RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 GOPCQ9HD26 462 aa8.94□□□□□ -0.98
VPS29-202ENST00000447578 ESPNB1AK53 854 aa8.93□□□□□ -0.98
VPS29-202ENST00000447578 TMEM259Q4ZIN3 620 aa8.93□□□□□ -0.98
VPS29-202ENST00000447578 RNF217Q8TC41 542 aa8.93□□□□□ -0.98
VPS29-202ENST00000447578 ADH1AP07327 375 aa8.92□□□□□ -0.98
VPS29-202ENST00000447578 LCE3BQ5TA77 95 aa8.92□□□□□ -0.98
VPS29-202ENST00000447578 VWA5B2Q8N398 1253 aa8.92□□□□□ -0.98
VPS29-202ENST00000447578 CYLDQ9NQC7 956 aa8.92□□□□□ -0.98
VPS29-202ENST00000447578 K7ELQ4 463 aaPredicted RBP8.91□□□□□ -0.98
VPS29-202ENST00000447578 GIGYF1O75420 1035 aaPredicted RBP8.91□□□□□ -0.98
VPS29-202ENST00000447578 SLURP2P0DP57 97 aa8.91□□□□□ -0.98
VPS29-202ENST00000447578 PTGIRP43119 386 aa8.91□□□□□ -0.98
VPS29-202ENST00000447578 WHAMMQ8TF30 809 aa8.91□□□□□ -0.98
VPS29-202ENST00000447578 NANOS1Q8WY41 292 aaKnown RBP8.91□□□□□ -0.98
VPS29-202ENST00000447578 GJD4Q96KN9 370 aaPredicted RBP8.91□□□□□ -0.98
VPS29-202ENST00000447578 FBXO45P0C2W1 286 aa8.9□□□□□ -0.98
VPS29-202ENST00000447578 ITGA6P23229 1130 aa8.9□□□□□ -0.98
VPS29-202ENST00000447578 RNFT1Q5M7Z0 435 aa8.9□□□□□ -0.98
VPS29-202ENST00000447578 FOXD4L5Q5VV16 416 aaPredicted RBP8.9□□□□□ -0.98
VPS29-202ENST00000447578 PCDHB9Q9Y5E1 797 aa8.9□□□□□ -0.98
VPS29-202ENST00000447578 SENP3-EIF4A1A0A087X0R7 540 aa8.89□□□□□ -0.99
VPS29-202ENST00000447578 CDC14CA4D256 554 aa8.89□□□□□ -0.99
VPS29-202ENST00000447578 ZBBXA8MT70 800 aa8.89□□□□□ -0.99
VPS29-202ENST00000447578 GALNT6Q8NCL4 622 aa8.89□□□□□ -0.99
VPS29-202ENST00000447578 BRPF1P55201 1214 aaPredicted RBP8.87□□□□□ -0.99
VPS29-202ENST00000447578 SEPT12Q8IYM1 358 aa8.87□□□□□ -0.99
VPS29-202ENST00000447578 SV2AQ7L0J3 742 aa8.86□□□□□ -0.99
VPS29-202ENST00000447578 PRICKLE2Q7Z3G6 844 aa8.86□□□□□ -0.99
VPS29-202ENST00000447578 PROCP04070 461 aa8.85□□□□□ -0.99
VPS29-202ENST00000447578 RHOQP17081 205 aa8.85□□□□□ -0.99
VPS29-202ENST00000447578 LYSMD3Q7Z3D4 306 aa8.85□□□□□ -0.99
VPS29-202ENST00000447578 DCAF5Q96JK2 942 aa8.85□□□□□ -0.99
VPS29-202ENST00000447578 CUEDC1Q9NWM3 386 aaPredicted RBP8.85□□□□□ -0.99
VPS29-202ENST00000447578 ITGB2P05107 769 aa8.83□□□□□ -1
VPS29-202ENST00000447578 PHF20L1A8MW92 1017 aa8.82□□□□□ -1
VPS29-202ENST00000447578 ATP5J2-PTCD1G3V325 749 aa8.82□□□□□ -1
VPS29-202ENST00000447578 MEN1O00255 615 aa8.82□□□□□ -1
VPS29-202ENST00000447578 RNF144AP50876 292 aaPredicted RBP8.82□□□□□ -1
VPS29-202ENST00000447578 BTBD11A6QL63 1104 aa8.81□□□□□ -1
VPS29-202ENST00000447578 GPR37L1O60883 481 aa8.81□□□□□ -1
VPS29-202ENST00000447578 PRKCSHP14314 528 aaPredicted RBP8.81□□□□□ -1
VPS29-202ENST00000447578 SCTRP47872 440 aa8.81□□□□□ -1
VPS29-202ENST00000447578 MAP3K10Q02779 954 aa8.81□□□□□ -1
VPS29-202ENST00000447578 NR1H3Q13133 447 aa8.81□□□□□ -1
VPS29-202ENST00000447578 MTMR14Q8NCE2 650 aa8.81□□□□□ -1
VPS29-202ENST00000447578 SNRKQ9NRH2 765 aa8.81□□□□□ -1
VPS29-202ENST00000447578 A0A1W2PRU2 124 aa8.8□□□□□ -1
VPS29-202ENST00000447578 ERVK-9P63128 1117 aa8.8□□□□□ -1
VPS29-202ENST00000447578 KRTAP4-12Q9BQ66 201 aa8.8□□□□□ -1
VPS29-202ENST00000447578 CC2D2BQ6DHV5 1058 aa8.79□□□□□ -1
VPS29-202ENST00000447578 BANK1Q8NDB2 785 aa8.78□□□□□ -1
VPS29-202ENST00000447578 PCDHB11Q9Y5F2 797 aa8.78□□□□□ -1
VPS29-202ENST00000447578 POU4F2Q12837 409 aa8.77□□□□□ -1.01
VPS29-202ENST00000447578 GAS6Q14393 721 aa8.77□□□□□ -1.01
VPS29-202ENST00000447578 RNF20Q5VTR2 975 aa8.77□□□□□ -1.01
VPS29-202ENST00000447578 ENAMQ9NRM1 1142 aa8.77□□□□□ -1.01
VPS29-202ENST00000447578 GPR25O00155 361 aa8.76□□□□□ -1.01
VPS29-202ENST00000447578 ADAMTS2O95450 1211 aa8.76□□□□□ -1.01
VPS29-202ENST00000447578 LYPD4Q6UWN0 246 aa8.76□□□□□ -1.01
VPS29-202ENST00000447578 NDUFB9Q9Y6M9 179 aa8.76□□□□□ -1.01
VPS29-202ENST00000447578 DBN1Q16643 649 aa8.75□□□□□ -1.01
VPS29-202ENST00000447578 SLC27A3Q5K4L6 730 aa8.75□□□□□ -1.01
VPS29-202ENST00000447578 RIPOR1Q6ZS17 1223 aa8.75□□□□□ -1.01
VPS29-202ENST00000447578 TRIM52Q96A61 297 aa8.75□□□□□ -1.01
VPS29-202ENST00000447578 ZNF837Q96EG3 531 aaPredicted RBP8.75□□□□□ -1.01
VPS29-202ENST00000447578 NLRP3Q96P20 1036 aa8.75□□□□□ -1.01
VPS29-202ENST00000447578 OSBPL3Q9H4L5 887 aa8.75□□□□□ -1.01
VPS29-202ENST00000447578 ARHGEF10LQ9HCE6 1279 aa8.75□□□□□ -1.01
VPS29-202ENST00000447578 GPC1P35052 558 aa8.74□□□□□ -1.01
VPS29-202ENST00000447578 BAG6P46379 1132 aa8.74□□□□□ -1.01
VPS29-202ENST00000447578 MCCD1P59942 119 aaPredicted RBP8.74□□□□□ -1.01
VPS29-202ENST00000447578 CCDC125Q86Z20 511 aa8.74□□□□□ -1.01
VPS29-202ENST00000447578 KRTAP9-9Q9BYP9 154 aa8.74□□□□□ -1.01
VPS29-202ENST00000447578 KRTAP9-4Q9BYQ2 154 aa8.74□□□□□ -1.01
VPS29-202ENST00000447578 RAB6BQ9NRW1 208 aa8.74□□□□□ -1.01
VPS29-202ENST00000447578 TRAK2O60296 914 aa8.73□□□□□ -1.01
VPS29-202ENST00000447578 CLN3Q13286 438 aa8.73□□□□□ -1.01
VPS29-202ENST00000447578 CYP2U1Q7Z449 544 aa8.73□□□□□ -1.01
VPS29-202ENST00000447578 TRIM22Q8IYM9 498 aa8.73□□□□□ -1.01
VPS29-202ENST00000447578 BEND7Q8N7W2 519 aaPredicted RBP8.73□□□□□ -1.01
VPS29-202ENST00000447578 GAS2L1Q99501 681 aaPredicted RBP8.73□□□□□ -1.01
VPS29-202ENST00000447578 GRIP2Q9C0E4 1043 aa8.73□□□□□ -1.01
VPS29-202ENST00000447578 ZNF330Q9Y3S2 320 aaPredicted RBP8.73□□□□□ -1.01
VPS29-202ENST00000447578 SRSF11Q05519 484 aaKnown RBP8.72□□□□□ -1.01
VPS29-202ENST00000447578 CDCA7Q9BWT1 371 aaPredicted RBP8.72□□□□□ -1.01
VPS29-202ENST00000447578 CNTNAP5Q8WYK1 1306 aa8.72□□□□□ -1.01
VPS29-202ENST00000447578 SOCS7O14512 581 aa8.71□□□□□ -1.02
VPS29-202ENST00000447578 CELA2BP08218 269 aaPredicted RBP8.71□□□□□ -1.02
VPS29-202ENST00000447578 TPRNQ4KMQ1 711 aa8.71□□□□□ -1.02
VPS29-202ENST00000447578 NBPF10Q6P3W6 841 aaKnown RBP8.71□□□□□ -1.02
VPS29-202ENST00000447578 PODNQ7Z5L7 613 aa8.71□□□□□ -1.02
VPS29-202ENST00000447578 NBPF15Q8N660 670 aa8.71□□□□□ -1.02
VPS29-202ENST00000447578 GTPBP3Q969Y2 492 aaKnown RBP8.71□□□□□ -1.02
VPS29-202ENST00000447578 CCDC85AQ96PX6 553 aaPredicted RBP8.71□□□□□ -1.02
VPS29-202ENST00000447578 ESF1Q9H501 851 aaKnown RBP8.71□□□□□ -1.02
VPS29-202ENST00000447578 CEP126Q9P2H0 1117 aa8.71□□□□□ -1.02
VPS29-202ENST00000447578 DYRK1BQ9Y463 629 aa8.71□□□□□ -1.02
VPS29-202ENST00000447578 TSGA10IPQ3SY00 556 aa8.7□□□□□ -1.02
VPS29-202ENST00000447578 TBC1D2BQ9UPU7 963 aa8.7□□□□□ -1.02
VPS29-202ENST00000447578 KRTAP4-8A0A0G2JLE6 195 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms