RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 KDM5DQ9BY66 1539 aa7.98□□□□□ -1.13
VPS41-214ENST00000490924 RAPGEF6Q8TEU7 1601 aa7.97□□□□□ -1.13
VPS41-214ENST00000490924 HSPA5P11021 654 aaKnown RBP7.97□□□□□ -1.13
VPS41-214ENST00000490924 WDR4P57081 412 aaKnown RBP7.97□□□□□ -1.13
VPS41-214ENST00000490924 TRIM46Q7Z4K8 759 aa7.97□□□□□ -1.13
VPS41-214ENST00000490924 MPNDQ8N594 471 aa7.97□□□□□ -1.13
VPS41-214ENST00000490924 ZFP42Q96MM3 310 aa7.97□□□□□ -1.13
VPS41-214ENST00000490924 PCDHGC3Q9UN70 934 aa7.97□□□□□ -1.13
VPS41-214ENST00000490924 INSRP06213 1382 aa7.97□□□□□ -1.13
VPS41-214ENST00000490924 GRIN2AQ12879 1464 aa7.96□□□□□ -1.13
VPS41-214ENST00000490924 MOXD2PA6NHM9 499 aa7.96□□□□□ -1.14
VPS41-214ENST00000490924 NDUFV2P19404 249 aa7.96□□□□□ -1.14
VPS41-214ENST00000490924 GMPRP36959 345 aa7.96□□□□□ -1.14
VPS41-214ENST00000490924 MRPL14Q6P1L8 145 aaKnown RBP7.96□□□□□ -1.14
VPS41-214ENST00000490924 PRKRIP1Q9H875 184 aaPredicted RBP7.96□□□□□ -1.14
VPS41-214ENST00000490924 TLL2Q9Y6L7 1015 aa7.96□□□□□ -1.14
VPS41-214ENST00000490924 ADGBQ8N7X0 1667 aa7.95□□□□□ -1.14
VPS41-214ENST00000490924 ZMYM4Q5VZL5 1548 aa7.95□□□□□ -1.14
VPS41-214ENST00000490924 H3BM21 787 aa7.95□□□□□ -1.14
VPS41-214ENST00000490924 MAN1A2O60476 641 aa7.95□□□□□ -1.14
VPS41-214ENST00000490924 GJA5P36382 358 aa7.95□□□□□ -1.14
VPS41-214ENST00000490924 ARMC2Q8NEN0 867 aa7.95□□□□□ -1.14
VPS41-214ENST00000490924 BEGAINQ9BUH8 593 aa7.95□□□□□ -1.14
VPS41-214ENST00000490924 ZBTB3Q9H5J0 574 aa7.95□□□□□ -1.14
VPS41-214ENST00000490924 KIAA1107Q9UPP5 1409 aa7.95□□□□□ -1.14
VPS41-214ENST00000490924 PZPP20742 1482 aa7.94□□□□□ -1.14
VPS41-214ENST00000490924 CDK13Q14004 1512 aaKnown RBP7.94□□□□□ -1.14
VPS41-214ENST00000490924 VEGFBP49765 207 aa7.94□□□□□ -1.14
VPS41-214ENST00000490924 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS41-214ENST00000490924 L3MBTL2Q969R5 705 aa7.94□□□□□ -1.14
VPS41-214ENST00000490924 PPP4R2Q9NY27 417 aa7.94□□□□□ -1.14
VPS41-214ENST00000490924 RBM19Q9Y4C8 960 aaKnown RBP7.94□□□□□ -1.14
VPS41-214ENST00000490924 GIGYF2Q6Y7W6 1299 aaKnown RBP7.93□□□□□ -1.14
VPS41-214ENST00000490924 BPHLQ86WA6 291 aaPredicted RBP7.93□□□□□ -1.14
VPS41-214ENST00000490924 TSC1Q92574 1164 aa7.93□□□□□ -1.14
VPS41-214ENST00000490924 PURBQ96QR8 312 aaKnown RBP7.93□□□□□ -1.14
VPS41-214ENST00000490924 RNF123Q5XPI4 1314 aa7.93□□□□□ -1.14
VPS41-214ENST00000490924 ANKRD30AQ9BXX3 1397 aa7.93□□□□□ -1.14
VPS41-214ENST00000490924 PTPRGP23470 1445 aa7.93□□□□□ -1.14
VPS41-214ENST00000490924 NUP160Q12769 1436 aa7.93□□□□□ -1.14
VPS41-214ENST00000490924 CARMIL2Q6F5E8 1435 aa7.93□□□□□ -1.14
VPS41-214ENST00000490924 SYNJ2O15056 1496 aa7.93□□□□□ -1.14
VPS41-214ENST00000490924 RALGAPBQ86X10 1494 aa7.93□□□□□ -1.14
VPS41-214ENST00000490924 GPATCH8Q9UKJ3 1502 aaKnown RBP7.93□□□□□ -1.14
VPS41-214ENST00000490924 KDM6BO15054 1643 aa7.92□□□□□ -1.14
VPS41-214ENST00000490924 KIF14Q15058 1648 aa7.92□□□□□ -1.14
VPS41-214ENST00000490924 CROCC2H7BZ55 1655 aa7.92□□□□□ -1.14
VPS41-214ENST00000490924 NUTM2BA6NNL0 878 aaPredicted RBP7.92□□□□□ -1.14
VPS41-214ENST00000490924 NUTM2EB1AL46 878 aaPredicted RBP7.92□□□□□ -1.14
VPS41-214ENST00000490924 SPTLC1O15269 473 aa7.92□□□□□ -1.14
VPS41-214ENST00000490924 NR5A1Q13285 461 aa7.92□□□□□ -1.14
VPS41-214ENST00000490924 NUTM2DQ5VT03 806 aaPredicted RBP7.92□□□□□ -1.14
VPS41-214ENST00000490924 BARGINQ6ZT62 677 aa7.92□□□□□ -1.14
VPS41-214ENST00000490924 NUTM2AQ8IVF1 878 aaPredicted RBP7.92□□□□□ -1.14
VPS41-214ENST00000490924 SMG6Q86US8 1419 aaKnown RBP7.92□□□□□ -1.14
VPS41-214ENST00000490924 CAMSAP2Q08AD1 1489 aa7.92□□□□□ -1.14
VPS41-214ENST00000490924 HNRNPUQ00839 825 aaKnown RBP eCLIP7.91□□□□□ -1.14
VPS41-214ENST00000490924 AMHR2Q16671 573 aa7.91□□□□□ -1.14
VPS41-214ENST00000490924 LYPD8Q6UX82 237 aa7.91□□□□□ -1.14
VPS41-214ENST00000490924 TRIM52Q96A61 297 aa7.91□□□□□ -1.14
VPS41-214ENST00000490924 TBC1D2Q9BYX2 928 aa7.91□□□□□ -1.14
VPS41-214ENST00000490924 RRP7BPQ9NSQ0 103 aa7.91□□□□□ -1.14
VPS41-214ENST00000490924 ARHGEF5Q12774 1597 aa7.91□□□□□ -1.14
VPS41-214ENST00000490924 BMP2P12643 396 aa7.9□□□□□ -1.14
VPS41-214ENST00000490924 DHX29Q7Z478 1369 aaKnown RBP7.89□□□□□ -1.15
VPS41-214ENST00000490924 KIF7Q2M1P5 1343 aa7.89□□□□□ -1.15
VPS41-214ENST00000490924 WASHC2CQ9Y4E1 1318 aa7.89□□□□□ -1.15
VPS41-214ENST00000490924 ZIC2O95409 532 aaPredicted RBP7.89□□□□□ -1.15
VPS41-214ENST00000490924 TIMP2P16035 220 aa7.89□□□□□ -1.15
VPS41-214ENST00000490924 C6orf118Q5T5N4 469 aa7.89□□□□□ -1.15
VPS41-214ENST00000490924 NBPF14Q5TI25 921 aa7.89□□□□□ -1.15
VPS41-214ENST00000490924 RSBN1LQ6PCB5 846 aaPredicted RBP7.89□□□□□ -1.15
VPS41-214ENST00000490924 ABCC10Q5T3U5 1492 aa7.88□□□□□ -1.15
VPS41-214ENST00000490924 ANKRD50Q9ULJ7 1429 aa7.88□□□□□ -1.15
VPS41-214ENST00000490924 PRPF38BQ5VTL8 546 aaKnown RBP7.88□□□□□ -1.15
VPS41-214ENST00000490924 HELBQ8NG08 1087 aaPredicted RBP7.88□□□□□ -1.15
VPS41-214ENST00000490924 EIF4G3O43432 1585 aaKnown RBP7.88□□□□□ -1.15
VPS41-214ENST00000490924 ABCA8O94911 1581 aa7.88□□□□□ -1.15
VPS41-214ENST00000490924 KDM5CP41229 1560 aa7.88□□□□□ -1.15
VPS41-214ENST00000490924 BRD4O60885 1362 aaPredicted RBP7.87□□□□□ -1.15
VPS41-214ENST00000490924 CSPP1Q1MSJ5 1256 aa7.87□□□□□ -1.15
VPS41-214ENST00000490924 RIC3Q7Z5B4 369 aa7.87□□□□□ -1.15
VPS41-214ENST00000490924 CDK15Q96Q40 435 aa7.87□□□□□ -1.15
VPS41-214ENST00000490924 CFDP1Q9UEE9 299 aaPredicted RBP7.87□□□□□ -1.15
VPS41-214ENST00000490924 LAMC1P11047 1609 aa7.87□□□□□ -1.15
VPS41-214ENST00000490924 ATP10AO60312 1499 aa7.87□□□□□ -1.15
VPS41-214ENST00000490924 GPRASP1Q5JY77 1395 aa7.86□□□□□ -1.15
VPS41-214ENST00000490924 USP47Q96K76 1375 aa7.86□□□□□ -1.15
VPS41-214ENST00000490924 CEP170Q5SW79 1584 aa7.86□□□□□ -1.15
VPS41-214ENST00000490924 ZMYND10O75800 440 aa7.86□□□□□ -1.15
VPS41-214ENST00000490924 NBPF8Q3BBV2 869 aa7.86□□□□□ -1.15
VPS41-214ENST00000490924 MRS2Q9HD23 443 aa7.86□□□□□ -1.15
VPS41-214ENST00000490924 LRPPRCP42704 1394 aaKnown RBP7.85□□□□□ -1.15
VPS41-214ENST00000490924 KIF15Q9NS87 1388 aa7.85□□□□□ -1.15
VPS41-214ENST00000490924 MAST1Q9Y2H9 1570 aa7.85□□□□□ -1.15
VPS41-214ENST00000490924 ZNF608Q9ULD9 1512 aaPredicted RBP7.85□□□□□ -1.15
VPS41-214ENST00000490924 RALBP1Q15311 655 aa7.85□□□□□ -1.15
VPS41-214ENST00000490924 FOXJ1Q92949 421 aa7.85□□□□□ -1.15
VPS41-214ENST00000490924 CHIC2Q9UKJ5 165 aa7.85□□□□□ -1.15
VPS41-214ENST00000490924 C9orf84Q5VXU9 1444 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms