24
LIME1-208ENST00000493265 MEGF6O75095 1541 aa22.82■■□□□ 1.24
LIME1-208ENST00000493265 NCAPD2Q15021 1401 aa22.82■■□□□ 1.24
LIME1-208ENST00000493265 KDRP35968 1356 aa22.81■■□□□ 1.24
LIME1-208ENST00000493265 SBF2Q86WG5 1849 aa22.81■■□□□ 1.24
LIME1-208ENST00000493265 SENP3-EIF4A1A0A087X0R7 540 aa22.81■■□□□ 1.24
LIME1-208ENST00000493265 NBPF14Q5TI25 921 aa22.81■■□□□ 1.24
LIME1-208ENST00000493265 NEFMP07197 916 aa22.79■■□□□ 1.24
LIME1-208ENST00000493265 OVOS2A0A0G2JMS6 1433 aa22.79■■□□□ 1.24
LIME1-208ENST00000493265 PNNQ9H307 717 aaKnown RBP22.78■■□□□ 1.24
LIME1-208ENST00000493265 MAPK8IP3Q9UPT6 1336 aa22.78■■□□□ 1.24
LIME1-208ENST00000493265 PHACTR3Q96KR7 559 aa22.77■■□□□ 1.24
LIME1-208ENST00000493265 RGPD3A6NKT7 1758 aaPredicted RBP22.76■■□□□ 1.23
LIME1-208ENST00000493265 RGPD4Q7Z3J3 1758 aa22.76■■□□□ 1.23
LIME1-208ENST00000493265 RUNDC1Q96C34 613 aa22.75■■□□□ 1.23
LIME1-208ENST00000493265 PLEKHF1Q96S99 279 aa22.75■■□□□ 1.23
LIME1-208ENST00000493265 CDCA7Q9BWT1 371 aaPredicted RBP22.75■■□□□ 1.23
LIME1-208ENST00000493265 DDB1Q16531 1140 aa22.74■■□□□ 1.23
LIME1-208ENST00000493265 PLEKHO1Q53GL0 409 aaPredicted RBP22.74■■□□□ 1.23
LIME1-208ENST00000493265 ZCRB1Q8TBF4 217 aaKnown RBP22.74■■□□□ 1.23
LIME1-208ENST00000493265 EXOC5O00471 708 aa22.73■■□□□ 1.23
LIME1-208ENST00000493265 DDX54Q8TDD1 881 aaKnown RBP22.73■■□□□ 1.23
LIME1-208ENST00000493265 SPG7Q9UQ90 795 aa22.73■■□□□ 1.23
LIME1-208ENST00000493265 MTHFSDQ2M296 383 aaKnown RBP22.72■■□□□ 1.23
LIME1-208ENST00000493265 ZNF530Q6P9A1 599 aaPredicted RBP22.72■■□□□ 1.23
LIME1-208ENST00000493265 RRP7AQ9Y3A4 280 aaKnown RBP22.72■■□□□ 1.23
LIME1-208ENST00000493265 NEUROD2Q15784 382 aa22.71■■□□□ 1.23
LIME1-208ENST00000493265 AMOTQ4VCS5 1084 aa22.71■■□□□ 1.23
LIME1-208ENST00000493265 PPP1R1BQ9UD71 204 aaPredicted RBP22.71■■□□□ 1.23
LIME1-208ENST00000493265 APAF1O14727 1248 aa22.7■■□□□ 1.22
LIME1-208ENST00000493265 PTF1AQ7RTS3 328 aa22.7■■□□□ 1.22
LIME1-208ENST00000493265 SPON1Q9HCB6 807 aa22.7■■□□□ 1.22
LIME1-208ENST00000493265 SALL2Q9Y467 1007 aaPredicted RBP22.69■■□□□ 1.22
LIME1-208ENST00000493265 PKD1L3Q7Z443 1732 aa22.68■■□□□ 1.22
LIME1-208ENST00000493265 TNS2Q63HR2 1409 aa22.68■■□□□ 1.22
LIME1-208ENST00000493265 KCNQ2O43526 872 aa22.68■■□□□ 1.22
LIME1-208ENST00000493265 PCDH11XQ9BZA7 1347 aa22.67■■□□□ 1.22
LIME1-208ENST00000493265 PCDH11YQ9BZA8 1340 aa22.67■■□□□ 1.22
LIME1-208ENST00000493265 NFE2L2Q16236 605 aa22.67■■□□□ 1.22
LIME1-208ENST00000493265 C1orf141Q5JVX7 400 aa22.67■■□□□ 1.22
LIME1-208ENST00000493265 MARCH10Q8NA82 808 aaPredicted RBP22.67■■□□□ 1.22
LIME1-208ENST00000493265 GAS2L2Q8NHY3 880 aa22.67■■□□□ 1.22
LIME1-208ENST00000493265 ANO8Q9HCE9 1232 aaPredicted RBP22.67■■□□□ 1.22
LIME1-208ENST00000493265 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.67■■□□□ 1.22
LIME1-208ENST00000493265 CASZ1Q86V15 1759 aa22.67■■□□□ 1.22
LIME1-208ENST00000493265 PLSCR1O15162 318 aa22.66■■□□□ 1.22
LIME1-208ENST00000493265 CYP27B1O15528 508 aa22.66■■□□□ 1.22
LIME1-208ENST00000493265 BCL11BQ9C0K0 894 aaPredicted RBP22.66■■□□□ 1.22
LIME1-208ENST00000493265 TMPOP42166 694 aaKnown RBP22.65■■□□□ 1.22
LIME1-208ENST00000493265 RIPK4P57078 832 aa22.65■■□□□ 1.22
LIME1-208ENST00000493265 SHANK3Q9BYB0 1731 aa22.65■■□□□ 1.22
LIME1-208ENST00000493265 IFNL2Q8IZJ0 200 aa22.64■■□□□ 1.21
LIME1-208ENST00000493265 PHKG2P15735 406 aa22.63■■□□□ 1.21
LIME1-208ENST00000493265 YTHDC1Q96MU7 727 aaKnown RBP22.63■■□□□ 1.21
LIME1-208ENST00000493265 YY1P25490 414 aa22.62■■□□□ 1.21
LIME1-208ENST00000493265 AKAP4Q5JQC9 854 aa22.62■■□□□ 1.21
LIME1-208ENST00000493265 MPRIPQ6WCQ1 1025 aa22.62■■□□□ 1.21
LIME1-208ENST00000493265 MAP3K5Q99683 1374 aa22.62■■□□□ 1.21
LIME1-208ENST00000493265 PLEKHG2Q9H7P9 1386 aa22.62■■□□□ 1.21
LIME1-208ENST00000493265 GNAT3A8MTJ3 354 aa22.61■■□□□ 1.21
LIME1-208ENST00000493265 HNRNPUQ00839 825 aaKnown RBP eCLIP22.61■■□□□ 1.21
LIME1-208ENST00000493265 BCL9O00512 1426 aa22.6■■□□□ 1.21
LIME1-208ENST00000493265 DCTN1Q14203 1278 aa22.6■■□□□ 1.21
LIME1-208ENST00000493265 RTF1Q92541 710 aaKnown RBP22.6■■□□□ 1.21
LIME1-208ENST00000493265 PDGFDQ9GZP0 370 aaPredicted RBP22.6■■□□□ 1.21
LIME1-208ENST00000493265 DLG5Q8TDM6 1919 aa22.6■■□□□ 1.21
LIME1-208ENST00000493265 MCM10Q7L590 875 aa22.59■■□□□ 1.21
LIME1-208ENST00000493265 PROM2Q8N271 834 aa22.59■■□□□ 1.21
LIME1-208ENST00000493265 LGR6Q9HBX8 967 aa22.58■■□□□ 1.21
LIME1-208ENST00000493265 ZBTB7AO95365 584 aa22.57■■□□□ 1.2
LIME1-208ENST00000493265 HSP90AB1P08238 724 aaKnown RBP22.57■■□□□ 1.2
LIME1-208ENST00000493265 THUMPD2Q9BTF0 503 aaKnown RBP22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms