RNA–Protein interactions for RNA: ENST00000458277.1

HMGB4-202, Transcript of high mobility group box 4, humanhuman

TSL 3

Gene HMGB4, Length 437 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-202ENST00000458277 TRMT44Q8IYL2 757 aaKnown RBP7.53□□□□□ -1.2
HMGB4-202ENST00000458277 CARD14Q9BXL6 1004 aa7.53□□□□□ -1.2
HMGB4-202ENST00000458277 ZNF395Q9H8N7 513 aaPredicted RBP7.53□□□□□ -1.2
HMGB4-202ENST00000458277 WASHC2AQ641Q2 1341 aa7.52□□□□□ -1.2
HMGB4-202ENST00000458277 PER1O15534 1290 aaPredicted RBP7.52□□□□□ -1.21
HMGB4-202ENST00000458277 BRD2P25440 801 aaKnown RBP7.52□□□□□ -1.21
HMGB4-202ENST00000458277 ANP32AP39687 249 aaKnown RBP7.52□□□□□ -1.21
HMGB4-202ENST00000458277 HSP90AA2PQ14568 343 aaPredicted RBP7.52□□□□□ -1.21
HMGB4-202ENST00000458277 IL27Q8NEV9 243 aa7.51□□□□□ -1.21
HMGB4-202ENST00000458277 ACDQ96AP0 544 aa7.51□□□□□ -1.21
HMGB4-202ENST00000458277 ARMC2Q8NEN0 867 aa7.5□□□□□ -1.21
HMGB4-202ENST00000458277 TSC1Q92574 1164 aa7.5□□□□□ -1.21
HMGB4-202ENST00000458277 PCDHB15Q9Y5E8 787 aa7.5□□□□□ -1.21
HMGB4-202ENST00000458277 CENPJQ9HC77 1338 aaPredicted RBP7.5□□□□□ -1.21
HMGB4-202ENST00000458277 HSP90AA1P07900 732 aaKnown RBP7.49□□□□□ -1.21
HMGB4-202ENST00000458277 SNRPNP63162 240 aaKnown RBP7.49□□□□□ -1.21
HMGB4-202ENST00000458277 NBPF14Q5TI25 921 aa7.49□□□□□ -1.21
HMGB4-202ENST00000458277 SH3BP5LQ7L8J4 393 aa7.49□□□□□ -1.21
HMGB4-202ENST00000458277 FOXR1Q6PIV2 292 aa7.48□□□□□ -1.21
HMGB4-202ENST00000458277 ZNF837Q96EG3 531 aaPredicted RBP7.48□□□□□ -1.21
HMGB4-202ENST00000458277 KRTAP4-12Q9BQ66 201 aa7.48□□□□□ -1.21
HMGB4-202ENST00000458277 CALD1Q05682 793 aaKnown RBP7.47□□□□□ -1.21
HMGB4-202ENST00000458277 ERFEQ4G0M1 354 aa7.47□□□□□ -1.21
HMGB4-202ENST00000458277 RSBN1LQ6PCB5 846 aaPredicted RBP7.47□□□□□ -1.21
HMGB4-202ENST00000458277 NAP1L5Q96NT1 182 aaPredicted RBP7.47□□□□□ -1.21
HMGB4-202ENST00000458277 IPO9Q96P70 1041 aaKnown RBP7.47□□□□□ -1.21
HMGB4-202ENST00000458277 ZBTB3Q9H5J0 574 aa7.47□□□□□ -1.21
HMGB4-202ENST00000458277 FOXD4L5Q5VV16 416 aaPredicted RBP7.46□□□□□ -1.22
HMGB4-202ENST00000458277 COL8A1P27658 744 aa7.45□□□□□ -1.22
HMGB4-202ENST00000458277 PRPF38BQ5VTL8 546 aaKnown RBP7.45□□□□□ -1.22
HMGB4-202ENST00000458277 RIPOR1Q6ZS17 1223 aa7.45□□□□□ -1.22
HMGB4-202ENST00000458277 CABLES1Q8TDN4 633 aa7.45□□□□□ -1.22
HMGB4-202ENST00000458277 KCTD15Q96SI1 283 aaPredicted RBP7.45□□□□□ -1.22
HMGB4-202ENST00000458277 BCCIPQ9P287 314 aaKnown RBP eCLIP7.45□□□□□ -1.22
HMGB4-202ENST00000458277 A0A0U1RQG5 324 aaPredicted RBP7.44□□□□□ -1.22
HMGB4-202ENST00000458277 NEFMP07197 916 aa7.44□□□□□ -1.22
HMGB4-202ENST00000458277 RHOQP17081 205 aa7.44□□□□□ -1.22
HMGB4-202ENST00000458277 DHX9Q08211 1270 aaKnown RBP7.44□□□□□ -1.22
HMGB4-202ENST00000458277 CNGB1Q14028 1251 aaPredicted RBP7.44□□□□□ -1.22
HMGB4-202ENST00000458277 CSPP1Q1MSJ5 1256 aa7.44□□□□□ -1.22
HMGB4-202ENST00000458277 LYSMD3Q7Z3D4 306 aa7.44□□□□□ -1.22
HMGB4-202ENST00000458277 PRICKLE2Q7Z3G6 844 aa7.44□□□□□ -1.22
HMGB4-202ENST00000458277 TRIM22Q8IYM9 498 aa7.44□□□□□ -1.22
HMGB4-202ENST00000458277 TBC1D2Q9BYX2 928 aa7.44□□□□□ -1.22
HMGB4-202ENST00000458277 RTN4Q9NQC3 1192 aaKnown RBP7.44□□□□□ -1.22
HMGB4-202ENST00000458277 MKL2Q9ULH7 1088 aa7.44□□□□□ -1.22
HMGB4-202ENST00000458277 OIP5O43482 229 aa7.43□□□□□ -1.22
HMGB4-202ENST00000458277 ITGB7P26010 798 aa7.43□□□□□ -1.22
HMGB4-202ENST00000458277 GJA5P36382 358 aa7.43□□□□□ -1.22
HMGB4-202ENST00000458277 TTLL12Q14166 644 aaPredicted RBP7.43□□□□□ -1.22
HMGB4-202ENST00000458277 DBN1Q16643 649 aa7.43□□□□□ -1.22
HMGB4-202ENST00000458277 ZMYM1Q5SVZ6 1142 aa7.43□□□□□ -1.22
HMGB4-202ENST00000458277 GTPBP3Q969Y2 492 aaKnown RBP7.43□□□□□ -1.22
HMGB4-202ENST00000458277 BEGAINQ9BUH8 593 aa7.43□□□□□ -1.22
HMGB4-202ENST00000458277 ARID4BQ4LE39 1312 aaPredicted RBP7.43□□□□□ -1.22
HMGB4-202ENST00000458277 EIF4G1Q04637 1599 aaKnown RBP7.42□□□□□ -1.22
HMGB4-202ENST00000458277 BTBD11A6QL63 1104 aa7.42□□□□□ -1.22
HMGB4-202ENST00000458277 GRIN2CQ14957 1233 aa7.42□□□□□ -1.22
HMGB4-202ENST00000458277 IPO4Q8TEX9 1081 aaKnown RBP7.42□□□□□ -1.22
HMGB4-202ENST00000458277 ANP32BQ92688 251 aaKnown RBP7.42□□□□□ -1.22
HMGB4-202ENST00000458277 BCANQ96GW7 911 aa7.42□□□□□ -1.22
HMGB4-202ENST00000458277 MAP7D2Q96T17 732 aa7.42□□□□□ -1.22
HMGB4-202ENST00000458277 KRTAP9-9Q9BYP9 154 aa7.42□□□□□ -1.22
HMGB4-202ENST00000458277 KRTAP9-4Q9BYQ2 154 aa7.42□□□□□ -1.22
HMGB4-202ENST00000458277 SEMA6BQ9H3T3 888 aa7.42□□□□□ -1.22
HMGB4-202ENST00000458277 RRAGCQ9HB90 399 aa7.42□□□□□ -1.22
HMGB4-202ENST00000458277 LRRC4BQ9NT99 713 aa7.42□□□□□ -1.22
HMGB4-202ENST00000458277 PPP4R2Q9NY27 417 aa7.42□□□□□ -1.22
HMGB4-202ENST00000458277 TIMELESSQ9UNS1 1208 aa7.42□□□□□ -1.22
HMGB4-202ENST00000458277 CECR2Q9BXF3 1484 aa7.42□□□□□ -1.22
HMGB4-202ENST00000458277 HSP90B1P14625 803 aaKnown RBP7.41□□□□□ -1.22
HMGB4-202ENST00000458277 MX2P20592 715 aa7.41□□□□□ -1.22
HMGB4-202ENST00000458277 AMER1Q5JTC6 1135 aaPredicted RBP7.41□□□□□ -1.22
HMGB4-202ENST00000458277 ALYREFQ86V81 257 aaKnown RBP7.41□□□□□ -1.22
HMGB4-202ENST00000458277 SLC10A4Q96EP9 437 aa7.41□□□□□ -1.22
HMGB4-202ENST00000458277 GMCL1Q96IK5 515 aa7.41□□□□□ -1.22
HMGB4-202ENST00000458277 TRERF1Q96PN7 1200 aa7.41□□□□□ -1.22
HMGB4-202ENST00000458277 PDCL3Q9H2J4 239 aa7.41□□□□□ -1.22
HMGB4-202ENST00000458277 C1QTNF9BB2RNN3 333 aa7.4□□□□□ -1.22
HMGB4-202ENST00000458277 CCER2I3L3R5 266 aa7.4□□□□□ -1.22
HMGB4-202ENST00000458277 INTS6LQ5JSJ4 861 aaKnown RBP7.4□□□□□ -1.22
HMGB4-202ENST00000458277 TMPRSS4Q9NRS4 437 aa7.4□□□□□ -1.22
HMGB4-202ENST00000458277 NSFL1CQ9UNZ2 370 aaKnown RBP7.4□□□□□ -1.22
HMGB4-202ENST00000458277 EEA1Q15075 1411 aa7.4□□□□□ -1.22
HMGB4-202ENST00000458277 CANXP27824 592 aaKnown RBP7.39□□□□□ -1.23
HMGB4-202ENST00000458277 NPM2Q86SE8 214 aaKnown RBP7.39□□□□□ -1.23
HMGB4-202ENST00000458277 ARID3AQ99856 593 aa7.39□□□□□ -1.23
HMGB4-202ENST00000458277 WRNQ14191 1432 aaPredicted RBP eCLIP7.38□□□□□ -1.23
HMGB4-202ENST00000458277 SCO2A0A1W2PP80 73 aa7.38□□□□□ -1.23
HMGB4-202ENST00000458277 SHISA8B8ZZ34 492 aa7.38□□□□□ -1.23
HMGB4-202ENST00000458277 ADH1AP07327 375 aa7.38□□□□□ -1.23
HMGB4-202ENST00000458277 PTGIRP43119 386 aa7.38□□□□□ -1.23
HMGB4-202ENST00000458277 ARHGAP9Q9BRR9 750 aa7.38□□□□□ -1.23
HMGB4-202ENST00000458277 OXCT2Q9BYC2 517 aaPredicted RBP7.38□□□□□ -1.23
HMGB4-202ENST00000458277 SUV39H2Q9H5I1 410 aa7.38□□□□□ -1.23
HMGB4-202ENST00000458277 CC2D2AQ9P2K1 1620 aa7.38□□□□□ -1.23
HMGB4-202ENST00000458277 NUTM2BA6NNL0 878 aaPredicted RBP7.37□□□□□ -1.23
HMGB4-202ENST00000458277 NUTM2EB1AL46 878 aaPredicted RBP7.37□□□□□ -1.23
HMGB4-202ENST00000458277 TPM2P07951 284 aa7.37□□□□□ -1.23
HMGB4-202ENST00000458277 TNNT2P45379 298 aaPredicted RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms