RNA–Protein interactions for RNA: ENST00000482563.1

RBM39-233, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 1,737 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-233	ENST00000482563	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	10.19	□□□□□ -0.78
RBM39-233	ENST00000482563	MAP4K4	O95819	1239 aa	Predicted RBP	10.19	□□□□□ -0.78
RBM39-233	ENST00000482563	LDHB	P07195	334 aa	Known RBP	10.19	□□□□□ -0.78
RBM39-233	ENST00000482563	DAB2	P98082	770 aa		10.19	□□□□□ -0.78
RBM39-233	ENST00000482563	TRIM50	Q86XT4	487 aa		10.19	□□□□□ -0.78
RBM39-233	ENST00000482563	OSBPL2	Q9H1P3	480 aa		10.19	□□□□□ -0.78
RBM39-233	ENST00000482563	ATP1A2	P50993	1020 aa		10.18	□□□□□ -0.78
RBM39-233	ENST00000482563	FKBP5	Q13451	457 aa	Predicted RBP	10.18	□□□□□ -0.78
RBM39-233	ENST00000482563	DESI1	Q6ICB0	168 aa		10.18	□□□□□ -0.78
RBM39-233	ENST00000482563	EXOC8	Q8IYI6	725 aa		10.18	□□□□□ -0.78
RBM39-233	ENST00000482563	MYH16	Q9H6N6	1097 aa		10.18	□□□□□ -0.78
RBM39-233	ENST00000482563	MRPL42	Q9Y6G3	142 aa	Known RBP	10.18	□□□□□ -0.78
RBM39-233	ENST00000482563	SORBS3	O60504	671 aa		10.17	□□□□□ -0.78
RBM39-233	ENST00000482563	PRPF40A	O75400	957 aa	Known RBP	10.17	□□□□□ -0.78
RBM39-233	ENST00000482563	MAP7D1	Q3KQU3	841 aa		10.17	□□□□□ -0.78
RBM39-233	ENST00000482563	CCDC181	Q5TID7	509 aa		10.17	□□□□□ -0.78
RBM39-233	ENST00000482563	SETDB2	Q96T68	719 aa		10.17	□□□□□ -0.78
RBM39-233	ENST00000482563	COLQ	Q9Y215	455 aa	Predicted RBP	10.17	□□□□□ -0.78
RBM39-233	ENST00000482563	NOP58	Q9Y2X3	529 aa	Known RBP	10.17	□□□□□ -0.78
RBM39-233	ENST00000482563	TRIM6-TRIM34	B2RNG4	842 aa		10.16	□□□□□ -0.78
RBM39-233	ENST00000482563	IGHA2	P01877	340 aa		10.16	□□□□□ -0.78
RBM39-233	ENST00000482563	NPR3	P17342	541 aa		10.16	□□□□□ -0.78
RBM39-233	ENST00000482563	BMS1	Q14692	1282 aa	Known RBP	10.16	□□□□□ -0.78
RBM39-233	ENST00000482563	RETREG3	Q86VR2	466 aa		10.16	□□□□□ -0.78
RBM39-233	ENST00000482563	BRINP2	Q9C0B6	783 aa		10.16	□□□□□ -0.78
RBM39-233	ENST00000482563	MRS2	Q9HD23	443 aa		10.16	□□□□□ -0.78
RBM39-233	ENST00000482563	WWC3	Q9ULE0	1092 aa		10.16	□□□□□ -0.78
RBM39-233	ENST00000482563	NOD1	Q9Y239	953 aa		10.16	□□□□□ -0.78
RBM39-233	ENST00000482563	ASTL	Q6HA08	431 aa	Predicted RBP	10.16	□□□□□ -0.78
RBM39-233	ENST00000482563	GAS2L2	Q8NHY3	880 aa		10.16	□□□□□ -0.78
RBM39-233	ENST00000482563	EMILIN1	Q9Y6C2	1016 aa		10.16	□□□□□ -0.78
RBM39-233	ENST00000482563	CLSTN1	O94985	981 aa		10.15	□□□□□ -0.78
RBM39-233	ENST00000482563	F12	P00748	615 aa	Predicted RBP	10.15	□□□□□ -0.78
RBM39-233	ENST00000482563	WEE1	P30291	646 aa		10.15	□□□□□ -0.78
RBM39-233	ENST00000482563	CCDC102B	Q68D86	513 aa		10.15	□□□□□ -0.78
RBM39-233	ENST00000482563	VTI1B	Q9UEU0	232 aa		10.15	□□□□□ -0.78
RBM39-233	ENST00000482563	ARID5A	Q03989	594 aa		10.14	□□□□□ -0.79
RBM39-233	ENST00000482563	GNL2	Q13823	731 aa	Known RBP	10.14	□□□□□ -0.79
RBM39-233	ENST00000482563	MCF2L2	Q86YR7	1114 aa		10.14	□□□□□ -0.79
RBM39-233	ENST00000482563	HSD3B2	P26439	372 aa		10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	RACK1	P63244	317 aa	Known RBP	10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	IRX6	P78412	446 aa	Predicted RBP	10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	TPCN2	Q8NHX9	752 aa		10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	HELQ	Q8TDG4	1101 aa		10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	MAPK8	P45983	427 aa		10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	ANAPC15	P60006	121 aa		10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	GTF2I	P78347	998 aa		10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	NAA30	Q147X3	362 aa	Predicted RBP	10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	TAF7L	Q5H9L4	462 aa		10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	SWT1	Q5T5J6	900 aa	Known RBP	10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	PACS2	Q86VP3	889 aa		10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	KHSRP	Q92945	711 aa	Known RBP eCLIP	10.13	□□□□□ -0.79	3e-14	■■■□□ 14.6
RBM39-233	ENST00000482563	CHPF2	Q9P2E5	772 aa		10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	MAP10	Q9P2G4	905 aa		10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	PCDHB9	Q9Y5E1	797 aa		10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	COL4A3BP	Q9Y5P4	624 aa		10.13	□□□□□ -0.79
RBM39-233	ENST00000482563	EHHADH	Q08426	723 aa		10.12	□□□□□ -0.79
RBM39-233	ENST00000482563	ZNF394	Q53GI3	561 aa		10.12	□□□□□ -0.79
RBM39-233	ENST00000482563	RPUSD2	Q8IZ73	545 aa	Known RBP	10.12	□□□□□ -0.79
RBM39-233	ENST00000482563	CCDC85A	Q96PX6	553 aa	Predicted RBP	10.12	□□□□□ -0.79
RBM39-233	ENST00000482563	DDX41	Q9UJV9	622 aa	Known RBP	10.12	□□□□□ -0.79
RBM39-233	ENST00000482563	FAN1	Q9Y2M0	1017 aa		10.12	□□□□□ -0.79
RBM39-233	ENST00000482563	PEX14	O75381	377 aa		10.11	□□□□□ -0.79
RBM39-233	ENST00000482563	NUDT7	P0C024	238 aa		10.11	□□□□□ -0.79
RBM39-233	ENST00000482563	IBSP	P21815	317 aa	Predicted RBP	10.11	□□□□□ -0.79
RBM39-233	ENST00000482563	PSMD2	Q13200	908 aa		10.11	□□□□□ -0.79
RBM39-233	ENST00000482563	PDE3B	Q13370	1112 aa		10.11	□□□□□ -0.79
RBM39-233	ENST00000482563	GORAB	Q5T7V8	394 aa		10.11	□□□□□ -0.79
RBM39-233	ENST00000482563	GRIPAP1	Q4V328	841 aa		10.1	□□□□□ -0.79
RBM39-233	ENST00000482563	PCDH12	Q9NPG4	1184 aa		10.1	□□□□□ -0.79
RBM39-233	ENST00000482563	BCCIP	Q9P287	314 aa	Known RBP eCLIP	10.1	□□□□□ -0.79
RBM39-233	ENST00000482563	INPP5F	Q9Y2H2	1132 aa		10.1	□□□□□ -0.79
RBM39-233	ENST00000482563	PCDHGB7	Q9Y5F8	929 aa		10.1	□□□□□ -0.79
RBM39-233	ENST00000482563	FGR	P09769	529 aa		10.1	□□□□□ -0.79
RBM39-233	ENST00000482563	MPST	P25325	297 aa		10.1	□□□□□ -0.79
RBM39-233	ENST00000482563	SOGA3	Q5TF21	947 aa		10.1	□□□□□ -0.79
RBM39-233	ENST00000482563	PCDHGA11	Q9Y5H2	935 aa		10.1	□□□□□ -0.79
RBM39-233	ENST00000482563	ATP6V1A	P38606	617 aa		10.09	□□□□□ -0.79
RBM39-233	ENST00000482563	PLCB3	Q01970	1234 aa		10.09	□□□□□ -0.79
RBM39-233	ENST00000482563	HINFP	Q9BQA5	517 aa		10.09	□□□□□ -0.79
RBM39-233	ENST00000482563	BCL2L12	Q9HB09	334 aa		10.09	□□□□□ -0.79
RBM39-233	ENST00000482563	IFT57	Q9NWB7	429 aa		10.09	□□□□□ -0.79
RBM39-233	ENST00000482563	CCDC194	A0A1B0GVG4	234 aa		10.08	□□□□□ -0.8
RBM39-233	ENST00000482563	PTCD1	O75127	700 aa	Known RBP	10.08	□□□□□ -0.8
RBM39-233	ENST00000482563	FAM13A	O94988	1023 aa		10.08	□□□□□ -0.8
RBM39-233	ENST00000482563	PROX2	Q3B8N5	592 aa		10.08	□□□□□ -0.8
RBM39-233	ENST00000482563	PLEKHG6	Q3KR16	790 aa		10.08	□□□□□ -0.8
RBM39-233	ENST00000482563	GPR182	O15218	404 aa		10.07	□□□□□ -0.8
RBM39-233	ENST00000482563	NDUFB5	O43674	189 aa		10.07	□□□□□ -0.8
RBM39-233	ENST00000482563	TSEN2	Q8NCE0	465 aa	Known RBP	10.07	□□□□□ -0.8
RBM39-233	ENST00000482563	STAG1	Q8WVM7	1258 aa		10.07	□□□□□ -0.8
RBM39-233	ENST00000482563	PRKD2	Q9BZL6	878 aa		10.07	□□□□□ -0.8
RBM39-233	ENST00000482563	CCDC87	Q9NVE4	849 aa		10.07	□□□□□ -0.8
RBM39-233	ENST00000482563	CTSH	P09668	335 aa		10.07	□□□□□ -0.8
RBM39-233	ENST00000482563	POTEI	P0CG38	1075 aa		10.07	□□□□□ -0.8
RBM39-233	ENST00000482563	ZCRB1	Q8TBF4	217 aa	Known RBP	10.07	□□□□□ -0.8
RBM39-233	ENST00000482563	RNF187	Q5TA31	235 aa	Predicted RBP	10.06	□□□□□ -0.8
RBM39-233	ENST00000482563	C3orf67	Q6ZVT6	689 aa		10.06	□□□□□ -0.8
RBM39-233	ENST00000482563	FILIP1	Q7Z7B0	1213 aa		10.06	□□□□□ -0.8
RBM39-233	ENST00000482563	IRF2BPL	Q9H1B7	796 aa		10.06	□□□□□ -0.8

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