RNA–Protein interactions for RNA: ENST00000477547.6

SEC13-215, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 1,313 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-215ENST00000477547 MEGF6O75095 1541 aa20.52■□□□□ 0.87
SEC13-215ENST00000477547 DISP2A7MBM2 1401 aa20.51■□□□□ 0.87
SEC13-215ENST00000477547 U2SURPO15042 1029 aaKnown RBP20.51■□□□□ 0.87
SEC13-215ENST00000477547 MRS2Q9HD23 443 aa20.51■□□□□ 0.87
SEC13-215ENST00000477547 CCDC184Q52MB2 194 aa20.5■□□□□ 0.87
SEC13-215ENST00000477547 NUDCQ9Y266 331 aa20.5■□□□□ 0.87
SEC13-215ENST00000477547 KDRP35968 1356 aa20.49■□□□□ 0.87
SEC13-215ENST00000477547 TRIM37O94972 964 aa20.49■□□□□ 0.87
SEC13-215ENST00000477547 MIER1Q8N108 512 aa20.49■□□□□ 0.87
SEC13-215ENST00000477547 TCP11L2Q8N4U5 519 aa20.49■□□□□ 0.87
SEC13-215ENST00000477547 CAMKK2Q96RR4 588 aa20.49■□□□□ 0.87
SEC13-215ENST00000477547 VIRMAQ69YN4 1812 aaKnown RBP20.48■□□□□ 0.87
SEC13-215ENST00000477547 THRAP3Q9Y2W1 955 aaKnown RBP20.47■□□□□ 0.87
SEC13-215ENST00000477547 OVOS2A0A0G2JMS6 1433 aa20.47■□□□□ 0.87
SEC13-215ENST00000477547 TNS2Q63HR2 1409 aa20.47■□□□□ 0.87
SEC13-215ENST00000477547 U2AF1L5P0DN76 240 aaPredicted RBP20.46■□□□□ 0.87
SEC13-215ENST00000477547 U2AF1Q01081 240 aaKnown RBP eCLIP20.46■□□□□ 0.87
SEC13-215ENST00000477547 WDR43Q15061 677 aaKnown RBP eCLIP20.46■□□□□ 0.871e-6■■■□□ 17.5
SEC13-215ENST00000477547 AEBP1Q8IUX7 1158 aa20.46■□□□□ 0.87
SEC13-215ENST00000477547 HMOX1P09601 288 aa20.45■□□□□ 0.86
SEC13-215ENST00000477547 SULT6B1Q6IMI4 303 aa20.45■□□□□ 0.86
SEC13-215ENST00000477547 BARGINQ6ZT62 677 aa20.45■□□□□ 0.86
SEC13-215ENST00000477547 DLG5Q8TDM6 1919 aa20.44■□□□□ 0.86
SEC13-215ENST00000477547 CCER2I3L3R5 266 aa20.44■□□□□ 0.86
SEC13-215ENST00000477547 APBA3O96018 575 aa20.44■□□□□ 0.86
SEC13-215ENST00000477547 IL2RBP14784 551 aa20.44■□□□□ 0.86
SEC13-215ENST00000477547 RAPGEF4Q8WZA2 1011 aa20.44■□□□□ 0.86
SEC13-215ENST00000477547 PLEKHG2Q9H7P9 1386 aa20.42■□□□□ 0.86
SEC13-215ENST00000477547 TATP17735 454 aaPredicted RBP20.41■□□□□ 0.86
SEC13-215ENST00000477547 FAM196AQ6ZSG2 479 aa20.41■□□□□ 0.86
SEC13-215ENST00000477547 CDCA7Q9BWT1 371 aaPredicted RBP20.41■□□□□ 0.86
SEC13-215ENST00000477547 RSPH6AQ9H0K4 717 aa20.4■□□□□ 0.86
SEC13-215ENST00000477547 DOT1LQ8TEK3 1739 aa20.39■□□□□ 0.85
SEC13-215ENST00000477547 RREB1Q92766 1687 aa20.38■□□□□ 0.85
SEC13-215ENST00000477547 NUP188Q5SRE5 1749 aa20.38■□□□□ 0.85
SEC13-215ENST00000477547 PRKAR2BP31323 418 aa20.38■□□□□ 0.85
SEC13-215ENST00000477547 TOGARAM1Q9Y4F4 1720 aa20.36■□□□□ 0.85
SEC13-215ENST00000477547 PNISRQ8TF01 805 aaKnown RBP20.36■□□□□ 0.85
SEC13-215ENST00000477547 SCN11AQ9UI33 1791 aa20.36■□□□□ 0.85
SEC13-215ENST00000477547 FCHSD2O94868 740 aa20.35■□□□□ 0.85
SEC13-215ENST00000477547 DDB1Q16531 1140 aa20.35■□□□□ 0.85
SEC13-215ENST00000477547 PPP1R1BQ9UD71 204 aaPredicted RBP20.35■□□□□ 0.85
SEC13-215ENST00000477547 SBF2Q86WG5 1849 aa20.35■□□□□ 0.85
SEC13-215ENST00000477547 NBPF14Q5TI25 921 aa20.34■□□□□ 0.85
SEC13-215ENST00000477547 ADAMTS8Q9UP79 889 aa20.34■□□□□ 0.85
SEC13-215ENST00000477547 PCDH11XQ9BZA7 1347 aa20.33■□□□□ 0.85
SEC13-215ENST00000477547 PCDH11YQ9BZA8 1340 aa20.33■□□□□ 0.85
SEC13-215ENST00000477547 MAPK8IP3Q9UPT6 1336 aa20.33■□□□□ 0.85
SEC13-215ENST00000477547 FAM9BQ8IZU0 186 aa20.33■□□□□ 0.85
SEC13-215ENST00000477547 KAT6BQ8WYB5 2073 aa20.33■□□□□ 0.84
SEC13-215ENST00000477547 ADAMTS7Q9UKP4 1686 aa20.33■□□□□ 0.84
SEC13-215ENST00000477547 NEFMP07197 916 aa20.32■□□□□ 0.84
SEC13-215ENST00000477547 CCDC146Q8IYE0 955 aa20.32■□□□□ 0.84
SEC13-215ENST00000477547 PNNQ9H307 717 aaKnown RBP20.32■□□□□ 0.84
SEC13-215ENST00000477547 SPON1Q9HCB6 807 aa20.32■□□□□ 0.84
SEC13-215ENST00000477547 SPG7Q9UQ90 795 aa20.32■□□□□ 0.84
SEC13-215ENST00000477547 ITGB4P16144 1822 aa20.32■□□□□ 0.84
SEC13-215ENST00000477547 PDE3BQ13370 1112 aa20.31■□□□□ 0.84
SEC13-215ENST00000477547 PLEKHO1Q53GL0 409 aaPredicted RBP20.31■□□□□ 0.84
SEC13-215ENST00000477547 ZCRB1Q8TBF4 217 aaKnown RBP20.31■□□□□ 0.84
SEC13-215ENST00000477547 NHSQ6T4R5 1651 aa20.31■□□□□ 0.84
SEC13-215ENST00000477547 EXOC5O00471 708 aa20.3■□□□□ 0.84
SEC13-215ENST00000477547 KCNQ2O43526 872 aa20.3■□□□□ 0.84
SEC13-215ENST00000477547 AMOTQ4VCS5 1084 aa20.3■□□□□ 0.84
SEC13-215ENST00000477547 ZNF530Q6P9A1 599 aaPredicted RBP20.3■□□□□ 0.84
SEC13-215ENST00000477547 PLEKHF1Q96S99 279 aa20.3■□□□□ 0.84
SEC13-215ENST00000477547 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.3■□□□□ 0.844e-7■■■□□ 17.9
SEC13-215ENST00000477547 DCAF8L1A6NGE4 600 aa20.28■□□□□ 0.84
SEC13-215ENST00000477547 RUNDC1Q96C34 613 aa20.28■□□□□ 0.84
SEC13-215ENST00000477547 PHACTR3Q96KR7 559 aa20.28■□□□□ 0.84
SEC13-215ENST00000477547 GAS2L2Q8NHY3 880 aa20.27■□□□□ 0.84
SEC13-215ENST00000477547 SIPA1L3O60292 1781 aaPredicted RBP20.27■□□□□ 0.84
SEC13-215ENST00000477547 MAP3K5Q99683 1374 aa20.27■□□□□ 0.84
SEC13-215ENST00000477547 MTHFSDQ2M296 383 aaKnown RBP20.27■□□□□ 0.83
SEC13-215ENST00000477547 C1orf141Q5JVX7 400 aa20.27■□□□□ 0.83
SEC13-215ENST00000477547 DDX54Q8TDD1 881 aaKnown RBP20.27■□□□□ 0.83
SEC13-215ENST00000477547 CYP27B1O15528 508 aa20.26■□□□□ 0.83
SEC13-215ENST00000477547 KDM6AO15550 1401 aaPredicted RBP20.25■□□□□ 0.83
SEC13-215ENST00000477547 BTAF1O14981 1849 aa20.25■□□□□ 0.83
SEC13-215ENST00000477547 PHKG2P15735 406 aa20.25■□□□□ 0.83
SEC13-215ENST00000477547 IFNL2Q8IZJ0 200 aa20.25■□□□□ 0.83
SEC13-215ENST00000477547 MARCH10Q8NA82 808 aaPredicted RBP20.25■□□□□ 0.83
SEC13-215ENST00000477547 MRC1P22897 1456 aa20.24■□□□□ 0.83
SEC13-215ENST00000477547 NFE2L2Q16236 605 aa20.23■□□□□ 0.83
SEC13-215ENST00000477547 AKAP4Q5JQC9 854 aa20.22■□□□□ 0.83
SEC13-215ENST00000477547 BCL9O00512 1426 aa20.22■□□□□ 0.83
SEC13-215ENST00000477547 RRP7AQ9Y3A4 280 aaKnown RBP20.21■□□□□ 0.83
SEC13-215ENST00000477547 PAPPAQ13219 1627 aa20.2■□□□□ 0.82
SEC13-215ENST00000477547 APAF1O14727 1248 aa20.2■□□□□ 0.82
SEC13-215ENST00000477547 HSP90AB1P08238 724 aaKnown RBP20.2■□□□□ 0.82
SEC13-215ENST00000477547 TMPOP42166 694 aaKnown RBP20.2■□□□□ 0.82
SEC13-215ENST00000477547 PDGFDQ9GZP0 370 aaPredicted RBP20.2■□□□□ 0.82
SEC13-215ENST00000477547 ANO8Q9HCE9 1232 aaPredicted RBP20.2■□□□□ 0.82
SEC13-215ENST00000477547 GNAT3A8MTJ3 354 aa20.19■□□□□ 0.82
SEC13-215ENST00000477547 ZNF784Q8NCA9 323 aaPredicted RBP20.19■□□□□ 0.82
SEC13-215ENST00000477547 KDM3BQ7LBC6 1761 aa20.17■□□□□ 0.82
SEC13-215ENST00000477547 CASZ1Q86V15 1759 aa20.17■□□□□ 0.82
SEC13-215ENST00000477547 SENP3-EIF4A1A0A087X0R7 540 aa20.17■□□□□ 0.82
SEC13-215ENST00000477547 NKX1-1Q15270 411 aaPredicted RBP20.17■□□□□ 0.82
SEC13-215ENST00000477547 NEUROD2Q15784 382 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms