RNA–Protein interactions for RNA: ENST00000399976.6

USP16-204, Transcript of ubiquitin specific peptidase 16, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP16, Length 2,963 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP16-204ENST00000399976 CC2D1BQ5T0F9 858 aaKnown RBP10.12□□□□□ -0.79
USP16-204ENST00000399976 NUDCQ9Y266 331 aa10.12□□□□□ -0.79
USP16-204ENST00000399976 PCDH11XQ9BZA7 1347 aa10.12□□□□□ -0.79
USP16-204ENST00000399976 PCDH11YQ9BZA8 1340 aa10.12□□□□□ -0.79
USP16-204ENST00000399976 KDM3BQ7LBC6 1761 aa10.11□□□□□ -0.79
USP16-204ENST00000399976 EYA1Q99502 592 aa10.11□□□□□ -0.79
USP16-204ENST00000399976 C5P01031 1676 aa10.11□□□□□ -0.79
USP16-204ENST00000399976 CCER2I3L3R5 266 aa10.11□□□□□ -0.79
USP16-204ENST00000399976 FCHSD2O94868 740 aa10.11□□□□□ -0.79
USP16-204ENST00000399976 NBPF6Q5VWK0 638 aa10.11□□□□□ -0.79
USP16-204ENST00000399976 NBPF4Q96M43 638 aa10.11□□□□□ -0.79
USP16-204ENST00000399976 NUP188Q5SRE5 1749 aa10.1□□□□□ -0.79
USP16-204ENST00000399976 NGEFQ8N5V2 710 aa10.1□□□□□ -0.79
USP16-204ENST00000399976 COL24A1Q17RW2 1714 aa10.1□□□□□ -0.79
USP16-204ENST00000399976 TAF1LQ8IZX4 1826 aa10.1□□□□□ -0.79
USP16-204ENST00000399976 ANP32CO43423 234 aa10.09□□□□□ -0.79
USP16-204ENST00000399976 HTATSF1O43719 755 aaKnown RBP10.09□□□□□ -0.79
USP16-204ENST00000399976 HSP90AB1P08238 724 aaKnown RBP10.09□□□□□ -0.79
USP16-204ENST00000399976 CSB-PGBD3P0DP91 1061 aa10.09□□□□□ -0.79
USP16-204ENST00000399976 TATP17735 454 aaPredicted RBP10.09□□□□□ -0.79
USP16-204ENST00000399976 SEPT12Q8IYM1 358 aa10.09□□□□□ -0.79
USP16-204ENST00000399976 COL5A3P25940 1745 aaPredicted RBP10.09□□□□□ -0.79
USP16-204ENST00000399976 SPG7Q9UQ90 795 aa10.09□□□□□ -0.79
USP16-204ENST00000399976 LAMB4A4D0S4 1761 aa10.09□□□□□ -0.79
USP16-204ENST00000399976 STRN4Q9NRL3 753 aa10.08□□□□□ -0.8
USP16-204ENST00000399976 FAM196AQ6ZSG2 479 aa10.08□□□□□ -0.8
USP16-204ENST00000399976 RAPGEF4Q8WZA2 1011 aa10.08□□□□□ -0.8
USP16-204ENST00000399976 NLRP2Q9NX02 1062 aa10.08□□□□□ -0.8
USP16-204ENST00000399976 DDB1Q16531 1140 aa10.08□□□□□ -0.8
USP16-204ENST00000399976 KRT27Q7Z3Y8 459 aa10.08□□□□□ -0.8
USP16-204ENST00000399976 RSPH6AQ9H0K4 717 aa10.07□□□□□ -0.8
USP16-204ENST00000399976 EXOC5O00471 708 aa10.07□□□□□ -0.8
USP16-204ENST00000399976 PLEKHO1Q53GL0 409 aaPredicted RBP10.06□□□□□ -0.8
USP16-204ENST00000399976 ZCRB1Q8TBF4 217 aaKnown RBP10.06□□□□□ -0.8
USP16-204ENST00000399976 FAM98CQ17RN3 349 aaKnown RBP10.06□□□□□ -0.8
USP16-204ENST00000399976 GAS2L2Q8NHY3 880 aa10.05□□□□□ -0.8
USP16-204ENST00000399976 CEMIPQ8WUJ3 1361 aa10.05□□□□□ -0.8
USP16-204ENST00000399976 PLEKHF1Q96S99 279 aa10.05□□□□□ -0.8
USP16-204ENST00000399976 TJP1Q07157 1748 aa10.05□□□□□ -0.8
USP16-204ENST00000399976 AKAP4Q5JQC9 854 aa10.05□□□□□ -0.8
USP16-204ENST00000399976 ERVV-2B6SEH9 535 aa10.04□□□□□ -0.8
USP16-204ENST00000399976 SOX12O15370 315 aa10.04□□□□□ -0.8
USP16-204ENST00000399976 FBLN1P23142 703 aa10.04□□□□□ -0.8
USP16-204ENST00000399976 IFNL2Q8IZJ0 200 aa10.04□□□□□ -0.8
USP16-204ENST00000399976 BABAM1Q9NWV8 329 aa10.04□□□□□ -0.8
USP16-204ENST00000399976 CCDC9Q9Y3X0 531 aaKnown RBP10.04□□□□□ -0.8
USP16-204ENST00000399976 MAP3K5Q99683 1374 aa10.04□□□□□ -0.8
USP16-204ENST00000399976 KDM6AO15550 1401 aaPredicted RBP10.04□□□□□ -0.8
USP16-204ENST00000399976 PHKG2P15735 406 aa10.03□□□□□ -0.8
USP16-204ENST00000399976 PDE3BQ13370 1112 aa10.03□□□□□ -0.8
USP16-204ENST00000399976 DCAF5Q96JK2 942 aa10.03□□□□□ -0.8
USP16-204ENST00000399976 BCL11BQ9C0K0 894 aaPredicted RBP10.03□□□□□ -0.8
USP16-204ENST00000399976 TNNT2P45379 298 aaPredicted RBP10.02□□□□□ -0.8
USP16-204ENST00000399976 MARCH10Q8NA82 808 aaPredicted RBP10.02□□□□□ -0.8
USP16-204ENST00000399976 PLSCR1O15162 318 aa10.02□□□□□ -0.81
USP16-204ENST00000399976 CCDC27Q2M243 656 aa10.02□□□□□ -0.81
USP16-204ENST00000399976 SULT6B1Q6IMI4 303 aa10.02□□□□□ -0.81
USP16-204ENST00000399976 ZBTB7CA1YPR0 619 aa10.02□□□□□ -0.81
USP16-204ENST00000399976 CACNA1FO60840 1977 aa10.02□□□□□ -0.81
USP16-204ENST00000399976 PPM1GO15355 546 aaPredicted RBP10.01□□□□□ -0.81
USP16-204ENST00000399976 LMOD3Q0VAK6 560 aa10.01□□□□□ -0.81
USP16-204ENST00000399976 PNISRQ8TF01 805 aaKnown RBP10.01□□□□□ -0.81
USP16-204ENST00000399976 CASZ1Q86V15 1759 aa10.01□□□□□ -0.81
USP16-204ENST00000399976 KCPQ6ZWJ8 1503 aa10□□□□□ -0.81
USP16-204ENST00000399976 CYP27B1O15528 508 aa10□□□□□ -0.81
USP16-204ENST00000399976 RUNDC1Q96C34 613 aa10□□□□□ -0.81
USP16-204ENST00000399976 TUBGCP6Q96RT7 1819 aa10□□□□□ -0.81
USP16-204ENST00000399976 LTV1Q96GA3 475 aaPredicted RBP10□□□□□ -0.81
USP16-204ENST00000399976 SOCS7O14512 581 aa9.99□□□□□ -0.81
USP16-204ENST00000399976 NEFMP07197 916 aa9.99□□□□□ -0.81
USP16-204ENST00000399976 UBR3Q6ZT12 1888 aa9.99□□□□□ -0.81
USP16-204ENST00000399976 WDR43Q15061 677 aaKnown RBP eCLIP9.99□□□□□ -0.81
USP16-204ENST00000399976 NFE2L2Q16236 605 aa9.99□□□□□ -0.81
USP16-204ENST00000399976 C1orf141Q5JVX7 400 aa9.99□□□□□ -0.81
USP16-204ENST00000399976 SMARCC1Q92922 1105 aaPredicted RBP9.99□□□□□ -0.81
USP16-204ENST00000399976 SOS1Q07889 1333 aaPredicted RBP9.98□□□□□ -0.81
USP16-204ENST00000399976 C4BP0C0L5 1744 aa9.98□□□□□ -0.81
USP16-204ENST00000399976 U2AF1L5P0DN76 240 aaPredicted RBP9.98□□□□□ -0.81
USP16-204ENST00000399976 U2AF1Q01081 240 aaKnown RBP eCLIP9.98□□□□□ -0.81
USP16-204ENST00000399976 AEBP1Q8IUX7 1158 aa9.98□□□□□ -0.81
USP16-204ENST00000399976 PRKAR2BP31323 418 aa9.98□□□□□ -0.81
USP16-204ENST00000399976 GNAT3A8MTJ3 354 aa9.97□□□□□ -0.81
USP16-204ENST00000399976 SLC27A3Q5K4L6 730 aa9.97□□□□□ -0.81
USP16-204ENST00000399976 ILDR2Q71H61 639 aa9.97□□□□□ -0.81
USP16-204ENST00000399976 UPF1Q92900 1129 aaKnown RBP eCLIP9.97□□□□□ -0.81
USP16-204ENST00000399976 IL16Q14005 1332 aa9.97□□□□□ -0.81
USP16-204ENST00000399976 LRP5O75197 1615 aa9.97□□□□□ -0.81
USP16-204ENST00000399976 DIEXFQ68CQ4 756 aaKnown RBP9.97□□□□□ -0.81
USP16-204ENST00000399976 ZNF530Q6P9A1 599 aaPredicted RBP9.97□□□□□ -0.81
USP16-204ENST00000399976 USHBP1Q8N6Y0 703 aa9.97□□□□□ -0.81
USP16-204ENST00000399976 BCORQ6W2J9 1755 aa9.97□□□□□ -0.81
USP16-204ENST00000399976 MTHFSDQ2M296 383 aaKnown RBP9.96□□□□□ -0.81
USP16-204ENST00000399976 MAPK8IP3Q9UPT6 1336 aa9.96□□□□□ -0.81
USP16-204ENST00000399976 U2SURPO15042 1029 aaKnown RBP9.96□□□□□ -0.82
USP16-204ENST00000399976 CALD1Q05682 793 aaKnown RBP9.96□□□□□ -0.82
USP16-204ENST00000399976 VSIG10Q8N0Z9 540 aa9.96□□□□□ -0.82
USP16-204ENST00000399976 RNMTO43148 476 aaKnown RBP9.96□□□□□ -0.82
USP16-204ENST00000399976 PLEKHG5O94827 1062 aa9.96□□□□□ -0.82
USP16-204ENST00000399976 USP35Q9P2H5 1018 aa9.96□□□□□ -0.82
USP16-204ENST00000399976 RGL2O15211 777 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms