RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 CDCA7Q9BWT1 371 aaPredicted RBP25.76■■□□□ 1.71
CCM2-216ENST00000488727 OVOS2A0A0G2JMS6 1433 aa25.75■■□□□ 1.71
CCM2-216ENST00000488727 RAPGEF4Q8WZA2 1011 aa25.75■■□□□ 1.71
CCM2-216ENST00000488727 SHANK3Q9BYB0 1731 aa25.75■■□□□ 1.71
CCM2-216ENST00000488727 U2AF1L5P0DN76 240 aaPredicted RBP25.74■■□□□ 1.71
CCM2-216ENST00000488727 U2AF1Q01081 240 aaKnown RBP eCLIP25.74■■□□□ 1.71
CCM2-216ENST00000488727 PKD1L3Q7Z443 1732 aa25.74■■□□□ 1.71
CCM2-216ENST00000488727 MRS2Q9HD23 443 aa25.73■■□□□ 1.71
CCM2-216ENST00000488727 TNS2Q63HR2 1409 aa25.72■■□□□ 1.71
CCM2-216ENST00000488727 TATP17735 454 aaPredicted RBP25.71■■□□□ 1.71
CCM2-216ENST00000488727 DDB1Q16531 1140 aa25.71■■□□□ 1.71
CCM2-216ENST00000488727 HNRNPUQ00839 825 aaKnown RBP eCLIP25.7■■□□□ 1.7
CCM2-216ENST00000488727 RSPH6AQ9H0K4 717 aa25.7■■□□□ 1.7
CCM2-216ENST00000488727 EXOC5O00471 708 aa25.68■■□□□ 1.7
CCM2-216ENST00000488727 PLEKHG2Q9H7P9 1386 aa25.67■■□□□ 1.7
CCM2-216ENST00000488727 FCHSD2O94868 740 aa25.66■■□□□ 1.7
CCM2-216ENST00000488727 PRKAR2BP31323 418 aa25.66■■□□□ 1.7
CCM2-216ENST00000488727 WDR43Q15061 677 aaKnown RBP eCLIP25.66■■□□□ 1.7
CCM2-216ENST00000488727 ZCRB1Q8TBF4 217 aaKnown RBP25.66■■□□□ 1.7
CCM2-216ENST00000488727 PNISRQ8TF01 805 aaKnown RBP25.66■■□□□ 1.7
CCM2-216ENST00000488727 ADAMTS8Q9UP79 889 aa25.66■■□□□ 1.7
CCM2-216ENST00000488727 ILDR2Q71H61 639 aa25.65■■□□□ 1.7
CCM2-216ENST00000488727 KRT27Q7Z3Y8 459 aa25.64■■□□□ 1.7
CCM2-216ENST00000488727 EP400Q96L91 3159 aa25.64■■□□□ 1.69
CCM2-216ENST00000488727 PDE3BQ13370 1112 aa25.63■■□□□ 1.69
CCM2-216ENST00000488727 FAM182BQ5T319 152 aa25.63■■□□□ 1.69
CCM2-216ENST00000488727 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.63■■□□□ 1.69
CCM2-216ENST00000488727 MARCH10Q8NA82 808 aaPredicted RBP25.63■■□□□ 1.69
CCM2-216ENST00000488727 PHACTR3Q96KR7 559 aa25.62■■□□□ 1.69
CCM2-216ENST00000488727 PLEKHF1Q96S99 279 aa25.62■■□□□ 1.69
CCM2-216ENST00000488727 DDX54Q8TDD1 881 aaKnown RBP25.61■■□□□ 1.69
CCM2-216ENST00000488727 SPG7Q9UQ90 795 aa25.61■■□□□ 1.69
CCM2-216ENST00000488727 PCDH11XQ9BZA7 1347 aa25.6■■□□□ 1.69
CCM2-216ENST00000488727 PCDH11YQ9BZA8 1340 aa25.6■■□□□ 1.69
CCM2-216ENST00000488727 CYP27B1O15528 508 aa25.6■■□□□ 1.69
CCM2-216ENST00000488727 PLEKHO1Q53GL0 409 aaPredicted RBP25.6■■□□□ 1.69
CCM2-216ENST00000488727 AMOTQ4VCS5 1084 aa25.6■■□□□ 1.69
CCM2-216ENST00000488727 MTHFSDQ2M296 383 aaKnown RBP25.59■■□□□ 1.69
CCM2-216ENST00000488727 ZBED9Q6R2W3 1325 aa25.58■■□□□ 1.69
CCM2-216ENST00000488727 NEFLP07196 543 aa25.57■■□□□ 1.68
CCM2-216ENST00000488727 ZNF530Q6P9A1 599 aaPredicted RBP25.57■■□□□ 1.68
CCM2-216ENST00000488727 CCDC146Q8IYE0 955 aa25.57■■□□□ 1.68
CCM2-216ENST00000488727 PHKG2P15735 406 aa25.55■■□□□ 1.68
CCM2-216ENST00000488727 FAM9BQ8IZU0 186 aa25.55■■□□□ 1.68
CCM2-216ENST00000488727 SBF2Q86WG5 1849 aa25.55■■□□□ 1.68
CCM2-216ENST00000488727 FKBP8Q14318 412 aa25.54■■□□□ 1.68
CCM2-216ENST00000488727 PNNQ9H307 717 aaKnown RBP25.54■■□□□ 1.68
CCM2-216ENST00000488727 IFNL2Q8IZJ0 200 aa25.54■■□□□ 1.68
CCM2-216ENST00000488727 DLG5Q8TDM6 1919 aa25.54■■□□□ 1.68
CCM2-216ENST00000488727 DOT1LQ8TEK3 1739 aa25.53■■□□□ 1.68
CCM2-216ENST00000488727 TOGARAM1Q9Y4F4 1720 aa25.53■■□□□ 1.68
CCM2-216ENST00000488727 VIRMAQ69YN4 1812 aaKnown RBP25.52■■□□□ 1.68
CCM2-216ENST00000488727 BCL9O00512 1426 aa25.52■■□□□ 1.68
CCM2-216ENST00000488727 GAS2L2Q8NHY3 880 aa25.51■■□□□ 1.68
CCM2-216ENST00000488727 RUNDC1Q96C34 613 aa25.51■■□□□ 1.68
CCM2-216ENST00000488727 MAPK8IP3Q9UPT6 1336 aa25.51■■□□□ 1.67
CCM2-216ENST00000488727 NKX1-1Q15270 411 aaPredicted RBP25.51■■□□□ 1.67
CCM2-216ENST00000488727 NEFMP07197 916 aa25.5■■□□□ 1.67
CCM2-216ENST00000488727 C1orf141Q5JVX7 400 aa25.5■■□□□ 1.67
CCM2-216ENST00000488727 FAM196AQ6ZSG2 479 aa25.5■■□□□ 1.67
CCM2-216ENST00000488727 AKAP4Q5JQC9 854 aa25.49■■□□□ 1.67
CCM2-216ENST00000488727 KAT6BQ8WYB5 2073 aa25.49■■□□□ 1.67
CCM2-216ENST00000488727 SCN11AQ9UI33 1791 aa25.49■■□□□ 1.67
CCM2-216ENST00000488727 KDM6AO15550 1401 aaPredicted RBP25.49■■□□□ 1.67
CCM2-216ENST00000488727 ADAMTS7Q9UKP4 1686 aa25.48■■□□□ 1.67
CCM2-216ENST00000488727 MAP3K5Q99683 1374 aa25.48■■□□□ 1.67
CCM2-216ENST00000488727 NHSQ6T4R5 1651 aa25.47■■□□□ 1.67
CCM2-216ENST00000488727 MPRIPQ6WCQ1 1025 aa25.46■■□□□ 1.67
CCM2-216ENST00000488727 ITGB4P16144 1822 aa25.46■■□□□ 1.67
CCM2-216ENST00000488727 NFE2L2Q16236 605 aa25.46■■□□□ 1.67
CCM2-216ENST00000488727 ACSBG1Q96GR2 724 aa25.46■■□□□ 1.67
CCM2-216ENST00000488727 GNAT3A8MTJ3 354 aa25.45■■□□□ 1.66
CCM2-216ENST00000488727 DCAF5Q96JK2 942 aa25.45■■□□□ 1.66
CCM2-216ENST00000488727 HSP90AB1P08238 724 aaKnown RBP25.44■■□□□ 1.66
CCM2-216ENST00000488727 TMPOP42166 694 aaKnown RBP25.44■■□□□ 1.66
CCM2-216ENST00000488727 RRP7AQ9Y3A4 280 aaKnown RBP25.44■■□□□ 1.66
CCM2-216ENST00000488727 APAF1O14727 1248 aa25.43■■□□□ 1.66
CCM2-216ENST00000488727 KCNQ2O43526 872 aa25.43■■□□□ 1.66
CCM2-216ENST00000488727 PTF1AQ7RTS3 328 aa25.43■■□□□ 1.66
CCM2-216ENST00000488727 LGR6Q9HBX8 967 aa25.43■■□□□ 1.66
CCM2-216ENST00000488727 TNS1Q9HBL0 1735 aaKnown RBP25.43■■□□□ 1.66
CCM2-216ENST00000488727 TRIM37O94972 964 aa25.42■■□□□ 1.66
CCM2-216ENST00000488727 SENP3-EIF4A1A0A087X0R7 540 aa25.41■■□□□ 1.66
CCM2-216ENST00000488727 RNMTO43148 476 aaKnown RBP25.4■■□□□ 1.66
CCM2-216ENST00000488727 PRIM1P49642 420 aaKnown RBP25.4■■□□□ 1.66
CCM2-216ENST00000488727 NEUROD2Q15784 382 aa25.4■■□□□ 1.66
CCM2-216ENST00000488727 IL17REQ8NFR9 667 aa25.4■■□□□ 1.66
CCM2-216ENST00000488727 RIPK4P57078 832 aa25.4■■□□□ 1.66
CCM2-216ENST00000488727 BTAF1O14981 1849 aa25.4■■□□□ 1.66
CCM2-216ENST00000488727 SYTL4Q96C24 671 aaPredicted RBP25.39■■□□□ 1.65
CCM2-216ENST00000488727 CEMIPQ8WUJ3 1361 aa25.39■■□□□ 1.65
CCM2-216ENST00000488727 MRC1P22897 1456 aa25.38■■□□□ 1.65
CCM2-216ENST00000488727 DCTN1Q14203 1278 aa25.38■■□□□ 1.65
CCM2-216ENST00000488727 MCM10Q7L590 875 aa25.38■■□□□ 1.65
CCM2-216ENST00000488727 SIPA1L3O60292 1781 aaPredicted RBP25.37■■□□□ 1.65
CCM2-216ENST00000488727 ERVV-2B6SEH9 535 aa25.37■■□□□ 1.65
CCM2-216ENST00000488727 HTATSF1O43719 755 aaKnown RBP25.37■■□□□ 1.65
CCM2-216ENST00000488727 BCL11BQ9C0K0 894 aaPredicted RBP25.37■■□□□ 1.65
CCM2-216ENST00000488727 RTF1Q92541 710 aaKnown RBP25.36■■□□□ 1.65
CCM2-216ENST00000488727 TRIM35Q9UPQ4 493 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms