RNA–Protein interactions for RNA: ENST00000397397.6

TSPAN4-203, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN4, Length 1,423 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-203ENST00000397397 CCDC146Q8IYE0 955 aa31.32■■■□□ 2.61
TSPAN4-203ENST00000397397 PARP4Q9UKK3 1724 aaKnown RBP31.32■■■□□ 2.6
TSPAN4-203ENST00000397397 FAM98CQ17RN3 349 aaKnown RBP31.32■■■□□ 2.6
TSPAN4-203ENST00000397397 DISP2A7MBM2 1401 aa31.31■■■□□ 2.6
TSPAN4-203ENST00000397397 NEFMP07197 916 aa31.3■■■□□ 2.6
TSPAN4-203ENST00000397397 PLEKHF1Q96S99 279 aa31.3■■■□□ 2.6
TSPAN4-203ENST00000397397 CDCA7Q9BWT1 371 aaPredicted RBP31.3■■■□□ 2.6
TSPAN4-203ENST00000397397 UPF1Q92900 1129 aaKnown RBP eCLIP31.28■■■□□ 2.62e-9■■■■■ 55.1
TSPAN4-203ENST00000397397 RUNDC1Q96C34 613 aa31.28■■■□□ 2.6
TSPAN4-203ENST00000397397 MAPK8IP3Q9UPT6 1336 aa31.28■■■□□ 2.6
TSPAN4-203ENST00000397397 OVOS2A0A0G2JMS6 1433 aa31.28■■■□□ 2.6
TSPAN4-203ENST00000397397 PHACTR3Q96KR7 559 aa31.26■■■□□ 2.6
TSPAN4-203ENST00000397397 A0A0G2JS52 829 aa31.25■■■□□ 2.59
TSPAN4-203ENST00000397397 MYT1Q01538 1121 aa31.25■■■□□ 2.59
TSPAN4-203ENST00000397397 PLEKHO1Q53GL0 409 aaPredicted RBP31.25■■■□□ 2.59
TSPAN4-203ENST00000397397 PLEKHG2Q9H7P9 1386 aa31.24■■■□□ 2.59
TSPAN4-203ENST00000397397 PKD1L3Q7Z443 1732 aa31.23■■■□□ 2.59
TSPAN4-203ENST00000397397 THSD7AQ9UPZ6 1657 aa31.23■■■□□ 2.59
TSPAN4-203ENST00000397397 AMOTQ4VCS5 1084 aa31.23■■■□□ 2.59
TSPAN4-203ENST00000397397 SPG7Q9UQ90 795 aa31.23■■■□□ 2.59
TSPAN4-203ENST00000397397 ONECUT3O60422 494 aaPredicted RBP31.22■■■□□ 2.59
TSPAN4-203ENST00000397397 SEPT12Q8IYM1 358 aa31.22■■■□□ 2.59
TSPAN4-203ENST00000397397 ZCRB1Q8TBF4 217 aaKnown RBP31.22■■■□□ 2.59
TSPAN4-203ENST00000397397 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.21■■■□□ 2.59
TSPAN4-203ENST00000397397 BRWD3Q6RI45 1802 aa31.2■■■□□ 2.59
TSPAN4-203ENST00000397397 EXOC5O00471 708 aa31.2■■■□□ 2.59
TSPAN4-203ENST00000397397 MTHFSDQ2M296 383 aaKnown RBP31.2■■■□□ 2.59
TSPAN4-203ENST00000397397 LRRC37A3O60309 1634 aa31.2■■■□□ 2.58
TSPAN4-203ENST00000397397 DDB1Q16531 1140 aa31.19■■■□□ 2.58
TSPAN4-203ENST00000397397 GAS2L2Q8NHY3 880 aa31.18■■■□□ 2.58
TSPAN4-203ENST00000397397 TNS2Q63HR2 1409 aa31.17■■■□□ 2.58
TSPAN4-203ENST00000397397 ZNF530Q6P9A1 599 aaPredicted RBP31.17■■■□□ 2.58
TSPAN4-203ENST00000397397 SHANK3Q9BYB0 1731 aa31.17■■■□□ 2.58
TSPAN4-203ENST00000397397 APAF1O14727 1248 aa31.16■■■□□ 2.58
TSPAN4-203ENST00000397397 NFE2L2Q16236 605 aa31.15■■■□□ 2.58
TSPAN4-203ENST00000397397 SENP3-EIF4A1A0A087X0R7 540 aa31.15■■■□□ 2.58
TSPAN4-203ENST00000397397 PCDH11XQ9BZA7 1347 aa31.14■■■□□ 2.58
TSPAN4-203ENST00000397397 PCDH11YQ9BZA8 1340 aa31.14■■■□□ 2.58
TSPAN4-203ENST00000397397 TMPOP42166 694 aaKnown RBP31.14■■■□□ 2.58
TSPAN4-203ENST00000397397 DDX54Q8TDD1 881 aaKnown RBP31.14■■■□□ 2.58
TSPAN4-203ENST00000397397 RRP7AQ9Y3A4 280 aaKnown RBP31.14■■■□□ 2.58
TSPAN4-203ENST00000397397 C1orf141Q5JVX7 400 aa31.13■■■□□ 2.57
TSPAN4-203ENST00000397397 NEUROD2Q15784 382 aa31.12■■■□□ 2.57
TSPAN4-203ENST00000397397 DLG5Q8TDM6 1919 aa31.12■■■□□ 2.57
TSPAN4-203ENST00000397397 CYP27B1O15528 508 aa31.11■■■□□ 2.57
TSPAN4-203ENST00000397397 IFNL2Q8IZJ0 200 aa31.11■■■□□ 2.57
TSPAN4-203ENST00000397397 RIPK4P57078 832 aa31.1■■■□□ 2.57
TSPAN4-203ENST00000397397 PDE3BQ13370 1112 aa31.1■■■□□ 2.57
TSPAN4-203ENST00000397397 AKAP4Q5JQC9 854 aa31.1■■■□□ 2.57
TSPAN4-203ENST00000397397 PHKG2P15735 406 aa31.09■■■□□ 2.57
TSPAN4-203ENST00000397397 KRT27Q7Z3Y8 459 aa31.08■■■□□ 2.57
TSPAN4-203ENST00000397397 MAP3K5Q99683 1374 aa31.07■■■□□ 2.56
TSPAN4-203ENST00000397397 GNAT3A8MTJ3 354 aa31.07■■■□□ 2.56
TSPAN4-203ENST00000397397 MARCH10Q8NA82 808 aaPredicted RBP31.06■■■□□ 2.56
TSPAN4-203ENST00000397397 SALL2Q9Y467 1007 aaPredicted RBP31.06■■■□□ 2.56
TSPAN4-203ENST00000397397 HSP90AB1P08238 724 aaKnown RBP31.04■■■□□ 2.56
TSPAN4-203ENST00000397397 EP400Q96L91 3159 aa31.03■■■□□ 2.56
TSPAN4-203ENST00000397397 HNRNPUQ00839 825 aaKnown RBP eCLIP31.03■■■□□ 2.56
TSPAN4-203ENST00000397397 RTF1Q92541 710 aaKnown RBP31.03■■■□□ 2.56
TSPAN4-203ENST00000397397 LMOD3Q0VAK6 560 aa31.02■■■□□ 2.56
TSPAN4-203ENST00000397397 MPRIPQ6WCQ1 1025 aa31.02■■■□□ 2.56
TSPAN4-203ENST00000397397 HTATSF1O43719 755 aaKnown RBP31.01■■■□□ 2.55
TSPAN4-203ENST00000397397 NKX1-1Q15270 411 aaPredicted RBP31.01■■■□□ 2.55
TSPAN4-203ENST00000397397 VIRMAQ69YN4 1812 aaKnown RBP31■■■□□ 2.55
TSPAN4-203ENST00000397397 TRIM35Q9UPQ4 493 aa31■■■□□ 2.55
TSPAN4-203ENST00000397397 NGEFQ8N5V2 710 aa30.99■■■□□ 2.55
TSPAN4-203ENST00000397397 DCTN1Q14203 1278 aa30.98■■■□□ 2.55
TSPAN4-203ENST00000397397 NCBP3Q53F19 620 aaKnown RBP30.98■■■□□ 2.55
TSPAN4-203ENST00000397397 FAM182BQ5T319 152 aa30.98■■■□□ 2.55
TSPAN4-203ENST00000397397 MCM10Q7L590 875 aa30.98■■■□□ 2.55
TSPAN4-203ENST00000397397 DCAF5Q96JK2 942 aa30.98■■■□□ 2.55
TSPAN4-203ENST00000397397 SCN11AQ9UI33 1791 aa30.98■■■□□ 2.55
TSPAN4-203ENST00000397397 LGR6Q9HBX8 967 aa30.98■■■□□ 2.55
TSPAN4-203ENST00000397397 KDM6AO15550 1401 aaPredicted RBP30.97■■■□□ 2.55
TSPAN4-203ENST00000397397 RNMTO43148 476 aaKnown RBP30.97■■■□□ 2.55
TSPAN4-203ENST00000397397 CCDC27Q2M243 656 aa30.97■■■□□ 2.55
TSPAN4-203ENST00000397397 IL17REQ8NFR9 667 aa30.97■■■□□ 2.55
TSPAN4-203ENST00000397397 YTHDC1Q96MU7 727 aaKnown RBP30.96■■■□□ 2.55
TSPAN4-203ENST00000397397 ADAMTS7Q9UKP4 1686 aa30.95■■■□□ 2.54
TSPAN4-203ENST00000397397 THUMPD2Q9BTF0 503 aaKnown RBP30.94■■■□□ 2.54
TSPAN4-203ENST00000397397 WWC1Q8IX03 1113 aa30.93■■■□□ 2.54
TSPAN4-203ENST00000397397 TOGARAM1Q9Y4F4 1720 aa30.93■■■□□ 2.54
TSPAN4-203ENST00000397397 DOT1LQ8TEK3 1739 aa30.92■■■□□ 2.54
TSPAN4-203ENST00000397397 KAT6BQ8WYB5 2073 aa30.91■■■□□ 2.54
TSPAN4-203ENST00000397397 CEMIPQ8WUJ3 1361 aa30.91■■■□□ 2.54
TSPAN4-203ENST00000397397 CCDC125Q86Z20 511 aa30.9■■■□□ 2.54
TSPAN4-203ENST00000397397 ERVV-2B6SEH9 535 aa30.9■■■□□ 2.54
TSPAN4-203ENST00000397397 ACSBG1Q96GR2 724 aa30.9■■■□□ 2.54
TSPAN4-203ENST00000397397 TEFQ10587 303 aa30.89■■■□□ 2.53
TSPAN4-203ENST00000397397 FAM196AQ6ZSG2 479 aa30.89■■■□□ 2.53
TSPAN4-203ENST00000397397 BCL9O00512 1426 aa30.89■■■□□ 2.53
TSPAN4-203ENST00000397397 CABP4P57796 275 aa30.88■■■□□ 2.53
TSPAN4-203ENST00000397397 ITGB4P16144 1822 aa30.87■■■□□ 2.53
TSPAN4-203ENST00000397397 CALD1Q05682 793 aaKnown RBP30.86■■■□□ 2.53
TSPAN4-203ENST00000397397 SYTL4Q96C24 671 aaPredicted RBP30.86■■■□□ 2.53
TSPAN4-203ENST00000397397 SLC52A2Q9HAB3 445 aa30.86■■■□□ 2.53
TSPAN4-203ENST00000397397 SBF2Q86WG5 1849 aa30.85■■■□□ 2.53
TSPAN4-203ENST00000397397 MRC1P22897 1456 aa30.85■■■□□ 2.53
TSPAN4-203ENST00000397397 PRIM1P49642 420 aaKnown RBP30.85■■■□□ 2.53
TSPAN4-203ENST00000397397 WDR63Q8IWG1 891 aa30.85■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms