RNA–Protein interactions for RNA: ENST00000487172.1

PCOLCE-208, Transcript of procollagen C-endopeptidase enhancer, humanhuman

TSL 2

Gene PCOLCE, Length 686 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCOLCE-208ENST00000487172 U2AF1L5P0DN76 240 aaPredicted RBP25.88■■□□□ 1.73
PCOLCE-208ENST00000487172 U2AF1Q01081 240 aaKnown RBP eCLIP25.88■■□□□ 1.73
PCOLCE-208ENST00000487172 TNS2Q63HR2 1409 aa25.88■■□□□ 1.73
PCOLCE-208ENST00000487172 FCHSD2O94868 740 aa25.87■■□□□ 1.73
PCOLCE-208ENST00000487172 PDE3BQ13370 1112 aa25.87■■□□□ 1.73
PCOLCE-208ENST00000487172 CCDC184Q52MB2 194 aa25.87■■□□□ 1.73
PCOLCE-208ENST00000487172 KRT27Q7Z3Y8 459 aa25.87■■□□□ 1.73
PCOLCE-208ENST00000487172 ZCRB1Q8TBF4 217 aaKnown RBP25.87■■□□□ 1.73
PCOLCE-208ENST00000487172 PKD1L3Q7Z443 1732 aa25.85■■□□□ 1.73
PCOLCE-208ENST00000487172 AMOTQ4VCS5 1084 aa25.84■■□□□ 1.73
PCOLCE-208ENST00000487172 ILDR2Q71H61 639 aa25.84■■□□□ 1.73
PCOLCE-208ENST00000487172 RSPH6AQ9H0K4 717 aa25.84■■□□□ 1.73
PCOLCE-208ENST00000487172 PLEKHO1Q53GL0 409 aaPredicted RBP25.83■■□□□ 1.73
PCOLCE-208ENST00000487172 MRS2Q9HD23 443 aa25.83■■□□□ 1.73
PCOLCE-208ENST00000487172 SPG7Q9UQ90 795 aa25.83■■□□□ 1.73
PCOLCE-208ENST00000487172 SHANK3Q9BYB0 1731 aa25.82■■□□□ 1.72
PCOLCE-208ENST00000487172 MARCH10Q8NA82 808 aaPredicted RBP25.81■■□□□ 1.72
PCOLCE-208ENST00000487172 PNNQ9H307 717 aaKnown RBP25.81■■□□□ 1.72
PCOLCE-208ENST00000487172 CCER2I3L3R5 266 aa25.8■■□□□ 1.72
PCOLCE-208ENST00000487172 WDR43Q15061 677 aaKnown RBP eCLIP25.8■■□□□ 1.72
PCOLCE-208ENST00000487172 PCDH11XQ9BZA7 1347 aa25.8■■□□□ 1.72
PCOLCE-208ENST00000487172 PCDH11YQ9BZA8 1340 aa25.8■■□□□ 1.72
PCOLCE-208ENST00000487172 PRKAR2BP31323 418 aa25.79■■□□□ 1.72
PCOLCE-208ENST00000487172 PNISRQ8TF01 805 aaKnown RBP25.79■■□□□ 1.72
PCOLCE-208ENST00000487172 DDX54Q8TDD1 881 aaKnown RBP25.78■■□□□ 1.72
PCOLCE-208ENST00000487172 BCL9O00512 1426 aa25.78■■□□□ 1.72
PCOLCE-208ENST00000487172 ADAMTS8Q9UP79 889 aa25.77■■□□□ 1.72
PCOLCE-208ENST00000487172 CYP27B1O15528 508 aa25.76■■□□□ 1.71
PCOLCE-208ENST00000487172 FAM196AQ6ZSG2 479 aa25.76■■□□□ 1.71
PCOLCE-208ENST00000487172 IFNL2Q8IZJ0 200 aa25.76■■□□□ 1.71
PCOLCE-208ENST00000487172 MIER1Q8N108 512 aa25.76■■□□□ 1.71
PCOLCE-208ENST00000487172 PLEKHF1Q96S99 279 aa25.76■■□□□ 1.71
PCOLCE-208ENST00000487172 PHKG2P15735 406 aa25.74■■□□□ 1.71
PCOLCE-208ENST00000487172 NKX1-1Q15270 411 aaPredicted RBP25.74■■□□□ 1.71
PCOLCE-208ENST00000487172 MTHFSDQ2M296 383 aaKnown RBP25.74■■□□□ 1.71
PCOLCE-208ENST00000487172 PHACTR3Q96KR7 559 aa25.74■■□□□ 1.71
PCOLCE-208ENST00000487172 NEFMP07197 916 aa25.73■■□□□ 1.71
PCOLCE-208ENST00000487172 FAM182BQ5T319 152 aa25.73■■□□□ 1.71
PCOLCE-208ENST00000487172 ZNF530Q6P9A1 599 aaPredicted RBP25.72■■□□□ 1.71
PCOLCE-208ENST00000487172 GAS2L2Q8NHY3 880 aa25.72■■□□□ 1.71
PCOLCE-208ENST00000487172 AKAP4Q5JQC9 854 aa25.7■■□□□ 1.7
PCOLCE-208ENST00000487172 HSP90AB1P08238 724 aaKnown RBP25.69■■□□□ 1.7
PCOLCE-208ENST00000487172 C1orf141Q5JVX7 400 aa25.69■■□□□ 1.7
PCOLCE-208ENST00000487172 RUNDC1Q96C34 613 aa25.69■■□□□ 1.7
PCOLCE-208ENST00000487172 MAPK8IP3Q9UPT6 1336 aa25.67■■□□□ 1.7
PCOLCE-208ENST00000487172 SBF2Q86WG5 1849 aa25.67■■□□□ 1.7
PCOLCE-208ENST00000487172 DCAF5Q96JK2 942 aa25.65■■□□□ 1.7
PCOLCE-208ENST00000487172 NFE2L2Q16236 605 aa25.63■■□□□ 1.69
PCOLCE-208ENST00000487172 CCDC146Q8IYE0 955 aa25.63■■□□□ 1.69
PCOLCE-208ENST00000487172 MAP3K5Q99683 1374 aa25.62■■□□□ 1.69
PCOLCE-208ENST00000487172 GNAT3A8MTJ3 354 aa25.62■■□□□ 1.69
PCOLCE-208ENST00000487172 CCDC125Q86Z20 511 aa25.62■■□□□ 1.69
PCOLCE-208ENST00000487172 HTATSF1O43719 755 aaKnown RBP25.61■■□□□ 1.69
PCOLCE-208ENST00000487172 MPRIPQ6WCQ1 1025 aa25.61■■□□□ 1.69
PCOLCE-208ENST00000487172 FAM9BQ8IZU0 186 aa25.61■■□□□ 1.69
PCOLCE-208ENST00000487172 BCL11BQ9C0K0 894 aaPredicted RBP25.61■■□□□ 1.69
PCOLCE-208ENST00000487172 KDM6AO15550 1401 aaPredicted RBP25.61■■□□□ 1.69
PCOLCE-208ENST00000487172 NHSQ6T4R5 1651 aa25.61■■□□□ 1.69
PCOLCE-208ENST00000487172 ADAMTS7Q9UKP4 1686 aa25.61■■□□□ 1.69
PCOLCE-208ENST00000487172 DOT1LQ8TEK3 1739 aa25.6■■□□□ 1.69
PCOLCE-208ENST00000487172 ERVV-2B6SEH9 535 aa25.6■■□□□ 1.69
PCOLCE-208ENST00000487172 ACSBG1Q96GR2 724 aa25.6■■□□□ 1.69
PCOLCE-208ENST00000487172 TOGARAM1Q9Y4F4 1720 aa25.6■■□□□ 1.69
PCOLCE-208ENST00000487172 SCN11AQ9UI33 1791 aa25.59■■□□□ 1.69
PCOLCE-208ENST00000487172 TRIM37O94972 964 aa25.59■■□□□ 1.69
PCOLCE-208ENST00000487172 TMPOP42166 694 aaKnown RBP25.59■■□□□ 1.69
PCOLCE-208ENST00000487172 UPF1Q92900 1129 aaKnown RBP eCLIP25.59■■□□□ 1.69
PCOLCE-208ENST00000487172 RNMTO43148 476 aaKnown RBP25.58■■□□□ 1.69
PCOLCE-208ENST00000487172 PRIM1P49642 420 aaKnown RBP25.58■■□□□ 1.69
PCOLCE-208ENST00000487172 DLG5Q8TDM6 1919 aa25.58■■□□□ 1.69
PCOLCE-208ENST00000487172 KAT6BQ8WYB5 2073 aa25.57■■□□□ 1.68
PCOLCE-208ENST00000487172 KCNQ2O43526 872 aa25.57■■□□□ 1.68
PCOLCE-208ENST00000487172 IL17REQ8NFR9 667 aa25.57■■□□□ 1.68
PCOLCE-208ENST00000487172 LGR6Q9HBX8 967 aa25.57■■□□□ 1.68
PCOLCE-208ENST00000487172 ITGB4P16144 1822 aa25.56■■□□□ 1.68
PCOLCE-208ENST00000487172 VIRMAQ69YN4 1812 aaKnown RBP25.56■■□□□ 1.68
PCOLCE-208ENST00000487172 RTF1Q92541 710 aaKnown RBP25.56■■□□□ 1.68
PCOLCE-208ENST00000487172 APAF1O14727 1248 aa25.55■■□□□ 1.68
PCOLCE-208ENST00000487172 RIPK4P57078 832 aa25.55■■□□□ 1.68
PCOLCE-208ENST00000487172 NCBP3Q53F19 620 aaKnown RBP25.54■■□□□ 1.68
PCOLCE-208ENST00000487172 SYTL4Q96C24 671 aaPredicted RBP25.54■■□□□ 1.68
PCOLCE-208ENST00000487172 CEMIPQ8WUJ3 1361 aa25.54■■□□□ 1.68
PCOLCE-208ENST00000487172 TNS1Q9HBL0 1735 aaKnown RBP25.54■■□□□ 1.68
PCOLCE-208ENST00000487172 PTF1AQ7RTS3 328 aa25.53■■□□□ 1.68
PCOLCE-208ENST00000487172 CABP4P57796 275 aa25.52■■□□□ 1.68
PCOLCE-208ENST00000487172 LMOD3Q0VAK6 560 aa25.52■■□□□ 1.68
PCOLCE-208ENST00000487172 SF3B2Q13435 895 aaKnown RBP25.52■■□□□ 1.68
PCOLCE-208ENST00000487172 TMOD3Q9NYL9 352 aa25.52■■□□□ 1.68
PCOLCE-208ENST00000487172 MRC1P22897 1456 aa25.52■■□□□ 1.68
PCOLCE-208ENST00000487172 PIGBQ92521 554 aa25.51■■□□□ 1.67
PCOLCE-208ENST00000487172 SLC52A2Q9HAB3 445 aa25.51■■□□□ 1.67
PCOLCE-208ENST00000487172 RRP7AQ9Y3A4 280 aaKnown RBP25.51■■□□□ 1.67
PCOLCE-208ENST00000487172 BTAF1O14981 1849 aa25.51■■□□□ 1.67
PCOLCE-208ENST00000487172 PLSCR1O15162 318 aa25.5■■□□□ 1.67
PCOLCE-208ENST00000487172 NFATC2IPQ8NCF5 419 aa25.5■■□□□ 1.67
PCOLCE-208ENST00000487172 SOCS7O14512 581 aa25.49■■□□□ 1.67
PCOLCE-208ENST00000487172 APBA3O96018 575 aa25.49■■□□□ 1.67
PCOLCE-208ENST00000487172 NEUROD2Q15784 382 aa25.49■■□□□ 1.67
PCOLCE-208ENST00000487172 MCM10Q7L590 875 aa25.49■■□□□ 1.67
PCOLCE-208ENST00000487172 TEFQ10587 303 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms