RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	CAMKK2	Q96RR4	588 aa		12.59	□□□□□ -0.39
USP4-213	ENST00000488520	ATP7B	P35670	1465 aa		12.59	□□□□□ -0.39
USP4-213	ENST00000488520	AKAP12	Q02952	1782 aa		12.58	□□□□□ -0.39
USP4-213	ENST00000488520	EVA1C	P58658	441 aa		12.58	□□□□□ -0.4
USP4-213	ENST00000488520	FAM196A	Q6ZSG2	479 aa		12.58	□□□□□ -0.4
USP4-213	ENST00000488520	NRK	Q7Z2Y5	1582 aa		12.58	□□□□□ -0.4
USP4-213	ENST00000488520	NUDT16	Q96DE0	195 aa	Known RBP	12.58	□□□□□ -0.4
USP4-213	ENST00000488520	PARP4	Q9UKK3	1724 aa	Known RBP	12.58	□□□□□ -0.4
USP4-213	ENST00000488520	WNK3	Q9BYP7	1800 aa		12.58	□□□□□ -0.4
USP4-213	ENST00000488520	LMO7	Q8WWI1	1683 aa		12.57	□□□□□ -0.4
USP4-213	ENST00000488520	TMEM92	Q6UXU6	159 aa		12.57	□□□□□ -0.4
USP4-213	ENST00000488520	CAMTA1	Q9Y6Y1	1673 aa		12.57	□□□□□ -0.4
USP4-213	ENST00000488520	PDE3B	Q13370	1112 aa		12.56	□□□□□ -0.4
USP4-213	ENST00000488520	SSH2	Q76I76	1423 aa		12.55	□□□□□ -0.4
USP4-213	ENST00000488520	KIAA1210	Q9ULL0	1709 aa		12.55	□□□□□ -0.4
USP4-213	ENST00000488520	LARP1	Q6PKG0	1096 aa	Known RBP	12.55	□□□□□ -0.4
USP4-213	ENST00000488520	CDK19	Q9BWU1	502 aa		12.55	□□□□□ -0.4
USP4-213	ENST00000488520	ACE	P12821	1306 aa		12.55	□□□□□ -0.4
USP4-213	ENST00000488520	QRICH2	Q9H0J4	1663 aa		12.54	□□□□□ -0.4
USP4-213	ENST00000488520	NBPF8	Q3BBV2	869 aa		12.53	□□□□□ -0.4
USP4-213	ENST00000488520	LCE2D	Q5TA82	110 aa	Predicted RBP	12.53	□□□□□ -0.4
USP4-213	ENST00000488520	ABTB2	Q8N961	1025 aa		12.53	□□□□□ -0.4
USP4-213	ENST00000488520	CHD4	Q14839	1912 aa		12.52	□□□□□ -0.4
USP4-213	ENST00000488520	PEAK1	Q9H792	1746 aa		12.52	□□□□□ -0.41
USP4-213	ENST00000488520	RGPD3	A6NKT7	1758 aa	Predicted RBP	12.52	□□□□□ -0.41
USP4-213	ENST00000488520	RGPD4	Q7Z3J3	1758 aa		12.52	□□□□□ -0.41
USP4-213	ENST00000488520	ZBTB7C	A1YPR0	619 aa		12.52	□□□□□ -0.41
USP4-213	ENST00000488520	GTPBP6	O43824	516 aa	Predicted RBP	12.52	□□□□□ -0.41
USP4-213	ENST00000488520	NBPF14	Q5TI25	921 aa		12.52	□□□□□ -0.41
USP4-213	ENST00000488520	BARGIN	Q6ZT62	677 aa		12.52	□□□□□ -0.41
USP4-213	ENST00000488520	CCER1	Q8TC90	406 aa	Predicted RBP	12.52	□□□□□ -0.41
USP4-213	ENST00000488520	POLR3A	O14802	1390 aa	Predicted RBP	12.52	□□□□□ -0.41
USP4-213	ENST00000488520	PARD3	Q8TEW0	1356 aa		12.52	□□□□□ -0.41
USP4-213	ENST00000488520	YY1	P25490	414 aa		12.51	□□□□□ -0.41
USP4-213	ENST00000488520	TCP11L2	Q8N4U5	519 aa		12.51	□□□□□ -0.41
USP4-213	ENST00000488520	BBX	Q8WY36	941 aa	Predicted RBP	12.51	□□□□□ -0.41
USP4-213	ENST00000488520	LRRC37A3	O60309	1634 aa		12.51	□□□□□ -0.41
USP4-213	ENST00000488520	COL18A1	P39060	1754 aa		12.51	□□□□□ -0.41
USP4-213	ENST00000488520	PPP1R1B	Q9UD71	204 aa	Predicted RBP	12.5	□□□□□ -0.41
USP4-213	ENST00000488520	CASZ1	Q86V15	1759 aa		12.5	□□□□□ -0.41
USP4-213	ENST00000488520	ST18	O60284	1047 aa		12.49	□□□□□ -0.41
USP4-213	ENST00000488520	COL5A2	P05997	1499 aa	Predicted RBP	12.48	□□□□□ -0.41
USP4-213	ENST00000488520	STAC3	Q96MF2	364 aa		12.48	□□□□□ -0.41
USP4-213	ENST00000488520	SPON1	Q9HCB6	807 aa		12.48	□□□□□ -0.41
USP4-213	ENST00000488520	PIK3C2A	O00443	1686 aa		12.48	□□□□□ -0.41
USP4-213	ENST00000488520	PPIP5K1	Q6PFW1	1433 aa		12.47	□□□□□ -0.41
USP4-213	ENST00000488520	CPD	O75976	1380 aa		12.47	□□□□□ -0.41
USP4-213	ENST00000488520	USP19	O94966	1318 aa		12.47	□□□□□ -0.41
USP4-213	ENST00000488520	PLEKHG3	A1L390	1219 aa		12.47	□□□□□ -0.41
USP4-213	ENST00000488520	KCNQ2	O43526	872 aa		12.47	□□□□□ -0.41
USP4-213	ENST00000488520	GC	P02774	474 aa		12.47	□□□□□ -0.41
USP4-213	ENST00000488520	SRPK2	P78362	688 aa	Known RBP	12.47	□□□□□ -0.41
USP4-213	ENST00000488520	NEUROD1	Q13562	356 aa		12.47	□□□□□ -0.41
USP4-213	ENST00000488520	NLRP13	Q86W25	1043 aa		12.47	□□□□□ -0.41
USP4-213	ENST00000488520	MYOM1	P52179	1685 aa		12.47	□□□□□ -0.41
USP4-213	ENST00000488520	KIF3C	O14782	793 aa		12.46	□□□□□ -0.41
USP4-213	ENST00000488520	NBPF1	Q3BBV0	1214 aa		12.46	□□□□□ -0.41
USP4-213	ENST00000488520	THRAP3	Q9Y2W1	955 aa	Known RBP	12.46	□□□□□ -0.41
USP4-213	ENST00000488520	CRB1	P82279	1406 aa		12.45	□□□□□ -0.42
USP4-213	ENST00000488520	C2orf72	A6NCS6	295 aa		12.45	□□□□□ -0.42
USP4-213	ENST00000488520	POTEM	A6NI47	508 aa		12.45	□□□□□ -0.42
USP4-213	ENST00000488520	HOXB3	P14651	431 aa	Predicted RBP	12.45	□□□□□ -0.42
USP4-213	ENST00000488520	DOK7	Q18PE1	504 aa		12.45	□□□□□ -0.42
USP4-213	ENST00000488520	POTEG	Q6S5H5	508 aa		12.45	□□□□□ -0.42
USP4-213	ENST00000488520	TMC2	Q8TDI7	906 aa		12.45	□□□□□ -0.42
USP4-213	ENST00000488520	OVOS2	A0A0G2JMS6	1433 aa		12.45	□□□□□ -0.42
USP4-213	ENST00000488520	OVOS2	A0A0J9YW53	1432 aa		12.45	□□□□□ -0.42
USP4-213	ENST00000488520	OVOS2	Q6IE36	1432 aa		12.45	□□□□□ -0.42
USP4-213	ENST00000488520	PTF1A	Q7RTS3	328 aa		12.44	□□□□□ -0.42
USP4-213	ENST00000488520	LTN1	O94822	1766 aa		12.43	□□□□□ -0.42
USP4-213	ENST00000488520	DDB1	Q16531	1140 aa		12.43	□□□□□ -0.42
USP4-213	ENST00000488520	TOM1L2	Q6ZVM7	507 aa		12.43	□□□□□ -0.42
USP4-213	ENST00000488520	PDGFD	Q9GZP0	370 aa	Predicted RBP	12.43	□□□□□ -0.42
USP4-213	ENST00000488520	SLIT3	O75094	1523 aa		12.42	□□□□□ -0.42
USP4-213	ENST00000488520	ANO8	Q9HCE9	1232 aa	Predicted RBP	12.42	□□□□□ -0.42
USP4-213	ENST00000488520	CENPJ	Q9HC77	1338 aa	Predicted RBP	12.41	□□□□□ -0.42
USP4-213	ENST00000488520	PLSCR1	O15162	318 aa		12.41	□□□□□ -0.42
USP4-213	ENST00000488520	SIN3A	Q96ST3	1273 aa		12.41	□□□□□ -0.42
USP4-213	ENST00000488520	CABP1	Q9NZU7	370 aa		12.41	□□□□□ -0.42
USP4-213	ENST00000488520	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.41	□□□□□ -0.42
USP4-213	ENST00000488520	NINL	Q9Y2I6	1382 aa		12.41	□□□□□ -0.42
USP4-213	ENST00000488520	CLSPN	Q9HAW4	1339 aa		12.4	□□□□□ -0.42
USP4-213	ENST00000488520	USP6	P35125	1406 aa		12.4	□□□□□ -0.42
USP4-213	ENST00000488520	BTAF1	O14981	1849 aa		12.4	□□□□□ -0.42
USP4-213	ENST00000488520	ZBTB7A	O95365	584 aa		12.4	□□□□□ -0.42
USP4-213	ENST00000488520	ZNF710	Q8N1W2	664 aa		12.4	□□□□□ -0.42
USP4-213	ENST00000488520	AXIN2	Q9Y2T1	843 aa		12.4	□□□□□ -0.42
USP4-213	ENST00000488520	AATK	Q6ZMQ8	1374 aa		12.4	□□□□□ -0.42
USP4-213	ENST00000488520	TRPM1	Q7Z4N2	1603 aa		12.4	□□□□□ -0.42
USP4-213	ENST00000488520	UTRN	P46939	3433 aa		12.4	□□□□□ -0.42
USP4-213	ENST00000488520	C11orf95	C9JLR9	678 aa	Predicted RBP	12.39	□□□□□ -0.43
USP4-213	ENST00000488520	RIMBP2	O15034	1052 aa		12.39	□□□□□ -0.43
USP4-213	ENST00000488520	MARCH10	Q8NA82	808 aa	Predicted RBP	12.39	□□□□□ -0.43
USP4-213	ENST00000488520	NHS	Q6T4R5	1651 aa		12.38	□□□□□ -0.43
USP4-213	ENST00000488520	MON2	Q7Z3U7	1717 aa		12.38	□□□□□ -0.43
USP4-213	ENST00000488520	WDR17	Q8IZU2	1322 aa		12.37	□□□□□ -0.43
USP4-213	ENST00000488520	CSB-PGBD3	P0DP91	1061 aa		12.37	□□□□□ -0.43
USP4-213	ENST00000488520	BRD4	O60885	1362 aa	Predicted RBP	12.37	□□□□□ -0.43
USP4-213	ENST00000488520	TUBGCP6	Q96RT7	1819 aa		12.37	□□□□□ -0.43
USP4-213	ENST00000488520	GPHN	Q9NQX3	736 aa	Predicted RBP	12.36	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms