RNA–Protein interactions for RNA: ENST00000361138.6

SMC5-201, Transcript of structural maintenance of chromosomes 5, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC5, Length 5,980 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-201ENST00000361138 NEUROD6Q96NK8 337 aa16.5■□□□□ 0.23
SMC5-201ENST00000361138 TMCO3Q6UWJ1 677 aa16.5■□□□□ 0.23
SMC5-201ENST00000361138 CDK19Q9BWU1 502 aa16.5■□□□□ 0.23
SMC5-201ENST00000361138 UPF3BQ9BZI7 483 aaKnown RBP16.5■□□□□ 0.23
SMC5-201ENST00000361138 CALCOCO1Q9P1Z2 691 aa16.5■□□□□ 0.23
SMC5-201ENST00000361138 CLIP2Q9UDT6 1046 aa16.5■□□□□ 0.23
SMC5-201ENST00000361138 ASXL1Q8IXJ9 1541 aa16.5■□□□□ 0.23
SMC5-201ENST00000361138 MARCH6O60337 910 aa16.5■□□□□ 0.23
SMC5-201ENST00000361138 FILIP1LQ4L180 1135 aa16.5■□□□□ 0.23
SMC5-201ENST00000361138 CCDC83Q8IWF9 413 aa16.5■□□□□ 0.23
SMC5-201ENST00000361138 SMC5Q8IY18 1101 aa16.5■□□□□ 0.23
SMC5-201ENST00000361138 CDR1P51861 262 aa16.5■□□□□ 0.23
SMC5-201ENST00000361138 DHX16O60231 1041 aaKnown RBP16.49■□□□□ 0.23
SMC5-201ENST00000361138 PDE4CQ08493 712 aa16.49■□□□□ 0.23
SMC5-201ENST00000361138 WASHC4Q2M389 1173 aa16.49■□□□□ 0.23
SMC5-201ENST00000361138 BLOC1S2Q6QNY1 142 aa16.49■□□□□ 0.23
SMC5-201ENST00000361138 KIF14Q15058 1648 aa16.49■□□□□ 0.23
SMC5-201ENST00000361138 UBXN4Q92575 508 aa16.49■□□□□ 0.23
SMC5-201ENST00000361138 FAM177A1Q8N128 213 aaPredicted RBP16.49■□□□□ 0.23
SMC5-201ENST00000361138 KIF18AQ8NI77 898 aa16.49■□□□□ 0.23
SMC5-201ENST00000361138 AIMP1Q12904 312 aaKnown RBP16.49■□□□□ 0.23
SMC5-201ENST00000361138 C16orf45Q96MC5 204 aaPredicted RBP16.49■□□□□ 0.23
SMC5-201ENST00000361138 CABP1Q9NZU7 370 aa16.49■□□□□ 0.23
SMC5-201ENST00000361138 NAP1L1P55209 391 aaKnown RBP16.48■□□□□ 0.23
SMC5-201ENST00000361138 SULT6B1Q6IMI4 303 aa16.48■□□□□ 0.23
SMC5-201ENST00000361138 CEP89Q96ST8 783 aa16.48■□□□□ 0.23
SMC5-201ENST00000361138 CCDC94Q9BW85 323 aaPredicted RBP16.48■□□□□ 0.23
SMC5-201ENST00000361138 TTC22Q5TAA0 569 aa16.48■□□□□ 0.23
SMC5-201ENST00000361138 ARHGEF11O15085 1522 aa16.48■□□□□ 0.23
SMC5-201ENST00000361138 KIAA0586Q9BVV6 1533 aa16.48■□□□□ 0.23
SMC5-201ENST00000361138 NOLC1Q14978 699 aaKnown RBP eCLIP16.48■□□□□ 0.23
SMC5-201ENST00000361138 FAM135AQ9P2D6 1515 aa16.47■□□□□ 0.23
SMC5-201ENST00000361138 GDPD2Q9HCC8 539 aa16.47■□□□□ 0.23
SMC5-201ENST00000361138 MAGI1Q96QZ7 1491 aaPredicted RBP16.47■□□□□ 0.23
SMC5-201ENST00000361138 SMTNL1A8MU46 457 aa16.47■□□□□ 0.23
SMC5-201ENST00000361138 IL1RAPL2Q9NP60 686 aa16.47■□□□□ 0.23
SMC5-201ENST00000361138 ATAD2Q6PL18 1390 aa16.47■□□□□ 0.23
SMC5-201ENST00000361138 AXDND1Q5T1B0 1012 aaPredicted RBP16.47■□□□□ 0.23
SMC5-201ENST00000361138 NUTM1Q86Y26 1132 aa16.47■□□□□ 0.23
SMC5-201ENST00000361138 DACH1Q9UI36 760 aa16.47■□□□□ 0.23
SMC5-201ENST00000361138 EXOC6BQ9Y2D4 811 aa16.47■□□□□ 0.23
SMC5-201ENST00000361138 GRIN2AQ12879 1464 aa16.46■□□□□ 0.23
SMC5-201ENST00000361138 MAPK8IP2Q13387 824 aaPredicted RBP16.46■□□□□ 0.23
SMC5-201ENST00000361138 ZMYM4Q5VZL5 1548 aa16.46■□□□□ 0.23
SMC5-201ENST00000361138 KDM4AO75164 1064 aa16.46■□□□□ 0.23
SMC5-201ENST00000361138 JMYQ8N9B5 988 aa16.46■□□□□ 0.23
SMC5-201ENST00000361138 ZNF830Q96NB3 372 aaPredicted RBP16.46■□□□□ 0.22
SMC5-201ENST00000361138 PRIM1P49642 420 aaKnown RBP16.45■□□□□ 0.22
SMC5-201ENST00000361138 PPFIBP1Q86W92 1011 aa16.45■□□□□ 0.22
SMC5-201ENST00000361138 NEMFO60524 1076 aa16.45■□□□□ 0.22
SMC5-201ENST00000361138 GTPBP4Q9BZE4 634 aaKnown RBP16.45■□□□□ 0.22
SMC5-201ENST00000361138 SH2B1Q9NRF2 756 aaPredicted RBP16.45■□□□□ 0.22
SMC5-201ENST00000361138 THUMPD2Q9BTF0 503 aaKnown RBP16.45■□□□□ 0.22
SMC5-201ENST00000361138 SCAND2PQ9GZW5 306 aaPredicted RBP16.45■□□□□ 0.22
SMC5-201ENST00000361138 PAXBP1Q9Y5B6 917 aa16.45■□□□□ 0.22
SMC5-201ENST00000361138 TCOF1Q13428 1488 aaKnown RBP16.45■□□□□ 0.22
SMC5-201ENST00000361138 AEBP2Q6ZN18 517 aaPredicted RBP16.45■□□□□ 0.22
SMC5-201ENST00000361138 UBE2HP62256 183 aa16.44■□□□□ 0.22
SMC5-201ENST00000361138 RPGRIP1LQ68CZ1 1315 aa16.44■□□□□ 0.22
SMC5-201ENST00000361138 SKIDA1Q1XH10 827 aa16.44■□□□□ 0.22
SMC5-201ENST00000361138 HDGFL1Q5TGJ6 251 aa16.44■□□□□ 0.22
SMC5-201ENST00000361138 NOL10Q9BSC4 688 aaKnown RBP16.44■□□□□ 0.22
SMC5-201ENST00000361138 LIMCH1Q9UPQ0 1083 aa16.44■□□□□ 0.22
SMC5-201ENST00000361138 SRGAP3O43295 1099 aa16.44■□□□□ 0.22
SMC5-201ENST00000361138 BRPF1P55201 1214 aaPredicted RBP16.44■□□□□ 0.22
SMC5-201ENST00000361138 BRMS1Q9HCU9 246 aa16.44■□□□□ 0.22
SMC5-201ENST00000361138 FERMT3Q86UX7 667 aa16.43■□□□□ 0.22
SMC5-201ENST00000361138 AACSQ86V21 672 aa16.43■□□□□ 0.22
SMC5-201ENST00000361138 IL16Q14005 1332 aa16.43■□□□□ 0.22
SMC5-201ENST00000361138 SMAP1Q8IYB5 467 aaPredicted RBP16.43■□□□□ 0.22
SMC5-201ENST00000361138 ANO10Q9NW15 660 aa16.43■□□□□ 0.22
SMC5-201ENST00000361138 RAB11FIP3O75154 756 aa16.43■□□□□ 0.22
SMC5-201ENST00000361138 KRT32Q14532 448 aa16.42■□□□□ 0.22
SMC5-201ENST00000361138 CEP135Q66GS9 1140 aa16.42■□□□□ 0.22
SMC5-201ENST00000361138 STX6O43752 255 aa16.42■□□□□ 0.22
SMC5-201ENST00000361138 XBP1P17861 261 aa16.42■□□□□ 0.22
SMC5-201ENST00000361138 SFPQP23246 707 aaKnown RBP eCLIP16.42■□□□□ 0.22
SMC5-201ENST00000361138 PRPF40BQ6NWY9 871 aaKnown RBP16.42■□□□□ 0.22
SMC5-201ENST00000361138 TMX3Q96JJ7 454 aa16.42■□□□□ 0.22
SMC5-201ENST00000361138 CKAP2LQ8IYA6 745 aa16.42■□□□□ 0.22
SMC5-201ENST00000361138 CALRP27797 417 aaKnown RBP16.41■□□□□ 0.22
SMC5-201ENST00000361138 CASQ1P31415 396 aa16.41■□□□□ 0.22
SMC5-201ENST00000361138 CCDC102AQ96A19 550 aa16.41■□□□□ 0.22
SMC5-201ENST00000361138 DDX19AQ9NUU7 478 aaKnown RBP16.41■□□□□ 0.22
SMC5-201ENST00000361138 NSD2O96028 1365 aa16.41■□□□□ 0.22
SMC5-201ENST00000361138 PRAG1Q86YV5 1406 aa16.41■□□□□ 0.22
SMC5-201ENST00000361138 HCLS1P14317 486 aaPredicted RBP16.41■□□□□ 0.22
SMC5-201ENST00000361138 KIAA0754O94854 1291 aa16.41■□□□□ 0.22
SMC5-201ENST00000361138 DCTN1Q14203 1278 aa16.41■□□□□ 0.22
SMC5-201ENST00000361138 PIP4K2AP48426 406 aaPredicted RBP16.41■□□□□ 0.22
SMC5-201ENST00000361138 ZSCAN12O43309 604 aa16.4■□□□□ 0.22
SMC5-201ENST00000361138 GJB2P29033 226 aa16.4■□□□□ 0.22
SMC5-201ENST00000361138 TRMT1Q9NXH9 659 aaKnown RBP16.4■□□□□ 0.22
SMC5-201ENST00000361138 DEF6Q9H4E7 631 aa16.4■□□□□ 0.22
SMC5-201ENST00000361138 NOL7Q9UMY1 257 aaKnown RBP16.4■□□□□ 0.22
SMC5-201ENST00000361138 CTAGE5O15320 804 aa16.39■□□□□ 0.21
SMC5-201ENST00000361138 RBM25P49756 843 aaKnown RBP16.39■□□□□ 0.21
SMC5-201ENST00000361138 USP48Q86UV5 1035 aa16.39■□□□□ 0.21
SMC5-201ENST00000361138 RBM42Q9BTD8 480 aaKnown RBP16.39■□□□□ 0.21
SMC5-201ENST00000361138 MAGEC2Q9UBF1 373 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms