RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 COG6Q9Y2V7 657 aa27.18■■□□□ 1.94
PTPRF-207ENST00000436724 RLBP1P12271 317 aa27.17■■□□□ 1.94
PTPRF-207ENST00000436724 RTF1Q92541 710 aaKnown RBP27.17■■□□□ 1.94
PTPRF-207ENST00000436724 C8orf58Q8NAV2 365 aa27.16■■□□□ 1.94
PTPRF-207ENST00000436724 CRB1P82279 1406 aa27.15■■□□□ 1.94
PTPRF-207ENST00000436724 VAMP4O75379 141 aa27.15■■□□□ 1.94
PTPRF-207ENST00000436724 CHL1O00533 1208 aa27.14■■□□□ 1.93
PTPRF-207ENST00000436724 MIS18AQ9NYP9 233 aa27.14■■□□□ 1.93
PTPRF-207ENST00000436724 SOS2Q07890 1332 aaPredicted RBP27.13■■□□□ 1.93
PTPRF-207ENST00000436724 GNAT3A8MTJ3 354 aa27.12■■□□□ 1.93
PTPRF-207ENST00000436724 CHRNA2Q15822 529 aa27.12■■□□□ 1.93
PTPRF-207ENST00000436724 CRYBG1Q9Y4K1 1723 aa27.12■■□□□ 1.93
PTPRF-207ENST00000436724 KRT24Q2M2I5 525 aa27.12■■□□□ 1.93
PTPRF-207ENST00000436724 TWISTNBQ3B726 338 aaPredicted RBP27.12■■□□□ 1.93
PTPRF-207ENST00000436724 ZKSCAN2Q63HK3 967 aa27.12■■□□□ 1.93
PTPRF-207ENST00000436724 ERBB3P21860 1342 aa27.12■■□□□ 1.93
PTPRF-207ENST00000436724 NOB1Q9ULX3 412 aaKnown RBP27.11■■□□□ 1.93
PTPRF-207ENST00000436724 TCERG1O14776 1098 aaKnown RBP27.1■■□□□ 1.93
PTPRF-207ENST00000436724 ALDH1L2Q3SY69 923 aa27.1■■□□□ 1.93
PTPRF-207ENST00000436724 MAP3K5Q99683 1374 aa27.09■■□□□ 1.93
PTPRF-207ENST00000436724 TRIM27P14373 513 aa27.09■■□□□ 1.93
PTPRF-207ENST00000436724 KIAA0232Q92628 1395 aa27.09■■□□□ 1.93
PTPRF-207ENST00000436724 IL17REQ8NFR9 667 aa27.08■■□□□ 1.93
PTPRF-207ENST00000436724 COL18A1P39060 1754 aa27.07■■□□□ 1.92
PTPRF-207ENST00000436724 HTATSF1O43719 755 aaKnown RBP27.07■■□□□ 1.92
PTPRF-207ENST00000436724 NCAPD2Q15021 1401 aa27.07■■□□□ 1.92
PTPRF-207ENST00000436724 ZNF428Q96B54 188 aa27.07■■□□□ 1.92
PTPRF-207ENST00000436724 ATF7IPQ6VMQ6 1270 aa27.06■■□□□ 1.92
PTPRF-207ENST00000436724 DZIP1LQ8IYY4 767 aaKnown RBP27.06■■□□□ 1.92
PTPRF-207ENST00000436724 FTSJ3Q8IY81 847 aaKnown RBP27.05■■□□□ 1.92
PTPRF-207ENST00000436724 TSPYL4Q9UJ04 414 aa27.05■■□□□ 1.92
PTPRF-207ENST00000436724 CAMTA1Q9Y6Y1 1673 aa27.05■■□□□ 1.92
PTPRF-207ENST00000436724 KIF16BQ96L93 1317 aa27.04■■□□□ 1.92
PTPRF-207ENST00000436724 MSH5O43196 834 aa27.04■■□□□ 1.92
PTPRF-207ENST00000436724 LRRC37A3O60309 1634 aa27.04■■□□□ 1.92
PTPRF-207ENST00000436724 MRPL50Q8N5N7 158 aaKnown RBP27.03■■□□□ 1.92
PTPRF-207ENST00000436724 NLRP2Q9NX02 1062 aa27.03■■□□□ 1.92
PTPRF-207ENST00000436724 NHSL1Q5SYE7 1610 aa27.02■■□□□ 1.92
PTPRF-207ENST00000436724 CPDO75976 1380 aa27.02■■□□□ 1.92
PTPRF-207ENST00000436724 KDM2BQ8NHM5 1336 aa27.01■■□□□ 1.91
PTPRF-207ENST00000436724 MVPQ14764 893 aaKnown RBP27.01■■□□□ 1.91
PTPRF-207ENST00000436724 ZNF530Q6P9A1 599 aaPredicted RBP27.01■■□□□ 1.91
PTPRF-207ENST00000436724 CSB-PGBD3P0DP91 1061 aa27■■□□□ 1.91
PTPRF-207ENST00000436724 BRPF1P55201 1214 aaPredicted RBP27■■□□□ 1.91
PTPRF-207ENST00000436724 PLEKHO1Q53GL0 409 aaPredicted RBP27■■□□□ 1.91
PTPRF-207ENST00000436724 LGR6Q9HBX8 967 aa27■■□□□ 1.91
PTPRF-207ENST00000436724 LMO7Q8WWI1 1683 aa27■■□□□ 1.91
PTPRF-207ENST00000436724 IPO8O15397 1037 aaKnown RBP26.99■■□□□ 1.91
PTPRF-207ENST00000436724 HAP1P54257 671 aaPredicted RBP26.98■■□□□ 1.91
PTPRF-207ENST00000436724 SKAP1Q86WV1 359 aa26.98■■□□□ 1.91
PTPRF-207ENST00000436724 LTBP4Q8N2S1 1624 aa26.98■■□□□ 1.91
PTPRF-207ENST00000436724 PRDM11Q9NQV5 511 aa26.98■■□□□ 1.91
PTPRF-207ENST00000436724 MS4A1P11836 297 aa26.97■■□□□ 1.91
PTPRF-207ENST00000436724 AMOTQ4VCS5 1084 aa26.97■■□□□ 1.91
PTPRF-207ENST00000436724 TMEM57Q8N5G2 664 aa26.97■■□□□ 1.91
PTPRF-207ENST00000436724 CEMIPQ8WUJ3 1361 aa26.96■■□□□ 1.91
PTPRF-207ENST00000436724 AKAP4Q5JQC9 854 aa26.96■■□□□ 1.91
PTPRF-207ENST00000436724 MPRIPQ6WCQ1 1025 aa26.96■■□□□ 1.91
PTPRF-207ENST00000436724 ITPRIPQ8IWB1 547 aa26.96■■□□□ 1.91
PTPRF-207ENST00000436724 TAF7Q15545 349 aaPredicted RBP26.95■■□□□ 1.91
PTPRF-207ENST00000436724 FAM208AQ9UK61 1670 aaKnown RBP26.95■■□□□ 1.9
PTPRF-207ENST00000436724 CENPQQ7L2Z9 268 aaPredicted RBP26.94■■□□□ 1.9
PTPRF-207ENST00000436724 ABCA3Q99758 1704 aa26.94■■□□□ 1.9
PTPRF-207ENST00000436724 ABCC6O95255 1503 aa26.94■■□□□ 1.9
PTPRF-207ENST00000436724 IGHDP01880 384 aa26.94■■□□□ 1.9
PTPRF-207ENST00000436724 C1orf141Q5JVX7 400 aa26.93■■□□□ 1.9
PTPRF-207ENST00000436724 RAPGEF4Q8WZA2 1011 aa26.93■■□□□ 1.9
PTPRF-207ENST00000436724 PCDHB15Q9Y5E8 787 aa26.93■■□□□ 1.9
PTPRF-207ENST00000436724 ROBO1Q9Y6N7 1651 aa26.93■■□□□ 1.9
PTPRF-207ENST00000436724 MEGF6O75095 1541 aa26.91■■□□□ 1.9
PTPRF-207ENST00000436724 ARHGAP45Q92619 1136 aa26.9■■□□□ 1.9
PTPRF-207ENST00000436724 DDX19BQ9UMR2 479 aa26.89■■□□□ 1.9
PTPRF-207ENST00000436724 RNMTO43148 476 aaKnown RBP26.88■■□□□ 1.89
PTPRF-207ENST00000436724 TATP17735 454 aaPredicted RBP26.88■■□□□ 1.89
PTPRF-207ENST00000436724 TEFQ10587 303 aa26.87■■□□□ 1.89
PTPRF-207ENST00000436724 AAMPQ13685 434 aa26.87■■□□□ 1.89
PTPRF-207ENST00000436724 VIRMAQ69YN4 1812 aaKnown RBP26.87■■□□□ 1.89
PTPRF-207ENST00000436724 BABAM1Q9NWV8 329 aa26.86■■□□□ 1.89
PTPRF-207ENST00000436724 SLC4A2P04920 1241 aa26.85■■□□□ 1.89
PTPRF-207ENST00000436724 COL5A2P05997 1499 aaPredicted RBP26.85■■□□□ 1.89
PTPRF-207ENST00000436724 WDR17Q8IZU2 1322 aa26.84■■□□□ 1.89
PTPRF-207ENST00000436724 KCNQ3O43525 872 aa26.84■■□□□ 1.89
PTPRF-207ENST00000436724 NECTIN2Q92692 538 aa26.84■■□□□ 1.89
PTPRF-207ENST00000436724 ABCC4O15439 1325 aa26.84■■□□□ 1.89
PTPRF-207ENST00000436724 TOM1L2Q6ZVM7 507 aa26.84■■□□□ 1.89
PTPRF-207ENST00000436724 API5Q9BZZ5 524 aaKnown RBP26.82■■□□□ 1.88
PTPRF-207ENST00000436724 BTBD11A6QL63 1104 aa26.82■■□□□ 1.88
PTPRF-207ENST00000436724 STRN4Q9NRL3 753 aa26.82■■□□□ 1.88
PTPRF-207ENST00000436724 ZBTB40Q9NUA8 1239 aa26.82■■□□□ 1.88
PTPRF-207ENST00000436724 SPG7Q9UQ90 795 aa26.81■■□□□ 1.88
PTPRF-207ENST00000436724 G2E3Q7L622 706 aa26.81■■□□□ 1.88
PTPRF-207ENST00000436724 RGS12O14924 1447 aa26.8■■□□□ 1.88
PTPRF-207ENST00000436724 KDM3BQ7LBC6 1761 aa26.8■■□□□ 1.88
PTPRF-207ENST00000436724 AHDC1Q5TGY3 1603 aaPredicted RBP26.8■■□□□ 1.88
PTPRF-207ENST00000436724 PHKG2P15735 406 aa26.8■■□□□ 1.88
PTPRF-207ENST00000436724 EIF4A1P60842 406 aaKnown RBP26.8■■□□□ 1.88
PTPRF-207ENST00000436724 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.79■■□□□ 1.88
PTPRF-207ENST00000436724 LARP1Q6PKG0 1096 aaKnown RBP26.78■■□□□ 1.88
PTPRF-207ENST00000436724 ZBTB7BO15156 539 aaPredicted RBP26.78■■□□□ 1.88
PTPRF-207ENST00000436724 CYP27B1O15528 508 aa26.78■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms