RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CCDC184Q52MB2 194 aa13.87□□□□□ -0.19
SYNPO-202ENST00000394243 ATF7IPQ6VMQ6 1270 aa13.87□□□□□ -0.19
SYNPO-202ENST00000394243 ERC1Q8IUD2 1116 aa13.87□□□□□ -0.19
SYNPO-202ENST00000394243 IMMTQ16891 758 aaKnown RBP13.87□□□□□ -0.19
SYNPO-202ENST00000394243 CCDC91Q7Z6B0 441 aa13.87□□□□□ -0.19
SYNPO-202ENST00000394243 CWC27Q6UX04 472 aaKnown RBP13.87□□□□□ -0.19
SYNPO-202ENST00000394243 GTPBP4Q9BZE4 634 aaKnown RBP13.86□□□□□ -0.19
SYNPO-202ENST00000394243 ZNF397Q8NF99 534 aaPredicted RBP13.86□□□□□ -0.19
SYNPO-202ENST00000394243 CCDC175P0C221 793 aa13.86□□□□□ -0.19
SYNPO-202ENST00000394243 CASTP20810 708 aaKnown RBP13.86□□□□□ -0.19
SYNPO-202ENST00000394243 PAXBP1Q9Y5B6 917 aa13.86□□□□□ -0.19
SYNPO-202ENST00000394243 SNW1Q13573 536 aaKnown RBP13.85□□□□□ -0.19
SYNPO-202ENST00000394243 SPA17Q15506 151 aa13.85□□□□□ -0.19
SYNPO-202ENST00000394243 CKAP2LQ8IYA6 745 aa13.85□□□□□ -0.19
SYNPO-202ENST00000394243 ZNF526Q8TF50 670 aaPredicted RBP13.85□□□□□ -0.19
SYNPO-202ENST00000394243 GOPCQ9HD26 462 aa13.85□□□□□ -0.19
SYNPO-202ENST00000394243 CCDC83Q8IWF9 413 aa13.85□□□□□ -0.19
SYNPO-202ENST00000394243 RBM27Q9P2N5 1060 aaKnown RBP13.85□□□□□ -0.19
SYNPO-202ENST00000394243 MIA2Q96PC5 1412 aa13.85□□□□□ -0.19
SYNPO-202ENST00000394243 NEMFO60524 1076 aa13.85□□□□□ -0.19
SYNPO-202ENST00000394243 LUZP1Q86V48 1076 aa13.85□□□□□ -0.19
SYNPO-202ENST00000394243 POTEB2H3BUK9 544 aa13.85□□□□□ -0.19
SYNPO-202ENST00000394243 IKQ13123 557 aaPredicted RBP13.85□□□□□ -0.19
SYNPO-202ENST00000394243 RSPH14Q9UHP6 348 aa13.84□□□□□ -0.19
SYNPO-202ENST00000394243 CCDC69A6NI79 296 aa13.84□□□□□ -0.19
SYNPO-202ENST00000394243 ZNF830Q96NB3 372 aaPredicted RBP13.84□□□□□ -0.19
SYNPO-202ENST00000394243 SRCIN1Q9C0H9 1055 aa13.84□□□□□ -0.19
SYNPO-202ENST00000394243 CEP63Q96MT8 703 aa13.83□□□□□ -0.19
SYNPO-202ENST00000394243 SRRTQ9BXP5 876 aaKnown RBP13.83□□□□□ -0.19
SYNPO-202ENST00000394243 SMC1AQ14683 1233 aaKnown RBP13.83□□□□□ -0.2
SYNPO-202ENST00000394243 IGSF3O75054 1194 aa13.83□□□□□ -0.2
SYNPO-202ENST00000394243 SLC4A2P04920 1241 aa13.83□□□□□ -0.2
SYNPO-202ENST00000394243 PDIA4P13667 645 aaKnown RBP13.83□□□□□ -0.2
SYNPO-202ENST00000394243 NOL7Q9UMY1 257 aaKnown RBP13.83□□□□□ -0.2
SYNPO-202ENST00000394243 DNA2P51530 1060 aa13.83□□□□□ -0.2
SYNPO-202ENST00000394243 UBE4AQ14139 1066 aa13.83□□□□□ -0.2
SYNPO-202ENST00000394243 XRCC6P12956 609 aaKnown RBP eCLIP13.83□□□□□ -0.2
SYNPO-202ENST00000394243 NUP133Q8WUM0 1156 aa13.83□□□□□ -0.2
SYNPO-202ENST00000394243 EVA1CP58658 441 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 CCDC178Q5BJE1 867 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 SPECC1Q5M775 1068 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 KLHL10Q6JEL2 608 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 IVLP07476 585 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 PRKAR2BP31323 418 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 TMC6Q7Z403 805 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 CCDC94Q9BW85 323 aaPredicted RBP13.82□□□□□ -0.2
SYNPO-202ENST00000394243 PANK2Q9BZ23 570 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 ZSWIM4Q9H7M6 989 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 GDPD2Q9HCC8 539 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 GSDMDP57764 484 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 TTC39AQ5SRH9 613 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 ATP2C2O75185 946 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 PAFAH1B1P43034 410 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 SIL1Q9H173 461 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 TMEM132AQ24JP5 1023 aa13.82□□□□□ -0.2
SYNPO-202ENST00000394243 NOLC1Q14978 699 aaKnown RBP eCLIP13.81□□□□□ -0.2
SYNPO-202ENST00000394243 ZSCAN23Q3MJ62 389 aa13.81□□□□□ -0.2
SYNPO-202ENST00000394243 CPLX3Q8WVH0 158 aa13.81□□□□□ -0.2
SYNPO-202ENST00000394243 ERCC6Q03468 1493 aa13.81□□□□□ -0.2
SYNPO-202ENST00000394243 CCT4P50991 539 aaKnown RBP13.81□□□□□ -0.2
SYNPO-202ENST00000394243 SCAND2PQ9GZW5 306 aaPredicted RBP13.81□□□□□ -0.2
SYNPO-202ENST00000394243 CDKL5O76039 1030 aa13.81□□□□□ -0.2
SYNPO-202ENST00000394243 MICALL1Q8N3F8 863 aa13.81□□□□□ -0.2
SYNPO-202ENST00000394243 GCOM1H8Y6P7 765 aaPredicted RBP13.81□□□□□ -0.2
SYNPO-202ENST00000394243 MYZAPP0CAP1 466 aa13.81□□□□□ -0.2
SYNPO-202ENST00000394243 SLC3A2P08195 630 aaKnown RBP13.8□□□□□ -0.2
SYNPO-202ENST00000394243 BAG4O95429 457 aaKnown RBP13.8□□□□□ -0.2
SYNPO-202ENST00000394243 HLTFQ14527 1009 aaKnown RBP eCLIP13.8□□□□□ -0.2
SYNPO-202ENST00000394243 TTC31Q49AM3 519 aaPredicted RBP13.8□□□□□ -0.2
SYNPO-202ENST00000394243 PAF1Q8N7H5 531 aa13.8□□□□□ -0.2
SYNPO-202ENST00000394243 SYTL4Q96C24 671 aaPredicted RBP13.8□□□□□ -0.2
SYNPO-202ENST00000394243 CABP2Q9NPB3 220 aa13.8□□□□□ -0.2
SYNPO-202ENST00000394243 WDR63Q8IWG1 891 aa13.8□□□□□ -0.2
SYNPO-202ENST00000394243 C11orf95C9JLR9 678 aaPredicted RBP13.8□□□□□ -0.2
SYNPO-202ENST00000394243 SSR1P43307 286 aaKnown RBP13.8□□□□□ -0.2
SYNPO-202ENST00000394243 SSBP05455 408 aaKnown RBP eCLIP13.8□□□□□ -0.2
SYNPO-202ENST00000394243 CCDC158Q5M9N0 1113 aa13.8□□□□□ -0.2
SYNPO-202ENST00000394243 LIG1P18858 919 aa13.79□□□□□ -0.2
SYNPO-202ENST00000394243 NUP88Q99567 741 aaPredicted RBP13.79□□□□□ -0.2
SYNPO-202ENST00000394243 HSPA4P34932 840 aa13.79□□□□□ -0.2
SYNPO-202ENST00000394243 UVSSAQ2YD98 709 aa13.79□□□□□ -0.2
SYNPO-202ENST00000394243 GIGYF2Q6Y7W6 1299 aaKnown RBP13.79□□□□□ -0.2
SYNPO-202ENST00000394243 SPECC1LQ69YQ0 1117 aa13.79□□□□□ -0.2
SYNPO-202ENST00000394243 MAATS1Q7Z4T9 603 aa13.79□□□□□ -0.2
SYNPO-202ENST00000394243 KRT32Q14532 448 aa13.79□□□□□ -0.2
SYNPO-202ENST00000394243 ZNF428Q96B54 188 aa13.79□□□□□ -0.2
SYNPO-202ENST00000394243 C20orf194Q5TEA3 1177 aa13.78□□□□□ -0.2
SYNPO-202ENST00000394243 IL1RAPL2Q9NP60 686 aa13.78□□□□□ -0.2
SYNPO-202ENST00000394243 CTAGE5O15320 804 aa13.78□□□□□ -0.2
SYNPO-202ENST00000394243 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.78□□□□□ -0.2
SYNPO-202ENST00000394243 ARFGAP3Q9NP61 516 aa13.78□□□□□ -0.2
SYNPO-202ENST00000394243 KLHL40Q2TBA0 621 aa13.78□□□□□ -0.2
SYNPO-202ENST00000394243 AACSQ86V21 672 aa13.78□□□□□ -0.2
SYNPO-202ENST00000394243 C10orf67Q8IYJ2 551 aa13.78□□□□□ -0.2
SYNPO-202ENST00000394243 GSTTP1A0A1W2PQM5 241 aa13.78□□□□□ -0.2
SYNPO-202ENST00000394243 MCM6Q14566 821 aa13.78□□□□□ -0.2
SYNPO-202ENST00000394243 TMEM57Q8N5G2 664 aa13.78□□□□□ -0.2
SYNPO-202ENST00000394243 GNG11P61952 73 aa13.78□□□□□ -0.2
SYNPO-202ENST00000394243 CCDC57Q2TAC2 916 aa13.77□□□□□ -0.2
SYNPO-202ENST00000394243 USO1O60763 962 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms