RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TAX1BP1Q86VP1 789 aa15.53■□□□□ 0.08
COL6A3-209ENST00000472056 FMNL2Q96PY5 1086 aa15.53■□□□□ 0.08
COL6A3-209ENST00000472056 KRT18P05783 430 aaKnown RBP15.53■□□□□ 0.08
COL6A3-209ENST00000472056 PAFAH1B1P43034 410 aa15.53■□□□□ 0.08
COL6A3-209ENST00000472056 ALS2CR12Q96Q35 445 aa15.52■□□□□ 0.08
COL6A3-209ENST00000472056 KIF20AO95235 890 aa15.52■□□□□ 0.08
COL6A3-209ENST00000472056 WASHC4Q2M389 1173 aa15.52■□□□□ 0.08
COL6A3-209ENST00000472056 HOOK3Q86VS8 718 aa15.52■□□□□ 0.08
COL6A3-209ENST00000472056 STMN4Q9H169 189 aaPredicted RBP15.52■□□□□ 0.08
COL6A3-209ENST00000472056 CCDC150Q8NCX0 1101 aa15.52■□□□□ 0.07
COL6A3-209ENST00000472056 PNISRQ8TF01 805 aaKnown RBP15.52■□□□□ 0.07
COL6A3-209ENST00000472056 CCDC196A0A1B0GTZ2 297 aa15.51■□□□□ 0.07
COL6A3-209ENST00000472056 BLOC1S2Q6QNY1 142 aa15.51■□□□□ 0.07
COL6A3-209ENST00000472056 FBXW7Q969H0 707 aa15.51■□□□□ 0.07
COL6A3-209ENST00000472056 CEP63Q96MT8 703 aa15.51■□□□□ 0.07
COL6A3-209ENST00000472056 MVPQ14764 893 aaKnown RBP15.51■□□□□ 0.07
COL6A3-209ENST00000472056 TRAK1Q9UPV9 953 aa15.51■□□□□ 0.07
COL6A3-209ENST00000472056 ATAD2Q6PL18 1390 aa15.51■□□□□ 0.07
COL6A3-209ENST00000472056 TIAM1Q13009 1591 aa15.51■□□□□ 0.07
COL6A3-209ENST00000472056 PANK1Q8TE04 598 aa15.51■□□□□ 0.07
COL6A3-209ENST00000472056 ERICH4A6NGS2 130 aa15.5■□□□□ 0.07
COL6A3-209ENST00000472056 ZNF287Q9HBT7 754 aa15.5■□□□□ 0.07
COL6A3-209ENST00000472056 IFI16Q16666 785 aaKnown RBP15.5■□□□□ 0.07
COL6A3-209ENST00000472056 CCDC27Q2M243 656 aa15.5■□□□□ 0.07
COL6A3-209ENST00000472056 CFAP100Q494V2 611 aa15.5■□□□□ 0.07
COL6A3-209ENST00000472056 FKBP15Q5T1M5 1219 aa15.5■□□□□ 0.07
COL6A3-209ENST00000472056 NSRP1Q9H0G5 558 aaKnown RBP15.5■□□□□ 0.07
COL6A3-209ENST00000472056 BRPF1P55201 1214 aaPredicted RBP15.5■□□□□ 0.07
COL6A3-209ENST00000472056 CHD1LQ86WJ1 897 aa15.5■□□□□ 0.07
COL6A3-209ENST00000472056 ITSN2Q9NZM3 1697 aa15.5■□□□□ 0.07
COL6A3-209ENST00000472056 HSPA4P34932 840 aa15.5■□□□□ 0.07
COL6A3-209ENST00000472056 RIC3Q7Z5B4 369 aa15.5■□□□□ 0.07
COL6A3-209ENST00000472056 DDX19AQ9NUU7 478 aaKnown RBP15.5■□□□□ 0.07
COL6A3-209ENST00000472056 CCDC141Q6ZP82 1450 aa15.5■□□□□ 0.07
COL6A3-209ENST00000472056 GOLIM4O00461 696 aa15.49■□□□□ 0.07
COL6A3-209ENST00000472056 ATF7IPQ6VMQ6 1270 aa15.49■□□□□ 0.07
COL6A3-209ENST00000472056 SREK1Q8WXA9 508 aaKnown RBP15.49■□□□□ 0.07
COL6A3-209ENST00000472056 CUL7Q14999 1698 aa15.49■□□□□ 0.07
COL6A3-209ENST00000472056 CKAP4Q07065 602 aaKnown RBP15.49■□□□□ 0.07
COL6A3-209ENST00000472056 CCDC158Q5M9N0 1113 aa15.49■□□□□ 0.07
COL6A3-209ENST00000472056 PLVAPQ9BX97 442 aa15.49■□□□□ 0.07
COL6A3-209ENST00000472056 AKNAQ7Z591 1439 aa15.49■□□□□ 0.07
COL6A3-209ENST00000472056 KANK3Q6NY19 840 aa15.49■□□□□ 0.07
COL6A3-209ENST00000472056 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.49■□□□□ 0.07
COL6A3-209ENST00000472056 SMARCC1Q92922 1105 aaPredicted RBP15.49■□□□□ 0.07
COL6A3-209ENST00000472056 SH3BGRP55822 239 aaPredicted RBP15.49■□□□□ 0.07
COL6A3-209ENST00000472056 RAB34Q9BZG1 259 aa15.49■□□□□ 0.07
COL6A3-209ENST00000472056 SETSIPP0DME0 302 aa15.48■□□□□ 0.07
COL6A3-209ENST00000472056 IFFO1Q0D2I5 559 aa15.48■□□□□ 0.07
COL6A3-209ENST00000472056 U3KPZ7 1027 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-209ENST00000472056 EIF5P55010 431 aaKnown RBP15.48■□□□□ 0.07
COL6A3-209ENST00000472056 RAB11FIP3O75154 756 aa15.48■□□□□ 0.07
COL6A3-209ENST00000472056 SSR1P43307 286 aaKnown RBP15.48■□□□□ 0.07
COL6A3-209ENST00000472056 ARFGAP3Q9NP61 516 aa15.48■□□□□ 0.07
COL6A3-209ENST00000472056 ABCC11Q96J66 1382 aa15.48■□□□□ 0.07
COL6A3-209ENST00000472056 ANKRD50Q9ULJ7 1429 aa15.48■□□□□ 0.07
COL6A3-209ENST00000472056 PDZRN3Q9UPQ7 1066 aa15.48■□□□□ 0.07
COL6A3-209ENST00000472056 CCDC69A6NI79 296 aa15.47■□□□□ 0.07
COL6A3-209ENST00000472056 STX1AQ16623 288 aa15.47■□□□□ 0.07
COL6A3-209ENST00000472056 DDX46Q7L014 1031 aaKnown RBP15.47■□□□□ 0.07
COL6A3-209ENST00000472056 TOP1P11387 765 aaKnown RBP15.46■□□□□ 0.07
COL6A3-209ENST00000472056 CLCN1P35523 988 aa15.46■□□□□ 0.07
COL6A3-209ENST00000472056 AK9Q5TCS8 1911 aa15.46■□□□□ 0.07
COL6A3-209ENST00000472056 FAM114A1Q8IWE2 563 aa15.46■□□□□ 0.07
COL6A3-209ENST00000472056 PAF1Q8N7H5 531 aa15.46■□□□□ 0.07
COL6A3-209ENST00000472056 MNAT1P51948 309 aa15.46■□□□□ 0.07
COL6A3-209ENST00000472056 SKIDA1Q1XH10 827 aa15.46■□□□□ 0.07
COL6A3-209ENST00000472056 EIF2S2P20042 333 aaKnown RBP15.46■□□□□ 0.07
COL6A3-209ENST00000472056 ELL2O00472 640 aaPredicted RBP15.46■□□□□ 0.06
COL6A3-209ENST00000472056 SURF6O75683 361 aaKnown RBP15.46■□□□□ 0.06
COL6A3-209ENST00000472056 CEP112Q8N8E3 955 aa15.46■□□□□ 0.06
COL6A3-209ENST00000472056 TTC14Q96N46 770 aa15.46■□□□□ 0.06
COL6A3-209ENST00000472056 GTF2A1P52655 376 aaPredicted RBP15.46■□□□□ 0.06
COL6A3-209ENST00000472056 SYCE3A1L190 88 aa15.45■□□□□ 0.06
COL6A3-209ENST00000472056 NEUROD6Q96NK8 337 aa15.44■□□□□ 0.06
COL6A3-209ENST00000472056 CLIP2Q9UDT6 1046 aa15.44■□□□□ 0.06
COL6A3-209ENST00000472056 HNRNPMP52272 730 aaKnown RBP eCLIP15.44■□□□□ 0.06
COL6A3-209ENST00000472056 TSG101Q99816 390 aa15.44■□□□□ 0.06
COL6A3-209ENST00000472056 YEATS4O95619 227 aa15.44■□□□□ 0.06
COL6A3-209ENST00000472056 CCDC172P0C7W6 258 aa15.44■□□□□ 0.06
COL6A3-209ENST00000472056 RPAP2Q8IXW5 612 aaPredicted RBP15.44■□□□□ 0.06
COL6A3-209ENST00000472056 KIF6Q6ZMV9 814 aa15.44■□□□□ 0.06
COL6A3-209ENST00000472056 EVA1CP58658 441 aa15.44■□□□□ 0.06
COL6A3-209ENST00000472056 FAM193AP78312 1265 aa15.44■□□□□ 0.06
COL6A3-209ENST00000472056 FMNL3Q8IVF7 1028 aa15.43■□□□□ 0.06
COL6A3-209ENST00000472056 PIP4K2BP78356 416 aa15.43■□□□□ 0.06
COL6A3-209ENST00000472056 FERMT1Q9BQL6 677 aa15.43■□□□□ 0.06
COL6A3-209ENST00000472056 BCCIPQ9P287 314 aaKnown RBP eCLIP15.43■□□□□ 0.06
COL6A3-209ENST00000472056 TNNT1P13805 278 aa15.43■□□□□ 0.06
COL6A3-209ENST00000472056 TANGO6Q9C0B7 1094 aa15.43■□□□□ 0.06
COL6A3-209ENST00000472056 PDRG1Q9NUG6 133 aa15.43■□□□□ 0.06
COL6A3-209ENST00000472056 WDR97A6NE52 1622 aa15.43■□□□□ 0.06
COL6A3-209ENST00000472056 NCOA2Q15596 1464 aa15.43■□□□□ 0.06
COL6A3-209ENST00000472056 CETN1Q12798 172 aa15.43■□□□□ 0.06
COL6A3-209ENST00000472056 UBE2HP62256 183 aa15.43■□□□□ 0.06
COL6A3-209ENST00000472056 DAAM2Q86T65 1068 aa15.43■□□□□ 0.06
COL6A3-209ENST00000472056 CTAGE1Q96RT6 745 aa15.43■□□□□ 0.06
COL6A3-209ENST00000472056 IRX3P78415 501 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-209ENST00000472056 KIF4BQ2VIQ3 1234 aa15.42■□□□□ 0.06
COL6A3-209ENST00000472056 WDR66Q8TBY9 1149 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms