RNA–Protein interactions for RNA: ENST00000460176.6

GARNL3-211, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 5

Gene GARNL3, Length 569 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-211ENST00000460176 SHANK3Q9BYB0 1731 aa13.72□□□□□ -0.21
GARNL3-211ENST00000460176 MEGF6O75095 1541 aa13.71□□□□□ -0.21
GARNL3-211ENST00000460176 U2SURPO15042 1029 aaKnown RBP13.71□□□□□ -0.21
GARNL3-211ENST00000460176 POTEAQ6S8J7 498 aa13.71□□□□□ -0.21
GARNL3-211ENST00000460176 USP35Q9P2H5 1018 aa13.71□□□□□ -0.21
GARNL3-211ENST00000460176 NUDCQ9Y266 331 aa13.71□□□□□ -0.21
GARNL3-211ENST00000460176 SULT6B1Q6IMI4 303 aa13.7□□□□□ -0.22
GARNL3-211ENST00000460176 AEBP1Q8IUX7 1158 aa13.7□□□□□ -0.22
GARNL3-211ENST00000460176 TCP11L2Q8N4U5 519 aa13.7□□□□□ -0.22
GARNL3-211ENST00000460176 THRAP3Q9Y2W1 955 aaKnown RBP13.7□□□□□ -0.22
GARNL3-211ENST00000460176 BRWD3Q6RI45 1802 aa13.69□□□□□ -0.22
GARNL3-211ENST00000460176 U2AF1L5P0DN76 240 aaPredicted RBP13.69□□□□□ -0.22
GARNL3-211ENST00000460176 U2AF1Q01081 240 aaKnown RBP eCLIP13.69□□□□□ -0.22
GARNL3-211ENST00000460176 BARGINQ6ZT62 677 aa13.69□□□□□ -0.22
GARNL3-211ENST00000460176 OVOS2A0A0G2JMS6 1433 aa13.68□□□□□ -0.22
GARNL3-211ENST00000460176 HMOX1P09601 288 aa13.68□□□□□ -0.22
GARNL3-211ENST00000460176 RBM6P78332 1123 aaKnown RBP13.68□□□□□ -0.22
GARNL3-211ENST00000460176 FAM98CQ17RN3 349 aaKnown RBP13.68□□□□□ -0.22
GARNL3-211ENST00000460176 PNISRQ8TF01 805 aaKnown RBP13.68□□□□□ -0.22
GARNL3-211ENST00000460176 ATF5Q9Y2D1 282 aaPredicted RBP13.68□□□□□ -0.22
GARNL3-211ENST00000460176 ONECUT3O60422 494 aaPredicted RBP13.67□□□□□ -0.22
GARNL3-211ENST00000460176 WDR43Q15061 677 aaKnown RBP eCLIP13.67□□□□□ -0.22
GARNL3-211ENST00000460176 RSPH6AQ9H0K4 717 aa13.67□□□□□ -0.22
GARNL3-211ENST00000460176 PLEKHG2Q9H7P9 1386 aa13.67□□□□□ -0.22
GARNL3-211ENST00000460176 IL2RBP14784 551 aa13.66□□□□□ -0.22
GARNL3-211ENST00000460176 RXRBP28702 533 aa13.66□□□□□ -0.22
GARNL3-211ENST00000460176 RGS12O14924 1447 aa13.65□□□□□ -0.22
GARNL3-211ENST00000460176 TNS2Q63HR2 1409 aa13.65□□□□□ -0.22
GARNL3-211ENST00000460176 FCHSD2O94868 740 aa13.65□□□□□ -0.22
GARNL3-211ENST00000460176 CACNB1Q02641 598 aaPredicted RBP13.65□□□□□ -0.22
GARNL3-211ENST00000460176 RAPGEF4Q8WZA2 1011 aa13.65□□□□□ -0.22
GARNL3-211ENST00000460176 CDCA7Q9BWT1 371 aaPredicted RBP13.65□□□□□ -0.22
GARNL3-211ENST00000460176 ADAMTS8Q9UP79 889 aa13.65□□□□□ -0.22
GARNL3-211ENST00000460176 TATP17735 454 aaPredicted RBP13.64□□□□□ -0.23
GARNL3-211ENST00000460176 PRKAR2BP31323 418 aa13.64□□□□□ -0.23
GARNL3-211ENST00000460176 DLG5Q8TDM6 1919 aa13.64□□□□□ -0.23
GARNL3-211ENST00000460176 VIRMAQ69YN4 1812 aaKnown RBP13.63□□□□□ -0.23
GARNL3-211ENST00000460176 PLEKHF1Q96S99 279 aa13.63□□□□□ -0.23
GARNL3-211ENST00000460176 ZNF219Q9P2Y4 722 aaPredicted RBP13.63□□□□□ -0.23
GARNL3-211ENST00000460176 SEPT12Q8IYM1 358 aa13.62□□□□□ -0.23
GARNL3-211ENST00000460176 DDB1Q16531 1140 aa13.61□□□□□ -0.23
GARNL3-211ENST00000460176 FAM9BQ8IZU0 186 aa13.61□□□□□ -0.23
GARNL3-211ENST00000460176 ZCRB1Q8TBF4 217 aaKnown RBP13.61□□□□□ -0.23
GARNL3-211ENST00000460176 PHACTR3Q96KR7 559 aa13.61□□□□□ -0.23
GARNL3-211ENST00000460176 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.61□□□□□ -0.23
GARNL3-211ENST00000460176 ADAMTS7Q9UKP4 1686 aa13.6□□□□□ -0.23
GARNL3-211ENST00000460176 A0A0G2JS52 829 aa13.6□□□□□ -0.23
GARNL3-211ENST00000460176 MYT1Q01538 1121 aa13.6□□□□□ -0.23
GARNL3-211ENST00000460176 AMOTQ4VCS5 1084 aa13.6□□□□□ -0.23
GARNL3-211ENST00000460176 CCDC146Q8IYE0 955 aa13.6□□□□□ -0.23
GARNL3-211ENST00000460176 PNNQ9H307 717 aaKnown RBP13.6□□□□□ -0.23
GARNL3-211ENST00000460176 TOGARAM1Q9Y4F4 1720 aa13.6□□□□□ -0.23
GARNL3-211ENST00000460176 DOT1LQ8TEK3 1739 aa13.59□□□□□ -0.23
GARNL3-211ENST00000460176 SCN11AQ9UI33 1791 aa13.59□□□□□ -0.23
GARNL3-211ENST00000460176 EXOC5O00471 708 aa13.59□□□□□ -0.23
GARNL3-211ENST00000460176 MTHFSDQ2M296 383 aaKnown RBP13.59□□□□□ -0.23
GARNL3-211ENST00000460176 PLEKHO1Q53GL0 409 aaPredicted RBP13.59□□□□□ -0.23
GARNL3-211ENST00000460176 RUNDC1Q96C34 613 aa13.59□□□□□ -0.23
GARNL3-211ENST00000460176 SPG7Q9UQ90 795 aa13.59□□□□□ -0.23
GARNL3-211ENST00000460176 PCDH11XQ9BZA7 1347 aa13.59□□□□□ -0.23
GARNL3-211ENST00000460176 PCDH11YQ9BZA8 1340 aa13.59□□□□□ -0.23
GARNL3-211ENST00000460176 SBF2Q86WG5 1849 aa13.58□□□□□ -0.24
GARNL3-211ENST00000460176 MAPK8IP3Q9UPT6 1336 aa13.58□□□□□ -0.24
GARNL3-211ENST00000460176 CYP27B1O15528 508 aa13.57□□□□□ -0.24
GARNL3-211ENST00000460176 MARCH10Q8NA82 808 aaPredicted RBP13.57□□□□□ -0.24
GARNL3-211ENST00000460176 PHKG2P15735 406 aa13.56□□□□□ -0.24
GARNL3-211ENST00000460176 PDE3BQ13370 1112 aa13.56□□□□□ -0.24
GARNL3-211ENST00000460176 ZNF530Q6P9A1 599 aaPredicted RBP13.56□□□□□ -0.24
GARNL3-211ENST00000460176 GAS2L2Q8NHY3 880 aa13.56□□□□□ -0.24
GARNL3-211ENST00000460176 DDX54Q8TDD1 881 aaKnown RBP13.56□□□□□ -0.24
GARNL3-211ENST00000460176 ITGB4P16144 1822 aa13.55□□□□□ -0.24
GARNL3-211ENST00000460176 NEFMP07197 916 aa13.55□□□□□ -0.24
GARNL3-211ENST00000460176 NFE2L2Q16236 605 aa13.55□□□□□ -0.24
GARNL3-211ENST00000460176 KRT27Q7Z3Y8 459 aa13.55□□□□□ -0.24
GARNL3-211ENST00000460176 IFNL2Q8IZJ0 200 aa13.55□□□□□ -0.24
GARNL3-211ENST00000460176 NHSQ6T4R5 1651 aa13.55□□□□□ -0.24
GARNL3-211ENST00000460176 MAP3K5Q99683 1374 aa13.55□□□□□ -0.24
GARNL3-211ENST00000460176 SIPA1L3O60292 1781 aaPredicted RBP13.55□□□□□ -0.24
GARNL3-211ENST00000460176 BCL9O00512 1426 aa13.55□□□□□ -0.24
GARNL3-211ENST00000460176 KDM6AO15550 1401 aaPredicted RBP13.55□□□□□ -0.24
GARNL3-211ENST00000460176 APAF1O14727 1248 aa13.54□□□□□ -0.24
GARNL3-211ENST00000460176 TMPOP42166 694 aaKnown RBP13.54□□□□□ -0.24
GARNL3-211ENST00000460176 NKX1-1Q15270 411 aaPredicted RBP13.54□□□□□ -0.24
GARNL3-211ENST00000460176 AKAP4Q5JQC9 854 aa13.54□□□□□ -0.24
GARNL3-211ENST00000460176 FBXO3Q9UK99 471 aa13.54□□□□□ -0.24
GARNL3-211ENST00000460176 C1orf141Q5JVX7 400 aa13.53□□□□□ -0.24
GARNL3-211ENST00000460176 FAM182BQ5T319 152 aa13.53□□□□□ -0.24
GARNL3-211ENST00000460176 GNAT3A8MTJ3 354 aa13.52□□□□□ -0.25
GARNL3-211ENST00000460176 RRP7AQ9Y3A4 280 aaKnown RBP13.52□□□□□ -0.25
GARNL3-211ENST00000460176 MRC1P22897 1456 aa13.52□□□□□ -0.25
GARNL3-211ENST00000460176 TNS1Q9HBL0 1735 aaKnown RBP13.51□□□□□ -0.25
GARNL3-211ENST00000460176 MPRIPQ6WCQ1 1025 aa13.51□□□□□ -0.25
GARNL3-211ENST00000460176 CEMIPQ8WUJ3 1361 aa13.5□□□□□ -0.25
GARNL3-211ENST00000460176 SENP3-EIF4A1A0A087X0R7 540 aa13.5□□□□□ -0.25
GARNL3-211ENST00000460176 HTATSF1O43719 755 aaKnown RBP13.5□□□□□ -0.25
GARNL3-211ENST00000460176 HSP90AB1P08238 724 aaKnown RBP13.5□□□□□ -0.25
GARNL3-211ENST00000460176 RIPK4P57078 832 aa13.5□□□□□ -0.25
GARNL3-211ENST00000460176 DCAF5Q96JK2 942 aa13.5□□□□□ -0.25
GARNL3-211ENST00000460176 TRIM35Q9UPQ4 493 aa13.5□□□□□ -0.25
GARNL3-211ENST00000460176 BTAF1O14981 1849 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms