RNA–Protein interactions for RNA: ENST00000483359.5

CPNE1-224, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,975 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-224ENST00000483359 CDCA7Q9BWT1 371 aaPredicted RBP23.82■■□□□ 1.4
CPNE1-224ENST00000483359 OVOS2A0A0G2JMS6 1433 aa23.82■■□□□ 1.4
CPNE1-224ENST00000483359 TNS2Q63HR2 1409 aa23.8■■□□□ 1.4
CPNE1-224ENST00000483359 WDR43Q15061 677 aaKnown RBP eCLIP23.8■■□□□ 1.4
CPNE1-224ENST00000483359 EXOC5O00471 708 aa23.78■■□□□ 1.4
CPNE1-224ENST00000483359 FAM182BQ5T319 152 aa23.78■■□□□ 1.4
CPNE1-224ENST00000483359 EP400Q96L91 3159 aa23.78■■□□□ 1.4
CPNE1-224ENST00000483359 SHANK3Q9BYB0 1731 aa23.78■■□□□ 1.4
CPNE1-224ENST00000483359 PDE3BQ13370 1112 aa23.78■■□□□ 1.4
CPNE1-224ENST00000483359 PRKAR2BP31323 418 aa23.77■■□□□ 1.4
CPNE1-224ENST00000483359 RSPH6AQ9H0K4 717 aa23.77■■□□□ 1.4
CPNE1-224ENST00000483359 PKD1L3Q7Z443 1732 aa23.77■■□□□ 1.4
CPNE1-224ENST00000483359 ILDR2Q71H61 639 aa23.76■■□□□ 1.39
CPNE1-224ENST00000483359 DDX54Q8TDD1 881 aaKnown RBP23.76■■□□□ 1.39
CPNE1-224ENST00000483359 KRT27Q7Z3Y8 459 aa23.76■■□□□ 1.39
CPNE1-224ENST00000483359 ZCRB1Q8TBF4 217 aaKnown RBP23.76■■□□□ 1.39
CPNE1-224ENST00000483359 ADAMTS8Q9UP79 889 aa23.74■■□□□ 1.39
CPNE1-224ENST00000483359 FCHSD2O94868 740 aa23.72■■□□□ 1.39
CPNE1-224ENST00000483359 CCDC146Q8IYE0 955 aa23.72■■□□□ 1.39
CPNE1-224ENST00000483359 MARCH10Q8NA82 808 aaPredicted RBP23.72■■□□□ 1.39
CPNE1-224ENST00000483359 SPG7Q9UQ90 795 aa23.72■■□□□ 1.39
CPNE1-224ENST00000483359 PHACTR3Q96KR7 559 aa23.71■■□□□ 1.39
CPNE1-224ENST00000483359 PCDH11XQ9BZA7 1347 aa23.71■■□□□ 1.39
CPNE1-224ENST00000483359 PCDH11YQ9BZA8 1340 aa23.71■■□□□ 1.39
CPNE1-224ENST00000483359 PLEKHO1Q53GL0 409 aaPredicted RBP23.71■■□□□ 1.39
CPNE1-224ENST00000483359 PNISRQ8TF01 805 aaKnown RBP23.71■■□□□ 1.39
CPNE1-224ENST00000483359 CCER2I3L3R5 266 aa23.69■■□□□ 1.38
CPNE1-224ENST00000483359 CYP27B1O15528 508 aa23.69■■□□□ 1.38
CPNE1-224ENST00000483359 ZNF530Q6P9A1 599 aaPredicted RBP23.69■■□□□ 1.38
CPNE1-224ENST00000483359 FAM9BQ8IZU0 186 aa23.69■■□□□ 1.38
CPNE1-224ENST00000483359 MTHFSDQ2M296 383 aaKnown RBP23.69■■□□□ 1.38
CPNE1-224ENST00000483359 AMOTQ4VCS5 1084 aa23.69■■□□□ 1.38
CPNE1-224ENST00000483359 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.68■■□□□ 1.381e-6■■□□□ 12.2
CPNE1-224ENST00000483359 PLEKHF1Q96S99 279 aa23.67■■□□□ 1.38
CPNE1-224ENST00000483359 PLEKHG2Q9H7P9 1386 aa23.67■■□□□ 1.38
CPNE1-224ENST00000483359 MAPK8IP3Q9UPT6 1336 aa23.67■■□□□ 1.38
CPNE1-224ENST00000483359 NEFMP07197 916 aa23.66■■□□□ 1.38
CPNE1-224ENST00000483359 PHKG2P15735 406 aa23.65■■□□□ 1.38
CPNE1-224ENST00000483359 C1orf141Q5JVX7 400 aa23.64■■□□□ 1.38
CPNE1-224ENST00000483359 IFNL2Q8IZJ0 200 aa23.64■■□□□ 1.38
CPNE1-224ENST00000483359 PNNQ9H307 717 aaKnown RBP23.64■■□□□ 1.38
CPNE1-224ENST00000483359 SENP3-EIF4A1A0A087X0R7 540 aa23.63■■□□□ 1.37
CPNE1-224ENST00000483359 DOT1LQ8TEK3 1739 aa23.62■■□□□ 1.37
CPNE1-224ENST00000483359 GAS2L2Q8NHY3 880 aa23.62■■□□□ 1.37
CPNE1-224ENST00000483359 ACSBG1Q96GR2 724 aa23.62■■□□□ 1.37
CPNE1-224ENST00000483359 FAM196AQ6ZSG2 479 aa23.61■■□□□ 1.37
CPNE1-224ENST00000483359 RUNDC1Q96C34 613 aa23.61■■□□□ 1.37
CPNE1-224ENST00000483359 TOGARAM1Q9Y4F4 1720 aa23.61■■□□□ 1.37
CPNE1-224ENST00000483359 AKAP4Q5JQC9 854 aa23.6■■□□□ 1.37
CPNE1-224ENST00000483359 MPRIPQ6WCQ1 1025 aa23.6■■□□□ 1.37
CPNE1-224ENST00000483359 RRP7AQ9Y3A4 280 aaKnown RBP23.6■■□□□ 1.37
CPNE1-224ENST00000483359 SYTL4Q96C24 671 aaPredicted RBP23.59■■□□□ 1.37
CPNE1-224ENST00000483359 KAT6BQ8WYB5 2073 aa23.58■■□□□ 1.37
CPNE1-224ENST00000483359 MAP3K5Q99683 1374 aa23.58■■□□□ 1.37
CPNE1-224ENST00000483359 SBF2Q86WG5 1849 aa23.58■■□□□ 1.37
CPNE1-224ENST00000483359 KDM6AO15550 1401 aaPredicted RBP23.58■■□□□ 1.37
CPNE1-224ENST00000483359 NEUROD2Q15784 382 aa23.58■■□□□ 1.36
CPNE1-224ENST00000483359 DLG5Q8TDM6 1919 aa23.57■■□□□ 1.36
CPNE1-224ENST00000483359 TRIM37O94972 964 aa23.56■■□□□ 1.36
CPNE1-224ENST00000483359 NFE2L2Q16236 605 aa23.56■■□□□ 1.36
CPNE1-224ENST00000483359 GNAT3A8MTJ3 354 aa23.56■■□□□ 1.36
CPNE1-224ENST00000483359 KCNQ2O43526 872 aa23.56■■□□□ 1.36
CPNE1-224ENST00000483359 NKX1-1Q15270 411 aaPredicted RBP23.56■■□□□ 1.36
CPNE1-224ENST00000483359 PTF1AQ7RTS3 328 aa23.56■■□□□ 1.36
CPNE1-224ENST00000483359 VIRMAQ69YN4 1812 aaKnown RBP23.56■■□□□ 1.36
CPNE1-224ENST00000483359 APAF1O14727 1248 aa23.55■■□□□ 1.36
CPNE1-224ENST00000483359 HSP90AB1P08238 724 aaKnown RBP23.55■■□□□ 1.36
CPNE1-224ENST00000483359 DCAF5Q96JK2 942 aa23.55■■□□□ 1.36
CPNE1-224ENST00000483359 BCL9O00512 1426 aa23.55■■□□□ 1.36
CPNE1-224ENST00000483359 NHSQ6T4R5 1651 aa23.55■■□□□ 1.36
CPNE1-224ENST00000483359 LGR6Q9HBX8 967 aa23.54■■□□□ 1.36
CPNE1-224ENST00000483359 TMPOP42166 694 aaKnown RBP23.54■■□□□ 1.36
CPNE1-224ENST00000483359 SCN11AQ9UI33 1791 aa23.53■■□□□ 1.36
CPNE1-224ENST00000483359 PRIM1P49642 420 aaKnown RBP23.53■■□□□ 1.36
CPNE1-224ENST00000483359 RIPK4P57078 832 aa23.53■■□□□ 1.36
CPNE1-224ENST00000483359 DCTN1Q14203 1278 aa23.53■■□□□ 1.36
CPNE1-224ENST00000483359 MCM10Q7L590 875 aa23.52■■□□□ 1.36
CPNE1-224ENST00000483359 RTF1Q92541 710 aaKnown RBP23.52■■□□□ 1.36
CPNE1-224ENST00000483359 ITGB4P16144 1822 aa23.52■■□□□ 1.36
CPNE1-224ENST00000483359 RNMTO43148 476 aaKnown RBP23.51■■□□□ 1.35
CPNE1-224ENST00000483359 TNS1Q9HBL0 1735 aaKnown RBP23.5■■□□□ 1.35
CPNE1-224ENST00000483359 ADAMTS7Q9UKP4 1686 aa23.5■■□□□ 1.35
CPNE1-224ENST00000483359 IL17REQ8NFR9 667 aa23.49■■□□□ 1.35
CPNE1-224ENST00000483359 THUMPD2Q9BTF0 503 aaKnown RBP23.49■■□□□ 1.35
CPNE1-224ENST00000483359 SALL2Q9Y467 1007 aaPredicted RBP23.49■■□□□ 1.35
CPNE1-224ENST00000483359 BTAF1O14981 1849 aa23.48■■□□□ 1.35
CPNE1-224ENST00000483359 CABP4P57796 275 aa23.48■■□□□ 1.35
CPNE1-224ENST00000483359 TMOD3Q9NYL9 352 aa23.48■■□□□ 1.35
CPNE1-224ENST00000483359 BCL11BQ9C0K0 894 aaPredicted RBP23.47■■□□□ 1.35
CPNE1-224ENST00000483359 ERVV-2B6SEH9 535 aa23.46■■□□□ 1.35
CPNE1-224ENST00000483359 NFATC2IPQ8NCF5 419 aa23.46■■□□□ 1.35
CPNE1-224ENST00000483359 UPF1Q92900 1129 aaKnown RBP eCLIP23.46■■□□□ 1.35
CPNE1-224ENST00000483359 MRC1P22897 1456 aa23.45■■□□□ 1.35
CPNE1-224ENST00000483359 PIGBQ92521 554 aa23.45■■□□□ 1.35
CPNE1-224ENST00000483359 CEMIPQ8WUJ3 1361 aa23.45■■□□□ 1.34
CPNE1-224ENST00000483359 TEFQ10587 303 aa23.45■■□□□ 1.34
CPNE1-224ENST00000483359 SF3B2Q13435 895 aaKnown RBP23.45■■□□□ 1.34
CPNE1-224ENST00000483359 SLC52A2Q9HAB3 445 aa23.45■■□□□ 1.34
CPNE1-224ENST00000483359 APBA3O96018 575 aa23.44■■□□□ 1.34
CPNE1-224ENST00000483359 TRIM35Q9UPQ4 493 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms