RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 KDF1Q8NAX2 398 aaPredicted RBP11.07□□□□□ -0.64
SYNE1-218ENST00000468937 TRAK2O60296 914 aa11.06□□□□□ -0.64
SYNE1-218ENST00000468937 FNBP4Q8N3X1 1017 aaPredicted RBP11.06□□□□□ -0.64
SYNE1-218ENST00000468937 PLPP7Q8NBV4 271 aa11.06□□□□□ -0.64
SYNE1-218ENST00000468937 CDCA7Q9BWT1 371 aaPredicted RBP11.06□□□□□ -0.64
SYNE1-218ENST00000468937 OSBPL3Q9H4L5 887 aa11.06□□□□□ -0.64
SYNE1-218ENST00000468937 NXF1Q9UBU9 619 aaKnown RBP11.06□□□□□ -0.64
SYNE1-218ENST00000468937 POM121CA8CG34 1229 aa11.05□□□□□ -0.64
SYNE1-218ENST00000468937 CTSOP43234 321 aaPredicted RBP11.05□□□□□ -0.64
SYNE1-218ENST00000468937 OXLD1Q5BKU9 147 aa11.05□□□□□ -0.64
SYNE1-218ENST00000468937 NPAS3Q8IXF0 933 aa11.05□□□□□ -0.64
SYNE1-218ENST00000468937 NFATC2IPQ8NCF5 419 aa11.05□□□□□ -0.64
SYNE1-218ENST00000468937 DNMT3LQ9UJW3 386 aa11.05□□□□□ -0.64
SYNE1-218ENST00000468937 FIGNL2A6NMB9 653 aa11.04□□□□□ -0.64
SYNE1-218ENST00000468937 SOBPA7XYQ1 873 aa11.04□□□□□ -0.64
SYNE1-218ENST00000468937 LZTS3O60299 673 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-218ENST00000468937 GNRH1P01148 92 aa11.04□□□□□ -0.64
SYNE1-218ENST00000468937 TSGA10IPQ3SY00 556 aa11.04□□□□□ -0.64
SYNE1-218ENST00000468937 HDGFL1Q5TGJ6 251 aa11.04□□□□□ -0.64
SYNE1-218ENST00000468937 A0A1W2PRU2 124 aa11.03□□□□□ -0.64
SYNE1-218ENST00000468937 TERTO14746 1132 aaKnown RBP11.03□□□□□ -0.64
SYNE1-218ENST00000468937 SLC16A10Q8TF71 515 aa11.03□□□□□ -0.64
SYNE1-218ENST00000468937 NLRP3Q96P20 1036 aa11.03□□□□□ -0.64
SYNE1-218ENST00000468937 GTF3C3Q9Y5Q9 886 aa11.03□□□□□ -0.64
SYNE1-218ENST00000468937 MEN1O00255 615 aa11.02□□□□□ -0.65
SYNE1-218ENST00000468937 SKIP12755 728 aa11.02□□□□□ -0.65
SYNE1-218ENST00000468937 GPC1P35052 558 aa11.02□□□□□ -0.65
SYNE1-218ENST00000468937 RNF144AP50876 292 aaPredicted RBP11.01□□□□□ -0.65
SYNE1-218ENST00000468937 CLN3Q13286 438 aa11.01□□□□□ -0.65
SYNE1-218ENST00000468937 RNF217Q8TC41 542 aa11.01□□□□□ -0.65
SYNE1-218ENST00000468937 PIK3CDO00329 1044 aa11□□□□□ -0.65
SYNE1-218ENST00000468937 WFS1O76024 890 aa11□□□□□ -0.65
SYNE1-218ENST00000468937 EML3Q32P44 896 aa11□□□□□ -0.65
SYNE1-218ENST00000468937 ESCO1Q5FWF5 840 aa11□□□□□ -0.65
SYNE1-218ENST00000468937 TREML4Q6UXN2 200 aa11□□□□□ -0.65
SYNE1-218ENST00000468937 ARHGEF10LQ9HCE6 1279 aa11□□□□□ -0.65
SYNE1-218ENST00000468937 LYSMD3Q7Z3D4 306 aa10.99□□□□□ -0.65
SYNE1-218ENST00000468937 ADAMTS19Q8TE59 1207 aa10.99□□□□□ -0.65
SYNE1-218ENST00000468937 FOXD4L5Q5VV16 416 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-218ENST00000468937 GLMNQ92990 594 aa10.98□□□□□ -0.65
SYNE1-218ENST00000468937 NFX1Q12986 1120 aaKnown RBP10.97□□□□□ -0.65
SYNE1-218ENST00000468937 SLC27A3Q5K4L6 730 aa10.97□□□□□ -0.65
SYNE1-218ENST00000468937 ESYT1Q9BSJ8 1104 aa10.97□□□□□ -0.65
SYNE1-218ENST00000468937 NOD1Q9Y239 953 aa10.97□□□□□ -0.65
SYNE1-218ENST00000468937 PTSQ03393 145 aa10.96□□□□□ -0.65
SYNE1-218ENST00000468937 CNKSR1Q969H4 720 aa10.96□□□□□ -0.65
SYNE1-218ENST00000468937 CALR3Q96L12 384 aaKnown RBP10.96□□□□□ -0.65
SYNE1-218ENST00000468937 USP17L5A8MUK1 530 aa10.95□□□□□ -0.66
SYNE1-218ENST00000468937 H3BM21 787 aa10.95□□□□□ -0.66
SYNE1-218ENST00000468937 XAGE2Q96GT9 111 aa10.95□□□□□ -0.66
SYNE1-218ENST00000468937 RAB6BQ9NRW1 208 aa10.95□□□□□ -0.66
SYNE1-218ENST00000468937 NCOA4Q13772 614 aa10.94□□□□□ -0.66
SYNE1-218ENST00000468937 PRICKLE2Q7Z3G6 844 aa10.94□□□□□ -0.66
SYNE1-218ENST00000468937 IRF7Q92985 503 aa10.94□□□□□ -0.66
SYNE1-218ENST00000468937 ATP9BO43861 1147 aa10.93□□□□□ -0.66
SYNE1-218ENST00000468937 PPFIA3O75145 1194 aa10.93□□□□□ -0.66
SYNE1-218ENST00000468937 IL2RAP01589 272 aa10.93□□□□□ -0.66
SYNE1-218ENST00000468937 GTF2E1P29083 439 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-218ENST00000468937 PLEKHM2Q8IWE5 1019 aa10.93□□□□□ -0.66
SYNE1-218ENST00000468937 GRIP2Q9C0E4 1043 aa10.93□□□□□ -0.66
SYNE1-218ENST00000468937 SLC35F4A4IF30 521 aa10.92□□□□□ -0.66
SYNE1-218ENST00000468937 VEGFBP49765 207 aa10.92□□□□□ -0.66
SYNE1-218ENST00000468937 TBC1D9Q6ZT07 1266 aa10.92□□□□□ -0.66
SYNE1-218ENST00000468937 TRIM50Q86XT4 487 aa10.92□□□□□ -0.66
SYNE1-218ENST00000468937 CCDC155Q8N6L0 562 aa10.92□□□□□ -0.66
SYNE1-218ENST00000468937 UCN2Q96RP3 112 aa10.92□□□□□ -0.66
SYNE1-218ENST00000468937 ZMYND15Q9H091 742 aa10.92□□□□□ -0.66
SYNE1-218ENST00000468937 CENPCQ03188 943 aa10.91□□□□□ -0.66
SYNE1-218ENST00000468937 ETNK1Q9HBU6 452 aa10.91□□□□□ -0.66
SYNE1-218ENST00000468937 USP17L3A6NCW0 530 aa10.9□□□□□ -0.66
SYNE1-218ENST00000468937 USP17L4A6NCW7 530 aa10.9□□□□□ -0.66
SYNE1-218ENST00000468937 WDR44Q5JSH3 913 aa10.9□□□□□ -0.66
SYNE1-218ENST00000468937 LCE2AQ5TA79 106 aaPredicted RBP10.9□□□□□ -0.66
SYNE1-218ENST00000468937 USP17L2Q6R6M4 530 aa10.9□□□□□ -0.66
SYNE1-218ENST00000468937 USP17L1Q7RTZ2 530 aa10.9□□□□□ -0.66
SYNE1-218ENST00000468937 DEPDC4Q8N2C3 294 aa10.9□□□□□ -0.66
SYNE1-218ENST00000468937 ZSCAN10Q96SZ4 725 aaPredicted RBP10.9□□□□□ -0.66
SYNE1-218ENST00000468937 SPATA31C2B4DYI2 1134 aa10.89□□□□□ -0.67
SYNE1-218ENST00000468937 WASLO00401 505 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-218ENST00000468937 INHAP05111 366 aa10.89□□□□□ -0.67
SYNE1-218ENST00000468937 ATP1A2P50993 1020 aa10.89□□□□□ -0.67
SYNE1-218ENST00000468937 GDF10P55107 478 aa10.89□□□□□ -0.67
SYNE1-218ENST00000468937 GTF2IP78347 998 aa10.89□□□□□ -0.67
SYNE1-218ENST00000468937 ZNF777Q9ULD5 760 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-218ENST00000468937 PCDHGA11Q9Y5H2 935 aa10.89□□□□□ -0.67
SYNE1-218ENST00000468937 HRH3Q9Y5N1 445 aa10.89□□□□□ -0.67
SYNE1-218ENST00000468937 PSME1Q06323 249 aa10.88□□□□□ -0.67
SYNE1-218ENST00000468937 TFIP11Q9UBB9 837 aaKnown RBP10.88□□□□□ -0.67
SYNE1-218ENST00000468937 RHOQP17081 205 aa10.87□□□□□ -0.67
SYNE1-218ENST00000468937 SCNN1DP51172 638 aa10.87□□□□□ -0.67
SYNE1-218ENST00000468937 POU4F2Q12837 409 aa10.87□□□□□ -0.67
SYNE1-218ENST00000468937 GNASQ5JWF2 1037 aa10.87□□□□□ -0.67
SYNE1-218ENST00000468937 TMEM214Q6NUQ4 689 aaKnown RBP10.87□□□□□ -0.67
SYNE1-218ENST00000468937 NBPF10Q6P3W6 841 aaKnown RBP10.87□□□□□ -0.67
SYNE1-218ENST00000468937 TAS1R3Q7RTX0 852 aa10.87□□□□□ -0.67
SYNE1-218ENST00000468937 NBPF15Q8N660 670 aa10.87□□□□□ -0.67
SYNE1-218ENST00000468937 BACH1O14867 736 aa10.86□□□□□ -0.67
SYNE1-218ENST00000468937 TLR1Q15399 786 aa10.86□□□□□ -0.67
SYNE1-218ENST00000468937 PPP1R12CQ9BZL4 782 aa10.86□□□□□ -0.67
SYNE1-218ENST00000468937 FHDC1Q9C0D6 1143 aaPredicted RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms