RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 U2AF1L5P0DN76 240 aaPredicted RBP39.21■■■■□ 3.87
USP42-202ENST00000404008 U2AF1Q01081 240 aaKnown RBP eCLIP39.21■■■■□ 3.87
USP42-202ENST00000404008 PLEKHG2Q9H7P9 1386 aa39.21■■■■□ 3.87
USP42-202ENST00000404008 DDB1Q16531 1140 aa39.21■■■■□ 3.87
USP42-202ENST00000404008 EXOC5O00471 708 aa39.17■■■■□ 3.86
USP42-202ENST00000404008 MRS2Q9HD23 443 aa39.17■■■■□ 3.86
USP42-202ENST00000404008 RSPH6AQ9H0K4 717 aa39.15■■■■□ 3.86
USP42-202ENST00000404008 ZCRB1Q8TBF4 217 aaKnown RBP39.14■■■■□ 3.86
USP42-202ENST00000404008 FCHSD2O94868 740 aa39.12■■■■□ 3.85
USP42-202ENST00000404008 PDE3BQ13370 1112 aa39.12■■■■□ 3.85
USP42-202ENST00000404008 KRT27Q7Z3Y8 459 aa39.12■■■■□ 3.85
USP42-202ENST00000404008 EP400Q96L91 3159 aa39.12■■■■□ 3.85
USP42-202ENST00000404008 WDR43Q15061 677 aaKnown RBP eCLIP39.11■■■■□ 3.85
USP42-202ENST00000404008 MIER1Q8N108 512 aa39.11■■■■□ 3.85
USP42-202ENST00000404008 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP39.11■■■■□ 3.85
USP42-202ENST00000404008 PRKAR2BP31323 418 aa39.08■■■■□ 3.85
USP42-202ENST00000404008 ILDR2Q71H61 639 aa39.08■■■■□ 3.85
USP42-202ENST00000404008 SPG7Q9UQ90 795 aa39.08■■■■□ 3.85
USP42-202ENST00000404008 CCER2I3L3R5 266 aa39.07■■■■□ 3.84
USP42-202ENST00000404008 MARCH10Q8NA82 808 aaPredicted RBP39.07■■■■□ 3.84
USP42-202ENST00000404008 AMOTQ4VCS5 1084 aa39.06■■■■□ 3.84
USP42-202ENST00000404008 PLEKHO1Q53GL0 409 aaPredicted RBP39.06■■■■□ 3.84
USP42-202ENST00000404008 PNISRQ8TF01 805 aaKnown RBP39.06■■■■□ 3.84
USP42-202ENST00000404008 PCDH11XQ9BZA7 1347 aa39.06■■■■□ 3.84
USP42-202ENST00000404008 PCDH11YQ9BZA8 1340 aa39.06■■■■□ 3.84
USP42-202ENST00000404008 ADAMTS8Q9UP79 889 aa39.05■■■■□ 3.84
USP42-202ENST00000404008 DDX54Q8TDD1 881 aaKnown RBP39.04■■■■□ 3.84
USP42-202ENST00000404008 FAM182BQ5T319 152 aa39.01■■■■□ 3.84
USP42-202ENST00000404008 PLEKHF1Q96S99 279 aa39.01■■■■□ 3.84
USP42-202ENST00000404008 CYP27B1O15528 508 aa39■■■■□ 3.83
USP42-202ENST00000404008 PHACTR3Q96KR7 559 aa39■■■■□ 3.83
USP42-202ENST00000404008 PNNQ9H307 717 aaKnown RBP39■■■■□ 3.83
USP42-202ENST00000404008 MTHFSDQ2M296 383 aaKnown RBP38.97■■■■□ 3.83
USP42-202ENST00000404008 SBF2Q86WG5 1849 aa38.97■■■■□ 3.83
USP42-202ENST00000404008 ZNF530Q6P9A1 599 aaPredicted RBP38.96■■■■□ 3.83
USP42-202ENST00000404008 BCL9O00512 1426 aa38.96■■■■□ 3.83
USP42-202ENST00000404008 PHKG2P15735 406 aa38.95■■■■□ 3.83
USP42-202ENST00000404008 IFNL2Q8IZJ0 200 aa38.95■■■■□ 3.83
USP42-202ENST00000404008 DOT1LQ8TEK3 1739 aa38.94■■■■□ 3.82
USP42-202ENST00000404008 VIRMAQ69YN4 1812 aaKnown RBP38.93■■■■□ 3.82
USP42-202ENST00000404008 NEFMP07197 916 aa38.92■■■■□ 3.82
USP42-202ENST00000404008 FAM196AQ6ZSG2 479 aa38.92■■■■□ 3.82
USP42-202ENST00000404008 TOGARAM1Q9Y4F4 1720 aa38.92■■■■□ 3.82
USP42-202ENST00000404008 CCDC146Q8IYE0 955 aa38.91■■■■□ 3.82
USP42-202ENST00000404008 GAS2L2Q8NHY3 880 aa38.91■■■■□ 3.82
USP42-202ENST00000404008 DLG5Q8TDM6 1919 aa38.91■■■■□ 3.82
USP42-202ENST00000404008 MAPK8IP3Q9UPT6 1336 aa38.9■■■■□ 3.82
USP42-202ENST00000404008 NKX1-1Q15270 411 aaPredicted RBP38.9■■■■□ 3.82
USP42-202ENST00000404008 C1orf141Q5JVX7 400 aa38.9■■■■□ 3.82
USP42-202ENST00000404008 RUNDC1Q96C34 613 aa38.89■■■■□ 3.82
USP42-202ENST00000404008 AKAP4Q5JQC9 854 aa38.88■■■■□ 3.81
USP42-202ENST00000404008 NHSQ6T4R5 1651 aa38.88■■■■□ 3.81
USP42-202ENST00000404008 SCN11AQ9UI33 1791 aa38.87■■■■□ 3.81
USP42-202ENST00000404008 ADAMTS7Q9UKP4 1686 aa38.86■■■■□ 3.81
USP42-202ENST00000404008 FAM9BQ8IZU0 186 aa38.86■■■■□ 3.81
USP42-202ENST00000404008 MAP3K5Q99683 1374 aa38.84■■■■□ 3.81
USP42-202ENST00000404008 ITGB4P16144 1822 aa38.84■■■■□ 3.81
USP42-202ENST00000404008 HSP90AB1P08238 724 aaKnown RBP38.83■■■■□ 3.81
USP42-202ENST00000404008 KDM6AO15550 1401 aaPredicted RBP38.83■■■■□ 3.81
USP42-202ENST00000404008 KAT6BQ8WYB5 2073 aa38.81■■■■□ 3.8
USP42-202ENST00000404008 NFE2L2Q16236 605 aa38.81■■■■□ 3.8
USP42-202ENST00000404008 DCAF5Q96JK2 942 aa38.81■■■■□ 3.8
USP42-202ENST00000404008 TNS1Q9HBL0 1735 aaKnown RBP38.81■■■■□ 3.8
USP42-202ENST00000404008 GNAT3A8MTJ3 354 aa38.79■■■■□ 3.8
USP42-202ENST00000404008 MPRIPQ6WCQ1 1025 aa38.79■■■■□ 3.8
USP42-202ENST00000404008 ACSBG1Q96GR2 724 aa38.78■■■■□ 3.8
USP42-202ENST00000404008 TMPOP42166 694 aaKnown RBP38.75■■■■□ 3.79
USP42-202ENST00000404008 BTAF1O14981 1849 aa38.75■■■■□ 3.79
USP42-202ENST00000404008 TRIM37O94972 964 aa38.74■■■■□ 3.79
USP42-202ENST00000404008 KCNQ2O43526 872 aa38.73■■■■□ 3.79
USP42-202ENST00000404008 PRIM1P49642 420 aaKnown RBP38.72■■■■□ 3.79
USP42-202ENST00000404008 LGR6Q9HBX8 967 aa38.72■■■■□ 3.79
USP42-202ENST00000404008 MRC1P22897 1456 aa38.71■■■■□ 3.79
USP42-202ENST00000404008 APAF1O14727 1248 aa38.71■■■■□ 3.79
USP42-202ENST00000404008 RNMTO43148 476 aaKnown RBP38.71■■■■□ 3.79
USP42-202ENST00000404008 BCL11BQ9C0K0 894 aaPredicted RBP38.71■■■■□ 3.79
USP42-202ENST00000404008 ERVV-2B6SEH9 535 aa38.7■■■■□ 3.79
USP42-202ENST00000404008 HTATSF1O43719 755 aaKnown RBP38.7■■■■□ 3.79
USP42-202ENST00000404008 PTF1AQ7RTS3 328 aa38.7■■■■□ 3.79
USP42-202ENST00000404008 RRP7AQ9Y3A4 280 aaKnown RBP38.7■■■■□ 3.79
USP42-202ENST00000404008 SIPA1L3O60292 1781 aaPredicted RBP38.7■■■■□ 3.79
USP42-202ENST00000404008 RIPK4P57078 832 aa38.7■■■■□ 3.78
USP42-202ENST00000404008 SYTL4Q96C24 671 aaPredicted RBP38.7■■■■□ 3.78
USP42-202ENST00000404008 IL17REQ8NFR9 667 aa38.69■■■■□ 3.78
USP42-202ENST00000404008 RTF1Q92541 710 aaKnown RBP38.68■■■■□ 3.78
USP42-202ENST00000404008 CEMIPQ8WUJ3 1361 aa38.68■■■■□ 3.78
USP42-202ENST00000404008 NEUROD2Q15784 382 aa38.66■■■■□ 3.78
USP42-202ENST00000404008 UPF1Q92900 1129 aaKnown RBP eCLIP38.66■■■■□ 3.78
USP42-202ENST00000404008 MCM10Q7L590 875 aa38.65■■■■□ 3.78
USP42-202ENST00000404008 CCDC125Q86Z20 511 aa38.64■■■■□ 3.78
USP42-202ENST00000404008 TMOD3Q9NYL9 352 aa38.64■■■■□ 3.78
USP42-202ENST00000404008 CABP4P57796 275 aa38.63■■■■□ 3.77
USP42-202ENST00000404008 DCTN1Q14203 1278 aa38.63■■■■□ 3.77
USP42-202ENST00000404008 LMOD3Q0VAK6 560 aa38.62■■■■□ 3.77
USP42-202ENST00000404008 PIGBQ92521 554 aa38.61■■■■□ 3.77
USP42-202ENST00000404008 SLC52A2Q9HAB3 445 aa38.61■■■■□ 3.77
USP42-202ENST00000404008 TRIM35Q9UPQ4 493 aa38.61■■■■□ 3.77
USP42-202ENST00000404008 NFATC2IPQ8NCF5 419 aa38.6■■■■□ 3.77
USP42-202ENST00000404008 RGPD3A6NKT7 1758 aaPredicted RBP38.6■■■■□ 3.77
USP42-202ENST00000404008 RGPD4Q7Z3J3 1758 aa38.6■■■■□ 3.77
Retrieved 100 of 20,778 RNA–protein pairs in 120.2 ms