RNA–Protein interactions for RNA: ENST00000458516.5

TRIM39-211, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-211ENST00000458516 ADAMTS8Q9UP79 889 aa22.45■■□□□ 1.18
TRIM39-211ENST00000458516 RAPGEF4Q8WZA2 1011 aa22.44■■□□□ 1.18
TRIM39-211ENST00000458516 PLEKHG2Q9H7P9 1386 aa22.43■■□□□ 1.18
TRIM39-211ENST00000458516 FCHSD2O94868 740 aa22.43■■□□□ 1.18
TRIM39-211ENST00000458516 ONECUT3O60422 494 aaPredicted RBP22.42■■□□□ 1.18
TRIM39-211ENST00000458516 TATP17735 454 aaPredicted RBP22.42■■□□□ 1.18
TRIM39-211ENST00000458516 PRKAR2BP31323 418 aa22.42■■□□□ 1.18
TRIM39-211ENST00000458516 CDCA7Q9BWT1 371 aaPredicted RBP22.42■■□□□ 1.18
TRIM39-211ENST00000458516 TNS2Q63HR2 1409 aa22.41■■□□□ 1.18
TRIM39-211ENST00000458516 RXRBP28702 533 aa22.41■■□□□ 1.18
TRIM39-211ENST00000458516 DLG5Q8TDM6 1919 aa22.41■■□□□ 1.18
TRIM39-211ENST00000458516 FAM9BQ8IZU0 186 aa22.4■■□□□ 1.18
TRIM39-211ENST00000458516 PLEKHF1Q96S99 279 aa22.4■■□□□ 1.18
TRIM39-211ENST00000458516 RGS12O14924 1447 aa22.4■■□□□ 1.18
TRIM39-211ENST00000458516 VIRMAQ69YN4 1812 aaKnown RBP22.39■■□□□ 1.17
TRIM39-211ENST00000458516 CCDC146Q8IYE0 955 aa22.37■■□□□ 1.17
TRIM39-211ENST00000458516 SEPT12Q8IYM1 358 aa22.37■■□□□ 1.17
TRIM39-211ENST00000458516 PHACTR3Q96KR7 559 aa22.37■■□□□ 1.17
TRIM39-211ENST00000458516 PNNQ9H307 717 aaKnown RBP22.36■■□□□ 1.17
TRIM39-211ENST00000458516 A0A0G2JS52 829 aa22.35■■□□□ 1.17
TRIM39-211ENST00000458516 MYT1Q01538 1121 aa22.35■■□□□ 1.17
TRIM39-211ENST00000458516 ZCRB1Q8TBF4 217 aaKnown RBP22.35■■□□□ 1.17
TRIM39-211ENST00000458516 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.35■■□□□ 1.17
TRIM39-211ENST00000458516 DDB1Q16531 1140 aa22.34■■□□□ 1.17
TRIM39-211ENST00000458516 PLEKHO1Q53GL0 409 aaPredicted RBP22.34■■□□□ 1.17
TRIM39-211ENST00000458516 RUNDC1Q96C34 613 aa22.34■■□□□ 1.17
TRIM39-211ENST00000458516 EXOC5O00471 708 aa22.33■■□□□ 1.17
TRIM39-211ENST00000458516 MTHFSDQ2M296 383 aaKnown RBP22.33■■□□□ 1.17
TRIM39-211ENST00000458516 AMOTQ4VCS5 1084 aa22.33■■□□□ 1.17
TRIM39-211ENST00000458516 SPG7Q9UQ90 795 aa22.33■■□□□ 1.17
TRIM39-211ENST00000458516 MAPK8IP3Q9UPT6 1336 aa22.32■■□□□ 1.16
TRIM39-211ENST00000458516 PCDH11XQ9BZA7 1347 aa22.31■■□□□ 1.16
TRIM39-211ENST00000458516 PCDH11YQ9BZA8 1340 aa22.31■■□□□ 1.16
TRIM39-211ENST00000458516 SCN11AQ9UI33 1791 aa22.3■■□□□ 1.16
TRIM39-211ENST00000458516 ADAMTS7Q9UKP4 1686 aa22.3■■□□□ 1.16
TRIM39-211ENST00000458516 CYP27B1O15528 508 aa22.3■■□□□ 1.16
TRIM39-211ENST00000458516 NEFMP07197 916 aa22.3■■□□□ 1.16
TRIM39-211ENST00000458516 ZNF530Q6P9A1 599 aaPredicted RBP22.3■■□□□ 1.16
TRIM39-211ENST00000458516 GAS2L2Q8NHY3 880 aa22.3■■□□□ 1.16
TRIM39-211ENST00000458516 TOGARAM1Q9Y4F4 1720 aa22.3■■□□□ 1.16
TRIM39-211ENST00000458516 DOT1LQ8TEK3 1739 aa22.28■■□□□ 1.16
TRIM39-211ENST00000458516 MARCH10Q8NA82 808 aaPredicted RBP22.28■■□□□ 1.16
TRIM39-211ENST00000458516 SBF2Q86WG5 1849 aa22.28■■□□□ 1.16
TRIM39-211ENST00000458516 PHKG2P15735 406 aa22.27■■□□□ 1.16
TRIM39-211ENST00000458516 NFE2L2Q16236 605 aa22.27■■□□□ 1.16
TRIM39-211ENST00000458516 DDX54Q8TDD1 881 aaKnown RBP22.27■■□□□ 1.16
TRIM39-211ENST00000458516 APAF1O14727 1248 aa22.26■■□□□ 1.15
TRIM39-211ENST00000458516 PDE3BQ13370 1112 aa22.26■■□□□ 1.15
TRIM39-211ENST00000458516 AKAP4Q5JQC9 854 aa22.26■■□□□ 1.15
TRIM39-211ENST00000458516 IFNL2Q8IZJ0 200 aa22.26■■□□□ 1.15
TRIM39-211ENST00000458516 MAP3K5Q99683 1374 aa22.25■■□□□ 1.15
TRIM39-211ENST00000458516 ITGB4P16144 1822 aa22.25■■□□□ 1.15
TRIM39-211ENST00000458516 TMPOP42166 694 aaKnown RBP22.25■■□□□ 1.15
TRIM39-211ENST00000458516 C1orf141Q5JVX7 400 aa22.25■■□□□ 1.15
TRIM39-211ENST00000458516 KRT27Q7Z3Y8 459 aa22.25■■□□□ 1.15
TRIM39-211ENST00000458516 KAT6BQ8WYB5 2073 aa22.25■■□□□ 1.15
TRIM39-211ENST00000458516 KDM6AO15550 1401 aaPredicted RBP22.24■■□□□ 1.15
TRIM39-211ENST00000458516 RRP7AQ9Y3A4 280 aaKnown RBP22.24■■□□□ 1.15
TRIM39-211ENST00000458516 NKX1-1Q15270 411 aaPredicted RBP22.23■■□□□ 1.15
TRIM39-211ENST00000458516 BCL9O00512 1426 aa22.23■■□□□ 1.15
TRIM39-211ENST00000458516 SIPA1L3O60292 1781 aaPredicted RBP22.22■■□□□ 1.15
TRIM39-211ENST00000458516 NHSQ6T4R5 1651 aa22.21■■□□□ 1.15
TRIM39-211ENST00000458516 SENP3-EIF4A1A0A087X0R7 540 aa22.21■■□□□ 1.15
TRIM39-211ENST00000458516 GNAT3A8MTJ3 354 aa22.21■■□□□ 1.15
TRIM39-211ENST00000458516 RIPK4P57078 832 aa22.21■■□□□ 1.15
TRIM39-211ENST00000458516 FAM182BQ5T319 152 aa22.21■■□□□ 1.15
TRIM39-211ENST00000458516 HSP90AB1P08238 724 aaKnown RBP22.2■■□□□ 1.14
TRIM39-211ENST00000458516 MRC1P22897 1456 aa22.2■■□□□ 1.14
TRIM39-211ENST00000458516 NEUROD2Q15784 382 aa22.19■■□□□ 1.14
TRIM39-211ENST00000458516 MPRIPQ6WCQ1 1025 aa22.19■■□□□ 1.14
TRIM39-211ENST00000458516 CEMIPQ8WUJ3 1361 aa22.18■■□□□ 1.14
TRIM39-211ENST00000458516 HTATSF1O43719 755 aaKnown RBP22.18■■□□□ 1.14
TRIM39-211ENST00000458516 DCAF5Q96JK2 942 aa22.18■■□□□ 1.14
TRIM39-211ENST00000458516 TRIM35Q9UPQ4 493 aa22.18■■□□□ 1.14
TRIM39-211ENST00000458516 RNMTO43148 476 aaKnown RBP22.17■■□□□ 1.14
TRIM39-211ENST00000458516 LGR6Q9HBX8 967 aa22.17■■□□□ 1.14
TRIM39-211ENST00000458516 DCTN1Q14203 1278 aa22.16■■□□□ 1.14
TRIM39-211ENST00000458516 NCBP3Q53F19 620 aaKnown RBP22.16■■□□□ 1.14
TRIM39-211ENST00000458516 MCM10Q7L590 875 aa22.16■■□□□ 1.14
TRIM39-211ENST00000458516 IL17REQ8NFR9 667 aa22.16■■□□□ 1.14
TRIM39-211ENST00000458516 LMOD3Q0VAK6 560 aa22.15■■□□□ 1.14
TRIM39-211ENST00000458516 RTF1Q92541 710 aaKnown RBP22.15■■□□□ 1.14
TRIM39-211ENST00000458516 BTAF1O14981 1849 aa22.15■■□□□ 1.14
TRIM39-211ENST00000458516 CCDC27Q2M243 656 aa22.14■■□□□ 1.13
TRIM39-211ENST00000458516 FAM196AQ6ZSG2 479 aa22.14■■□□□ 1.13
TRIM39-211ENST00000458516 TNS1Q9HBL0 1735 aaKnown RBP22.14■■□□□ 1.13
TRIM39-211ENST00000458516 ACSBG1Q96GR2 724 aa22.13■■□□□ 1.13
TRIM39-211ENST00000458516 THUMPD2Q9BTF0 503 aaKnown RBP22.13■■□□□ 1.13
TRIM39-211ENST00000458516 PAPPAQ13219 1627 aa22.13■■□□□ 1.13
TRIM39-211ENST00000458516 NGEFQ8N5V2 710 aa22.12■■□□□ 1.13
TRIM39-211ENST00000458516 SALL2Q9Y467 1007 aaPredicted RBP22.12■■□□□ 1.13
TRIM39-211ENST00000458516 ERVV-2B6SEH9 535 aa22.11■■□□□ 1.13
TRIM39-211ENST00000458516 KDM3BQ7LBC6 1761 aa22.1■■□□□ 1.13
TRIM39-211ENST00000458516 HNRNPUQ00839 825 aaKnown RBP eCLIP22.1■■□□□ 1.13
TRIM39-211ENST00000458516 WWC1Q8IX03 1113 aa22.1■■□□□ 1.13
TRIM39-211ENST00000458516 SLC52A2Q9HAB3 445 aa22.1■■□□□ 1.13
TRIM39-211ENST00000458516 ZNF521Q96K83 1311 aa22.09■■□□□ 1.13
TRIM39-211ENST00000458516 KCNQ2O43526 872 aa22.09■■□□□ 1.13
TRIM39-211ENST00000458516 PRIM1P49642 420 aaKnown RBP22.09■■□□□ 1.13
TRIM39-211ENST00000458516 EP400Q96L91 3159 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms