RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 AATKQ6ZMQ8 1374 aa12.37□□□□□ -0.43
HDAC9-220ENST00000461409 COL5A2P05997 1499 aaPredicted RBP12.37□□□□□ -0.43
HDAC9-220ENST00000461409 SBNO2Q9Y2G9 1366 aa12.36□□□□□ -0.43
HDAC9-220ENST00000461409 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.36□□□□□ -0.43
HDAC9-220ENST00000461409 ZFP91Q96JP5 570 aaPredicted RBP12.36□□□□□ -0.43
HDAC9-220ENST00000461409 SLIT3O75094 1523 aa12.36□□□□□ -0.43
HDAC9-220ENST00000461409 TTC21AQ8NDW8 1320 aa12.36□□□□□ -0.43
HDAC9-220ENST00000461409 C11orf95C9JLR9 678 aaPredicted RBP12.35□□□□□ -0.43
HDAC9-220ENST00000461409 EN1Q05925 392 aaPredicted RBP12.35□□□□□ -0.43
HDAC9-220ENST00000461409 PDCD7Q8N8D1 485 aaKnown RBP12.35□□□□□ -0.43
HDAC9-220ENST00000461409 KCNH5Q8NCM2 988 aa12.35□□□□□ -0.43
HDAC9-220ENST00000461409 CRB1P82279 1406 aa12.35□□□□□ -0.43
HDAC9-220ENST00000461409 PARD3Q8TEW0 1356 aa12.34□□□□□ -0.43
HDAC9-220ENST00000461409 TONSLQ96HA7 1378 aa12.34□□□□□ -0.43
HDAC9-220ENST00000461409 ZBTB7CA1YPR0 619 aa12.34□□□□□ -0.43
HDAC9-220ENST00000461409 TRIM37O94972 964 aa12.34□□□□□ -0.43
HDAC9-220ENST00000461409 CARD11Q9BXL7 1154 aa12.34□□□□□ -0.43
HDAC9-220ENST00000461409 PIK3C2AO00443 1686 aa12.34□□□□□ -0.43
HDAC9-220ENST00000461409 TTC21BQ7Z4L5 1316 aa12.34□□□□□ -0.43
HDAC9-220ENST00000461409 RGL2O15211 777 aa12.33□□□□□ -0.44
HDAC9-220ENST00000461409 CPSF1Q10570 1443 aaKnown RBP12.33□□□□□ -0.44
HDAC9-220ENST00000461409 TNS1Q9HBL0 1735 aaKnown RBP12.33□□□□□ -0.44
HDAC9-220ENST00000461409 KTN1Q86UP2 1357 aaKnown RBP12.32□□□□□ -0.44
HDAC9-220ENST00000461409 LRP5O75197 1615 aa12.31□□□□□ -0.44
HDAC9-220ENST00000461409 PSDA5PKW4 1024 aaPredicted RBP12.31□□□□□ -0.44
HDAC9-220ENST00000461409 APBA3O96018 575 aa12.31□□□□□ -0.44
HDAC9-220ENST00000461409 TOM1L2Q6ZVM7 507 aa12.31□□□□□ -0.44
HDAC9-220ENST00000461409 WDR17Q8IZU2 1322 aa12.31□□□□□ -0.44
HDAC9-220ENST00000461409 EZH2Q15910 746 aaKnown RBP12.3□□□□□ -0.44
HDAC9-220ENST00000461409 ARHGEF25Q86VW2 580 aa12.3□□□□□ -0.44
HDAC9-220ENST00000461409 CAMKK2Q96RR4 588 aa12.3□□□□□ -0.44
HDAC9-220ENST00000461409 CDCA7Q9BWT1 371 aaPredicted RBP12.3□□□□□ -0.44
HDAC9-220ENST00000461409 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.3□□□□□ -0.44
HDAC9-220ENST00000461409 PARP4Q9UKK3 1724 aaKnown RBP12.3□□□□□ -0.44
HDAC9-220ENST00000461409 AKAP12Q02952 1782 aa12.3□□□□□ -0.44
HDAC9-220ENST00000461409 OVOS2A0A0G2JMS6 1433 aa12.29□□□□□ -0.44
HDAC9-220ENST00000461409 OVOS2A0A0J9YW53 1432 aa12.29□□□□□ -0.44
HDAC9-220ENST00000461409 OVOS2Q6IE36 1432 aa12.29□□□□□ -0.44
HDAC9-220ENST00000461409 ABCC6O95255 1503 aa12.29□□□□□ -0.44
HDAC9-220ENST00000461409 R3HDM1Q15032 1099 aaKnown RBP12.29□□□□□ -0.44
HDAC9-220ENST00000461409 DDB1Q16531 1140 aa12.29□□□□□ -0.44
HDAC9-220ENST00000461409 HDGFL2Q7Z4V5 671 aaPredicted RBP12.29□□□□□ -0.44
HDAC9-220ENST00000461409 CDAN1Q8IWY9 1227 aa12.29□□□□□ -0.44
HDAC9-220ENST00000461409 SOX12O15370 315 aa12.28□□□□□ -0.44
HDAC9-220ENST00000461409 SLC24A1O60721 1099 aa12.28□□□□□ -0.44
HDAC9-220ENST00000461409 CSB-PGBD3P0DP91 1061 aa12.28□□□□□ -0.44
HDAC9-220ENST00000461409 EFCAB3Q8N7B9 438 aa12.28□□□□□ -0.44
HDAC9-220ENST00000461409 TMC1Q8TDI8 760 aa12.28□□□□□ -0.44
HDAC9-220ENST00000461409 TAOK2Q9UL54 1235 aa12.28□□□□□ -0.44
HDAC9-220ENST00000461409 AXIN2Q9Y2T1 843 aa12.28□□□□□ -0.44
HDAC9-220ENST00000461409 NFAT5O94916 1531 aa12.27□□□□□ -0.44
HDAC9-220ENST00000461409 PUS7Q96PZ0 661 aaKnown RBP12.27□□□□□ -0.45
HDAC9-220ENST00000461409 CARD10Q9BWT7 1032 aa12.27□□□□□ -0.45
HDAC9-220ENST00000461409 TERF2IPQ9NYB0 399 aa12.27□□□□□ -0.45
HDAC9-220ENST00000461409 COL18A1P39060 1754 aa12.27□□□□□ -0.45
HDAC9-220ENST00000461409 USP31Q70CQ4 1352 aa12.27□□□□□ -0.45
HDAC9-220ENST00000461409 MON2Q7Z3U7 1717 aa12.26□□□□□ -0.45
HDAC9-220ENST00000461409 NBPF14Q5TI25 921 aa12.26□□□□□ -0.45
HDAC9-220ENST00000461409 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.26□□□□□ -0.45
HDAC9-220ENST00000461409 EDC4Q6P2E9 1401 aaKnown RBP12.26□□□□□ -0.45
HDAC9-220ENST00000461409 LRRC37A3O60309 1634 aa12.26□□□□□ -0.45
HDAC9-220ENST00000461409 ST18O60284 1047 aa12.25□□□□□ -0.45
HDAC9-220ENST00000461409 TRIM26Q12899 539 aaPredicted RBP12.25□□□□□ -0.45
HDAC9-220ENST00000461409 CCDC7Q96M83 1385 aa12.25□□□□□ -0.45
HDAC9-220ENST00000461409 NINLQ9Y2I6 1382 aa12.25□□□□□ -0.45
HDAC9-220ENST00000461409 CD163L1Q9NR16 1453 aa12.25□□□□□ -0.45
HDAC9-220ENST00000461409 BCL9O00512 1426 aa12.24□□□□□ -0.45
HDAC9-220ENST00000461409 NME9Q86XW9 330 aa12.24□□□□□ -0.45
HDAC9-220ENST00000461409 BCL11BQ9C0K0 894 aaPredicted RBP12.24□□□□□ -0.45
HDAC9-220ENST00000461409 SLC12A5Q9H2X9 1139 aa12.24□□□□□ -0.45
HDAC9-220ENST00000461409 PEAK1Q9H792 1746 aa12.23□□□□□ -0.45
HDAC9-220ENST00000461409 USP54Q70EL1 1684 aa12.22□□□□□ -0.45
HDAC9-220ENST00000461409 RREB1Q92766 1687 aa12.22□□□□□ -0.45
HDAC9-220ENST00000461409 A0A1W2PP64 1363 aa12.22□□□□□ -0.45
HDAC9-220ENST00000461409 ERBB3P21860 1342 aa12.22□□□□□ -0.45
HDAC9-220ENST00000461409 EXOC5O00471 708 aa12.22□□□□□ -0.45
HDAC9-220ENST00000461409 PLSCR1O15162 318 aa12.22□□□□□ -0.45
HDAC9-220ENST00000461409 MARCH10Q8NA82 808 aaPredicted RBP12.22□□□□□ -0.45
HDAC9-220ENST00000461409 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.22□□□□□ -0.45
HDAC9-220ENST00000461409 WNK3Q9BYP7 1800 aa12.21□□□□□ -0.45
HDAC9-220ENST00000461409 NUP188Q5SRE5 1749 aa12.21□□□□□ -0.45
HDAC9-220ENST00000461409 ST20-MTHFSA0A0A6YYL1 179 aa12.21□□□□□ -0.45
HDAC9-220ENST00000461409 DPY19L2Q6NUT2 758 aa12.21□□□□□ -0.45
HDAC9-220ENST00000461409 TESK2Q96S53 571 aa12.21□□□□□ -0.45
HDAC9-220ENST00000461409 TNS2Q63HR2 1409 aa12.2□□□□□ -0.46
HDAC9-220ENST00000461409 RGPD3A6NKT7 1758 aaPredicted RBP12.2□□□□□ -0.46
HDAC9-220ENST00000461409 RGPD4Q7Z3J3 1758 aa12.2□□□□□ -0.46
HDAC9-220ENST00000461409 SNPHO15079 494 aa12.2□□□□□ -0.46
HDAC9-220ENST00000461409 NLRP2Q9NX02 1062 aa12.2□□□□□ -0.46
HDAC9-220ENST00000461409 STK25O00506 426 aa12.19□□□□□ -0.46
HDAC9-220ENST00000461409 ANKRD24Q8TF21 1146 aa12.19□□□□□ -0.46
HDAC9-220ENST00000461409 STK24Q9Y6E0 443 aa12.19□□□□□ -0.46
HDAC9-220ENST00000461409 RGPD5Q99666 1765 aa12.19□□□□□ -0.46
HDAC9-220ENST00000461409 IL2RBP14784 551 aa12.18□□□□□ -0.46
HDAC9-220ENST00000461409 COG3Q96JB2 828 aa12.18□□□□□ -0.46
HDAC9-220ENST00000461409 L3MBTL3Q96JM7 780 aaPredicted RBP12.18□□□□□ -0.46
HDAC9-220ENST00000461409 SBF2Q86WG5 1849 aa12.17□□□□□ -0.46
HDAC9-220ENST00000461409 TMF1P82094 1093 aa12.17□□□□□ -0.46
HDAC9-220ENST00000461409 ANKRD36BQ8N2N9 1353 aa12.17□□□□□ -0.46
HDAC9-220ENST00000461409 USP47Q96K76 1375 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms