RNA–Protein interactions for RNA: ENST00000422544.2

PDGFC-202, Transcript of platelet derived growth factor C, humanhuman

TSL 5 BASIC

Gene PDGFC, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-202ENST00000422544 CFAP53Q96M91 514 aa12.48□□□□□ -0.41
PDGFC-202ENST00000422544 RGPD5Q99666 1765 aa12.48□□□□□ -0.41
PDGFC-202ENST00000422544 MYBBP1AQ9BQG0 1328 aaKnown RBP12.47□□□□□ -0.41
PDGFC-202ENST00000422544 HOXD11P31277 338 aaPredicted RBP12.47□□□□□ -0.41
PDGFC-202ENST00000422544 IL2RBP14784 551 aa12.46□□□□□ -0.41
PDGFC-202ENST00000422544 R3HDM1Q15032 1099 aaKnown RBP12.46□□□□□ -0.41
PDGFC-202ENST00000422544 CDCA7Q9BWT1 371 aaPredicted RBP12.46□□□□□ -0.41
PDGFC-202ENST00000422544 GOLGB1Q14789 3259 aaKnown RBP12.44□□□□□ -0.42
PDGFC-202ENST00000422544 IGSF1Q8N6C5 1336 aa12.44□□□□□ -0.42
PDGFC-202ENST00000422544 EXOC5O00471 708 aa12.44□□□□□ -0.42
PDGFC-202ENST00000422544 U2SURPO15042 1029 aaKnown RBP12.44□□□□□ -0.42
PDGFC-202ENST00000422544 SULT6B1Q6IMI4 303 aa12.44□□□□□ -0.42
PDGFC-202ENST00000422544 AEBP1Q8IUX7 1158 aa12.44□□□□□ -0.42
PDGFC-202ENST00000422544 RAPGEF4Q8WZA2 1011 aa12.44□□□□□ -0.42
PDGFC-202ENST00000422544 SBF2Q86WG5 1849 aa12.44□□□□□ -0.42
PDGFC-202ENST00000422544 HMOX1P09601 288 aa12.43□□□□□ -0.42
PDGFC-202ENST00000422544 TATP17735 454 aaPredicted RBP12.43□□□□□ -0.42
PDGFC-202ENST00000422544 PDE3BQ13370 1112 aa12.43□□□□□ -0.42
PDGFC-202ENST00000422544 EZH2Q15910 746 aaKnown RBP12.43□□□□□ -0.42
PDGFC-202ENST00000422544 DDB1Q16531 1140 aa12.43□□□□□ -0.42
PDGFC-202ENST00000422544 CAMKK2Q96RR4 588 aa12.43□□□□□ -0.42
PDGFC-202ENST00000422544 NUDCQ9Y266 331 aa12.43□□□□□ -0.42
PDGFC-202ENST00000422544 COL3A1P02461 1466 aaPredicted RBP12.42□□□□□ -0.42
PDGFC-202ENST00000422544 CASZ1Q86V15 1759 aa12.41□□□□□ -0.42
PDGFC-202ENST00000422544 U2AF1L5P0DN76 240 aaPredicted RBP12.41□□□□□ -0.42
PDGFC-202ENST00000422544 BAG6P46379 1132 aa12.41□□□□□ -0.42
PDGFC-202ENST00000422544 U2AF1Q01081 240 aaKnown RBP eCLIP12.41□□□□□ -0.42
PDGFC-202ENST00000422544 DIEXFQ68CQ4 756 aaKnown RBP12.41□□□□□ -0.42
PDGFC-202ENST00000422544 ZCRB1Q8TBF4 217 aaKnown RBP12.41□□□□□ -0.42
PDGFC-202ENST00000422544 CCDC184Q52MB2 194 aa12.4□□□□□ -0.42
PDGFC-202ENST00000422544 DDX54Q8TDD1 881 aaKnown RBP12.4□□□□□ -0.42
PDGFC-202ENST00000422544 MEGF6O75095 1541 aa12.4□□□□□ -0.42
PDGFC-202ENST00000422544 NCAPD2Q15021 1401 aa12.39□□□□□ -0.43
PDGFC-202ENST00000422544 SF3B2Q13435 895 aaKnown RBP12.39□□□□□ -0.43
PDGFC-202ENST00000422544 MARCH10Q8NA82 808 aaPredicted RBP12.39□□□□□ -0.43
PDGFC-202ENST00000422544 RGPD2P0DJD1 1756 aa12.38□□□□□ -0.43
PDGFC-202ENST00000422544 KDRP35968 1356 aa12.38□□□□□ -0.43
PDGFC-202ENST00000422544 OVOS2A0A0G2JMS6 1433 aa12.37□□□□□ -0.43
PDGFC-202ENST00000422544 PLEKHO1Q53GL0 409 aaPredicted RBP12.37□□□□□ -0.43
PDGFC-202ENST00000422544 RSPH6AQ9H0K4 717 aa12.37□□□□□ -0.43
PDGFC-202ENST00000422544 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.37□□□□□ -0.43
PDGFC-202ENST00000422544 SPG7Q9UQ90 795 aa12.37□□□□□ -0.43
PDGFC-202ENST00000422544 FAM208AQ9UK61 1670 aaKnown RBP12.37□□□□□ -0.43
PDGFC-202ENST00000422544 DCAF8L1A6NGE4 600 aa12.36□□□□□ -0.43
PDGFC-202ENST00000422544 FCHSD2O94868 740 aa12.36□□□□□ -0.43
PDGFC-202ENST00000422544 PRKAR2BP31323 418 aa12.36□□□□□ -0.43
PDGFC-202ENST00000422544 FAM196AQ6ZSG2 479 aa12.36□□□□□ -0.43
PDGFC-202ENST00000422544 MRS2Q9HD23 443 aa12.36□□□□□ -0.43
PDGFC-202ENST00000422544 CHD4Q14839 1912 aa12.36□□□□□ -0.43
PDGFC-202ENST00000422544 TNS2Q63HR2 1409 aa12.36□□□□□ -0.43
PDGFC-202ENST00000422544 CYP27B1O15528 508 aa12.35□□□□□ -0.43
PDGFC-202ENST00000422544 WDR43Q15061 677 aaKnown RBP eCLIP12.35□□□□□ -0.43
PDGFC-202ENST00000422544 AMOTQ4VCS5 1084 aa12.35□□□□□ -0.43
PDGFC-202ENST00000422544 PHACTR3Q96KR7 559 aa12.35□□□□□ -0.43
PDGFC-202ENST00000422544 RGPD3A6NKT7 1758 aaPredicted RBP12.34□□□□□ -0.43
PDGFC-202ENST00000422544 RGPD4Q7Z3J3 1758 aa12.34□□□□□ -0.43
PDGFC-202ENST00000422544 YY1P25490 414 aa12.34□□□□□ -0.43
PDGFC-202ENST00000422544 MTHFSDQ2M296 383 aaKnown RBP12.34□□□□□ -0.43
PDGFC-202ENST00000422544 ADAMTS8Q9UP79 889 aa12.34□□□□□ -0.43
PDGFC-202ENST00000422544 PCDH11XQ9BZA7 1347 aa12.34□□□□□ -0.43
PDGFC-202ENST00000422544 PCDH11YQ9BZA8 1340 aa12.34□□□□□ -0.43
PDGFC-202ENST00000422544 PARP4Q9UKK3 1724 aaKnown RBP12.34□□□□□ -0.43
PDGFC-202ENST00000422544 TRIM37O94972 964 aa12.33□□□□□ -0.44
PDGFC-202ENST00000422544 PHKG2P15735 406 aa12.33□□□□□ -0.44
PDGFC-202ENST00000422544 ZNF530Q6P9A1 599 aaPredicted RBP12.33□□□□□ -0.44
PDGFC-202ENST00000422544 IFNL2Q8IZJ0 200 aa12.33□□□□□ -0.44
PDGFC-202ENST00000422544 MIER1Q8N108 512 aa12.33□□□□□ -0.44
PDGFC-202ENST00000422544 ACSBG1Q96GR2 724 aa12.33□□□□□ -0.44
PDGFC-202ENST00000422544 LRRC37A3O60309 1634 aa12.33□□□□□ -0.44
PDGFC-202ENST00000422544 PNISRQ8TF01 805 aaKnown RBP12.32□□□□□ -0.44
PDGFC-202ENST00000422544 PLEKHF1Q96S99 279 aa12.32□□□□□ -0.44
PDGFC-202ENST00000422544 KCNQ2O43526 872 aa12.31□□□□□ -0.44
PDGFC-202ENST00000422544 NKX1-1Q15270 411 aaPredicted RBP12.31□□□□□ -0.44
PDGFC-202ENST00000422544 C1orf141Q5JVX7 400 aa12.31□□□□□ -0.44
PDGFC-202ENST00000422544 PTF1AQ7RTS3 328 aa12.31□□□□□ -0.44
PDGFC-202ENST00000422544 CCDC146Q8IYE0 955 aa12.31□□□□□ -0.44
PDGFC-202ENST00000422544 PDGFDQ9GZP0 370 aaPredicted RBP12.31□□□□□ -0.44
PDGFC-202ENST00000422544 PNNQ9H307 717 aaKnown RBP12.31□□□□□ -0.44
PDGFC-202ENST00000422544 WNK3Q9BYP7 1800 aa12.31□□□□□ -0.44
PDGFC-202ENST00000422544 PLEKHG2Q9H7P9 1386 aa12.3□□□□□ -0.44
PDGFC-202ENST00000422544 NEFMP07197 916 aa12.3□□□□□ -0.44
PDGFC-202ENST00000422544 PRIM1P49642 420 aaKnown RBP12.3□□□□□ -0.44
PDGFC-202ENST00000422544 AKAP4Q5JQC9 854 aa12.3□□□□□ -0.44
PDGFC-202ENST00000422544 GAS2L2Q8NHY3 880 aa12.3□□□□□ -0.44
PDGFC-202ENST00000422544 HSP90AB1P08238 724 aaKnown RBP12.29□□□□□ -0.44
PDGFC-202ENST00000422544 MPRIPQ6WCQ1 1025 aa12.29□□□□□ -0.44
PDGFC-202ENST00000422544 SYTL4Q96C24 671 aaPredicted RBP12.29□□□□□ -0.44
PDGFC-202ENST00000422544 BCL11BQ9C0K0 894 aaPredicted RBP12.29□□□□□ -0.44
PDGFC-202ENST00000422544 BCL9O00512 1426 aa12.28□□□□□ -0.44
PDGFC-202ENST00000422544 CCER2I3L3R5 266 aa12.28□□□□□ -0.44
PDGFC-202ENST00000422544 FAM9BQ8IZU0 186 aa12.28□□□□□ -0.44
PDGFC-202ENST00000422544 DCAF5Q96JK2 942 aa12.28□□□□□ -0.44
PDGFC-202ENST00000422544 LGR6Q9HBX8 967 aa12.28□□□□□ -0.44
PDGFC-202ENST00000422544 MAPK8IP3Q9UPT6 1336 aa12.28□□□□□ -0.44
PDGFC-202ENST00000422544 GNAT3A8MTJ3 354 aa12.27□□□□□ -0.45
PDGFC-202ENST00000422544 APBA3O96018 575 aa12.27□□□□□ -0.45
PDGFC-202ENST00000422544 RUNDC1Q96C34 613 aa12.27□□□□□ -0.45
PDGFC-202ENST00000422544 ANO8Q9HCE9 1232 aaPredicted RBP12.27□□□□□ -0.45
PDGFC-202ENST00000422544 NFE2L2Q16236 605 aa12.26□□□□□ -0.45
PDGFC-202ENST00000422544 ERVV-2B6SEH9 535 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms