RNA–Protein interactions for RNA: ENST00000421670.3

DDX55-203, Transcript of DEAD-box helicase 55, humanhuman

TSL 1 (best) BASIC

Gene DDX55, Length 1,574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-203ENST00000421670 BRWD3Q6RI45 1802 aa20.89■□□□□ 0.93
DDX55-203ENST00000421670 FCHSD2O94868 740 aa20.89■□□□□ 0.93
DDX55-203ENST00000421670 IL2RBP14784 551 aa20.89■□□□□ 0.93
DDX55-203ENST00000421670 POTEAQ6S8J7 498 aa20.87■□□□□ 0.93
DDX55-203ENST00000421670 BARGINQ6ZT62 677 aa20.87■□□□□ 0.93
DDX55-203ENST00000421670 TATP17735 454 aaPredicted RBP20.86■□□□□ 0.93
DDX55-203ENST00000421670 PLEKHF1Q96S99 279 aa20.86■□□□□ 0.93
DDX55-203ENST00000421670 EP400Q96L91 3159 aa20.86■□□□□ 0.93
DDX55-203ENST00000421670 PHACTR3Q96KR7 559 aa20.85■□□□□ 0.93
DDX55-203ENST00000421670 TNS2Q63HR2 1409 aa20.85■□□□□ 0.93
DDX55-203ENST00000421670 A0A0G2JS52 829 aa20.85■□□□□ 0.93
DDX55-203ENST00000421670 MYT1Q01538 1121 aa20.85■□□□□ 0.93
DDX55-203ENST00000421670 MAPK8IP3Q9UPT6 1336 aa20.84■□□□□ 0.93
DDX55-203ENST00000421670 RBM6P78332 1123 aaKnown RBP20.84■□□□□ 0.93
DDX55-203ENST00000421670 SENP3-EIF4A1A0A087X0R7 540 aa20.83■□□□□ 0.92
DDX55-203ENST00000421670 RUNDC1Q96C34 613 aa20.82■□□□□ 0.92
DDX55-203ENST00000421670 PNNQ9H307 717 aaKnown RBP20.82■□□□□ 0.92
DDX55-203ENST00000421670 PLEKHG2Q9H7P9 1386 aa20.82■□□□□ 0.92
DDX55-203ENST00000421670 CDCA7Q9BWT1 371 aaPredicted RBP20.81■□□□□ 0.92
DDX55-203ENST00000421670 NEFMP07197 916 aa20.8■□□□□ 0.92
DDX55-203ENST00000421670 RXRBP28702 533 aa20.8■□□□□ 0.92
DDX55-203ENST00000421670 RGS12O14924 1447 aa20.8■□□□□ 0.92
DDX55-203ENST00000421670 MTHFSDQ2M296 383 aaKnown RBP20.8■□□□□ 0.92
DDX55-203ENST00000421670 ONECUT3O60422 494 aaPredicted RBP20.79■□□□□ 0.92
DDX55-203ENST00000421670 DDB1Q16531 1140 aa20.79■□□□□ 0.92
DDX55-203ENST00000421670 PLEKHO1Q53GL0 409 aaPredicted RBP20.79■□□□□ 0.92
DDX55-203ENST00000421670 ZCRB1Q8TBF4 217 aaKnown RBP20.79■□□□□ 0.92
DDX55-203ENST00000421670 SCN11AQ9UI33 1791 aa20.78■□□□□ 0.92
DDX55-203ENST00000421670 SEPT12Q8IYM1 358 aa20.78■□□□□ 0.92
DDX55-203ENST00000421670 SPG7Q9UQ90 795 aa20.78■□□□□ 0.92
DDX55-203ENST00000421670 TOGARAM1Q9Y4F4 1720 aa20.78■□□□□ 0.92
DDX55-203ENST00000421670 DOT1LQ8TEK3 1739 aa20.77■□□□□ 0.92
DDX55-203ENST00000421670 APAF1O14727 1248 aa20.77■□□□□ 0.92
DDX55-203ENST00000421670 AMOTQ4VCS5 1084 aa20.77■□□□□ 0.92
DDX55-203ENST00000421670 ZNF530Q6P9A1 599 aaPredicted RBP20.77■□□□□ 0.92
DDX55-203ENST00000421670 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.77■□□□□ 0.923e-9■■■■□ 22.1
DDX55-203ENST00000421670 RRP7AQ9Y3A4 280 aaKnown RBP20.77■□□□□ 0.92
DDX55-203ENST00000421670 PCDH11XQ9BZA7 1347 aa20.77■□□□□ 0.92
DDX55-203ENST00000421670 PCDH11YQ9BZA8 1340 aa20.77■□□□□ 0.92
DDX55-203ENST00000421670 EXOC5O00471 708 aa20.76■□□□□ 0.91
DDX55-203ENST00000421670 CYP27B1O15528 508 aa20.76■□□□□ 0.91
DDX55-203ENST00000421670 GAS2L2Q8NHY3 880 aa20.76■□□□□ 0.91
DDX55-203ENST00000421670 DDX54Q8TDD1 881 aaKnown RBP20.76■□□□□ 0.91
DDX55-203ENST00000421670 NEUROD2Q15784 382 aa20.75■□□□□ 0.91
DDX55-203ENST00000421670 NFE2L2Q16236 605 aa20.75■□□□□ 0.91
DDX55-203ENST00000421670 ADAMTS7Q9UKP4 1686 aa20.75■□□□□ 0.91
DDX55-203ENST00000421670 KAT6BQ8WYB5 2073 aa20.74■□□□□ 0.91
DDX55-203ENST00000421670 MAP3K5Q99683 1374 aa20.74■□□□□ 0.91
DDX55-203ENST00000421670 TMPOP42166 694 aaKnown RBP20.74■□□□□ 0.91
DDX55-203ENST00000421670 ITGB4P16144 1822 aa20.73■□□□□ 0.91
DDX55-203ENST00000421670 PHKG2P15735 406 aa20.72■□□□□ 0.91
DDX55-203ENST00000421670 C1orf141Q5JVX7 400 aa20.72■□□□□ 0.91
DDX55-203ENST00000421670 SBF2Q86WG5 1849 aa20.72■□□□□ 0.91
DDX55-203ENST00000421670 IFNL2Q8IZJ0 200 aa20.72■□□□□ 0.91
DDX55-203ENST00000421670 MARCH10Q8NA82 808 aaPredicted RBP20.72■□□□□ 0.91
DDX55-203ENST00000421670 SALL2Q9Y467 1007 aaPredicted RBP20.72■□□□□ 0.91
DDX55-203ENST00000421670 KDM6AO15550 1401 aaPredicted RBP20.71■□□□□ 0.91
DDX55-203ENST00000421670 RIPK4P57078 832 aa20.71■□□□□ 0.91
DDX55-203ENST00000421670 PDE3BQ13370 1112 aa20.71■□□□□ 0.91
DDX55-203ENST00000421670 AKAP4Q5JQC9 854 aa20.71■□□□□ 0.91
DDX55-203ENST00000421670 SIPA1L3O60292 1781 aaPredicted RBP20.71■□□□□ 0.91
DDX55-203ENST00000421670 FAM182BQ5T319 152 aa20.7■□□□□ 0.9
DDX55-203ENST00000421670 GNAT3A8MTJ3 354 aa20.69■□□□□ 0.9
DDX55-203ENST00000421670 HNRNPUQ00839 825 aaKnown RBP eCLIP20.68■□□□□ 0.9
DDX55-203ENST00000421670 MPRIPQ6WCQ1 1025 aa20.68■□□□□ 0.9
DDX55-203ENST00000421670 DCTN1Q14203 1278 aa20.68■□□□□ 0.9
DDX55-203ENST00000421670 KRT27Q7Z3Y8 459 aa20.68■□□□□ 0.9
DDX55-203ENST00000421670 MCM10Q7L590 875 aa20.67■□□□□ 0.9
DDX55-203ENST00000421670 YTHDC1Q96MU7 727 aaKnown RBP20.67■□□□□ 0.9
DDX55-203ENST00000421670 TRIM35Q9UPQ4 493 aa20.67■□□□□ 0.9
DDX55-203ENST00000421670 NHSQ6T4R5 1651 aa20.66■□□□□ 0.9
DDX55-203ENST00000421670 RTF1Q92541 710 aaKnown RBP20.66■□□□□ 0.9
DDX55-203ENST00000421670 THUMPD2Q9BTF0 503 aaKnown RBP20.66■□□□□ 0.9
DDX55-203ENST00000421670 LGR6Q9HBX8 967 aa20.65■□□□□ 0.9
DDX55-203ENST00000421670 MRC1P22897 1456 aa20.65■□□□□ 0.9
DDX55-203ENST00000421670 HSP90AB1P08238 724 aaKnown RBP20.64■□□□□ 0.9
DDX55-203ENST00000421670 NKX1-1Q15270 411 aaPredicted RBP20.64■□□□□ 0.9
DDX55-203ENST00000421670 DCAF5Q96JK2 942 aa20.64■□□□□ 0.9
DDX55-203ENST00000421670 LMOD3Q0VAK6 560 aa20.63■□□□□ 0.89
DDX55-203ENST00000421670 IL17REQ8NFR9 667 aa20.63■□□□□ 0.89
DDX55-203ENST00000421670 CEMIPQ8WUJ3 1361 aa20.63■□□□□ 0.89
DDX55-203ENST00000421670 RNMTO43148 476 aaKnown RBP20.63■□□□□ 0.89
DDX55-203ENST00000421670 BTAF1O14981 1849 aa20.62■□□□□ 0.89
DDX55-203ENST00000421670 HTATSF1O43719 755 aaKnown RBP20.62■□□□□ 0.89
DDX55-203ENST00000421670 CCDC27Q2M243 656 aa20.61■□□□□ 0.89
DDX55-203ENST00000421670 WWC1Q8IX03 1113 aa20.61■□□□□ 0.89
DDX55-203ENST00000421670 ACSBG1Q96GR2 724 aa20.61■□□□□ 0.89
DDX55-203ENST00000421670 KDM3BQ7LBC6 1761 aa20.61■□□□□ 0.89
DDX55-203ENST00000421670 PAPPAQ13219 1627 aa20.6■□□□□ 0.89
DDX55-203ENST00000421670 BCL9O00512 1426 aa20.6■□□□□ 0.89
DDX55-203ENST00000421670 NCBP3Q53F19 620 aaKnown RBP20.59■□□□□ 0.89
DDX55-203ENST00000421670 NGEFQ8N5V2 710 aa20.59■□□□□ 0.89
DDX55-203ENST00000421670 SYTL4Q96C24 671 aaPredicted RBP20.59■□□□□ 0.89
DDX55-203ENST00000421670 TNS1Q9HBL0 1735 aaKnown RBP20.58■□□□□ 0.89
DDX55-203ENST00000421670 ZNF521Q96K83 1311 aa20.58■□□□□ 0.89
DDX55-203ENST00000421670 TEFQ10587 303 aa20.57■□□□□ 0.88
DDX55-203ENST00000421670 SLC52A2Q9HAB3 445 aa20.57■□□□□ 0.88
DDX55-203ENST00000421670 ERVV-2B6SEH9 535 aa20.56■□□□□ 0.88
DDX55-203ENST00000421670 KCNQ2O43526 872 aa20.56■□□□□ 0.88
DDX55-203ENST00000421670 PRIM1P49642 420 aaKnown RBP20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms