RNA–Protein interactions for RNA: ENST00000473515.5

SCML4-209, Transcript of Scm polycomb group protein like 4, human

TSL 2

Gene SCML4, Length 4,297 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCML4-209	ENST00000473515	SYNM	O15061	1565 aa		11.37	□□□□□ -0.59
SCML4-209	ENST00000473515	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.37	□□□□□ -0.59
SCML4-209	ENST00000473515	PHF14	O94880	888 aa		11.37	□□□□□ -0.59
SCML4-209	ENST00000473515	ANXA1	P04083	346 aa		11.37	□□□□□ -0.59
SCML4-209	ENST00000473515	TTC37	Q6PGP7	1564 aa		11.37	□□□□□ -0.59
SCML4-209	ENST00000473515	ESPN	B1AK53	854 aa		11.37	□□□□□ -0.59
SCML4-209	ENST00000473515	TSPYL6	Q8N831	410 aa		11.37	□□□□□ -0.59
SCML4-209	ENST00000473515	C8orf58	Q8NAV2	365 aa		11.37	□□□□□ -0.59
SCML4-209	ENST00000473515	SMC3	Q9UQE7	1217 aa		11.37	□□□□□ -0.59
SCML4-209	ENST00000473515	ERCC6L2	Q5T890	1561 aa		11.36	□□□□□ -0.59
SCML4-209	ENST00000473515	YTHDC2	Q9H6S0	1430 aa	Known RBP	11.36	□□□□□ -0.59
SCML4-209	ENST00000473515	ZMYM3	Q14202	1370 aa		11.36	□□□□□ -0.59
SCML4-209	ENST00000473515	EIF4A2	Q14240	407 aa	Known RBP	11.36	□□□□□ -0.59
SCML4-209	ENST00000473515	SF3A1	Q15459	793 aa	Known RBP	11.36	□□□□□ -0.59
SCML4-209	ENST00000473515	RNF20	Q5VTR2	975 aa		11.36	□□□□□ -0.59
SCML4-209	ENST00000473515	NUTM1	Q86Y26	1132 aa		11.36	□□□□□ -0.59
SCML4-209	ENST00000473515	PTCD1	O75127	700 aa	Known RBP	11.36	□□□□□ -0.59
SCML4-209	ENST00000473515	NPAT	Q14207	1427 aa		11.36	□□□□□ -0.59
SCML4-209	ENST00000473515	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.36	□□□□□ -0.59
SCML4-209	ENST00000473515	UNC13B	O14795	1591 aa		11.35	□□□□□ -0.59
SCML4-209	ENST00000473515	SPG7	Q9UQ90	795 aa		11.35	□□□□□ -0.59
SCML4-209	ENST00000473515	WASHC4	Q2M389	1173 aa		11.35	□□□□□ -0.59
SCML4-209	ENST00000473515	MPND	Q8N594	471 aa		11.35	□□□□□ -0.59
SCML4-209	ENST00000473515	TNPO1	Q92973	898 aa	Known RBP	11.35	□□□□□ -0.59
SCML4-209	ENST00000473515	GOLGA6L6	A8MZA4	724 aa		11.35	□□□□□ -0.59
SCML4-209	ENST00000473515	PANK2	Q9BZ23	570 aa		11.35	□□□□□ -0.59
SCML4-209	ENST00000473515	ATP6V1D	Q9Y5K8	247 aa		11.35	□□□□□ -0.59
SCML4-209	ENST00000473515	CSPP1	Q1MSJ5	1256 aa		11.35	□□□□□ -0.59
SCML4-209	ENST00000473515	FLII	Q13045	1269 aa		11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	KIF3A	Q9Y496	699 aa		11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	KAT6B	Q8WYB5	2073 aa		11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	MYO5C	Q9NQX4	1742 aa		11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	ATP10A	O60312	1499 aa		11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	PREX2	Q70Z35	1606 aa		11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	USP19	O94966	1318 aa		11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	UGGT1	Q9NYU2	1555 aa		11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	NRDC	O43847	1150 aa		11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	SSFA2	P28290	1259 aa		11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	CCDC27	Q2M243	656 aa		11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	IQGAP3	Q86VI3	1631 aa		11.34	□□□□□ -0.59
SCML4-209	ENST00000473515	LRRFIP2	Q9Y608	721 aa	Known RBP	11.33	□□□□□ -0.6
SCML4-209	ENST00000473515	IL16	Q14005	1332 aa		11.33	□□□□□ -0.6
SCML4-209	ENST00000473515	YEATS2	Q9ULM3	1422 aa		11.33	□□□□□ -0.6
SCML4-209	ENST00000473515	TSHZ3	Q63HK5	1081 aa		11.33	□□□□□ -0.6
SCML4-209	ENST00000473515	KCNA6	P17658	529 aa		11.33	□□□□□ -0.6
SCML4-209	ENST00000473515	CHRNA2	Q15822	529 aa		11.33	□□□□□ -0.6
SCML4-209	ENST00000473515	PUS7	Q96PZ0	661 aa	Known RBP	11.33	□□□□□ -0.6
SCML4-209	ENST00000473515	AACS	Q86V21	672 aa		11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	MEIS3	Q99687	375 aa		11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	XRCC6	P12956	609 aa	Known RBP eCLIP	11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	CWC27	Q6UX04	472 aa	Known RBP	11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	KRT28	Q7Z3Y7	464 aa		11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	RRAGD	Q9NQL2	400 aa	Predicted RBP	11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	ABCC1	P33527	1531 aa		11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	PTPRT	O14522	1441 aa		11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	CHD1	O14646	1710 aa		11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	NUTM2E	B1AL46	878 aa	Predicted RBP	11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	LRRFIP1	Q32MZ4	808 aa	Known RBP	11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	TBC1D9	Q6ZT07	1266 aa		11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	UPF3B	Q9BZI7	483 aa	Known RBP	11.32	□□□□□ -0.6
SCML4-209	ENST00000473515	CPLX1	O14810	134 aa		11.31	□□□□□ -0.6
SCML4-209	ENST00000473515	CCDC173	Q0VFZ6	552 aa		11.31	□□□□□ -0.6
SCML4-209	ENST00000473515	KDM5A	P29375	1690 aa	Known RBP	11.31	□□□□□ -0.6
SCML4-209	ENST00000473515	CDK11B	P21127	795 aa	Known RBP	11.31	□□□□□ -0.6
SCML4-209	ENST00000473515	RBM10	P98175	930 aa	Known RBP	11.31	□□□□□ -0.6
SCML4-209	ENST00000473515	VPS37D	Q86XT2	251 aa		11.31	□□□□□ -0.6
SCML4-209	ENST00000473515	VAMP4	O75379	141 aa		11.3	□□□□□ -0.6
SCML4-209	ENST00000473515	MTHFSD	Q2M296	383 aa	Known RBP	11.3	□□□□□ -0.6
SCML4-209	ENST00000473515	MX1	P20591	662 aa		11.3	□□□□□ -0.6
SCML4-209	ENST00000473515	HDAC1	Q13547	482 aa	Predicted RBP	11.3	□□□□□ -0.6
SCML4-209	ENST00000473515	PI4KAP2	A4QPH2	592 aa		11.3	□□□□□ -0.6
SCML4-209	ENST00000473515	TRDN	Q13061	729 aa		11.3	□□□□□ -0.6
SCML4-209	ENST00000473515	ERC1	Q8IUD2	1116 aa		11.3	□□□□□ -0.6
SCML4-209	ENST00000473515	PI4KAP1	Q8N8J0	262 aa		11.3	□□□□□ -0.6
SCML4-209	ENST00000473515	BICD2	Q8TD16	824 aa		11.3	□□□□□ -0.6
SCML4-209	ENST00000473515	LRRC59	Q96AG4	307 aa	Known RBP	11.3	□□□□□ -0.6
SCML4-209	ENST00000473515	DNAAF4	Q8WXU2	420 aa		11.29	□□□□□ -0.6
SCML4-209	ENST00000473515	MAP3K19	Q56UN5	1328 aa		11.29	□□□□□ -0.6
SCML4-209	ENST00000473515	KDM4A	O75164	1064 aa		11.29	□□□□□ -0.6
SCML4-209	ENST00000473515	BMP2KL	Q5H9B9	411 aa		11.29	□□□□□ -0.6
SCML4-209	ENST00000473515	ANTXR1	Q9H6X2	564 aa		11.29	□□□□□ -0.6
SCML4-209	ENST00000473515	PLXNC1	O60486	1568 aa		11.29	□□□□□ -0.6
SCML4-209	ENST00000473515		G3V3G9	751 aa		11.29	□□□□□ -0.6
SCML4-209	ENST00000473515	CLCN1	P35523	988 aa		11.29	□□□□□ -0.6
SCML4-209	ENST00000473515	AMOT	Q4VCS5	1084 aa		11.29	□□□□□ -0.6
SCML4-209	ENST00000473515	DCAF8	Q5TAQ9	597 aa		11.29	□□□□□ -0.6
SCML4-209	ENST00000473515	MRPL50	Q8N5N7	158 aa	Known RBP	11.29	□□□□□ -0.6
SCML4-209	ENST00000473515	ANKRD24	Q8TF21	1146 aa		11.29	□□□□□ -0.6
SCML4-209	ENST00000473515	EYA1	Q99502	592 aa		11.29	□□□□□ -0.6
SCML4-209	ENST00000473515	CDC42BPB	Q9Y5S2	1711 aa		11.28	□□□□□ -0.6
SCML4-209	ENST00000473515	RNF17	Q9BXT8	1623 aa	Known RBP	11.28	□□□□□ -0.6
SCML4-209	ENST00000473515	NUCB1	Q02818	461 aa		11.28	□□□□□ -0.6
SCML4-209	ENST00000473515	CPLX2	Q6PUV4	134 aa	Known RBP	11.28	□□□□□ -0.6
SCML4-209	ENST00000473515	KIF6	Q6ZMV9	814 aa		11.28	□□□□□ -0.6
SCML4-209	ENST00000473515	RALYL	Q86SE5	291 aa	Known RBP	11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms