RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 EXOC5O00471 708 aa29.63■■■□□ 2.33
SHMT1-203ENST00000354098 BRWD3Q6RI45 1802 aa29.62■■■□□ 2.33
SHMT1-203ENST00000354098 KRT27Q7Z3Y8 459 aa29.6■■■□□ 2.33
SHMT1-203ENST00000354098 MRS2Q9HD23 443 aa29.6■■■□□ 2.33
SHMT1-203ENST00000354098 PDE3BQ13370 1112 aa29.59■■■□□ 2.33
SHMT1-203ENST00000354098 FAM182BQ5T319 152 aa29.59■■■□□ 2.33
SHMT1-203ENST00000354098 ZCRB1Q8TBF4 217 aaKnown RBP29.59■■■□□ 2.33
SHMT1-203ENST00000354098 MIER1Q8N108 512 aa29.58■■■□□ 2.33
SHMT1-203ENST00000354098 RSPH6AQ9H0K4 717 aa29.58■■■□□ 2.33
SHMT1-203ENST00000354098 TNS2Q63HR2 1409 aa29.58■■■□□ 2.33
SHMT1-203ENST00000354098 MARCH10Q8NA82 808 aaPredicted RBP29.56■■■□□ 2.32
SHMT1-203ENST00000354098 DDX54Q8TDD1 881 aaKnown RBP29.56■■■□□ 2.32
SHMT1-203ENST00000354098 PRKAR2BP31323 418 aa29.55■■■□□ 2.32
SHMT1-203ENST00000354098 FCHSD2O94868 740 aa29.54■■■□□ 2.32
SHMT1-203ENST00000354098 WDR43Q15061 677 aaKnown RBP eCLIP29.54■■■□□ 2.32
SHMT1-203ENST00000354098 ADAMTS8Q9UP79 889 aa29.53■■■□□ 2.32
SHMT1-203ENST00000354098 SHANK3Q9BYB0 1731 aa29.52■■■□□ 2.32
SHMT1-203ENST00000354098 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.52■■■□□ 2.32
SHMT1-203ENST00000354098 SPG7Q9UQ90 795 aa29.52■■■□□ 2.32
SHMT1-203ENST00000354098 PKD1L3Q7Z443 1732 aa29.52■■■□□ 2.32
SHMT1-203ENST00000354098 PLEKHO1Q53GL0 409 aaPredicted RBP29.51■■■□□ 2.31
SHMT1-203ENST00000354098 PHACTR3Q96KR7 559 aa29.51■■■□□ 2.31
SHMT1-203ENST00000354098 PNISRQ8TF01 805 aaKnown RBP29.5■■■□□ 2.31
SHMT1-203ENST00000354098 CYP27B1O15528 508 aa29.5■■■□□ 2.31
SHMT1-203ENST00000354098 AMOTQ4VCS5 1084 aa29.49■■■□□ 2.31
SHMT1-203ENST00000354098 PLEKHG2Q9H7P9 1386 aa29.48■■■□□ 2.31
SHMT1-203ENST00000354098 PCDH11XQ9BZA7 1347 aa29.48■■■□□ 2.31
SHMT1-203ENST00000354098 PCDH11YQ9BZA8 1340 aa29.48■■■□□ 2.31
SHMT1-203ENST00000354098 PLEKHF1Q96S99 279 aa29.48■■■□□ 2.31
SHMT1-203ENST00000354098 MTHFSDQ2M296 383 aaKnown RBP29.47■■■□□ 2.31
SHMT1-203ENST00000354098 CCER2I3L3R5 266 aa29.46■■■□□ 2.31
SHMT1-203ENST00000354098 ZNF530Q6P9A1 599 aaPredicted RBP29.45■■■□□ 2.31
SHMT1-203ENST00000354098 CCDC146Q8IYE0 955 aa29.44■■■□□ 2.3
SHMT1-203ENST00000354098 EP400Q96L91 3159 aa29.44■■■□□ 2.3
SHMT1-203ENST00000354098 PHKG2P15735 406 aa29.44■■■□□ 2.3
SHMT1-203ENST00000354098 IFNL2Q8IZJ0 200 aa29.43■■■□□ 2.3
SHMT1-203ENST00000354098 FAM196AQ6ZSG2 479 aa29.42■■■□□ 2.3
SHMT1-203ENST00000354098 PNNQ9H307 717 aaKnown RBP29.41■■■□□ 2.3
SHMT1-203ENST00000354098 FAM9BQ8IZU0 186 aa29.4■■■□□ 2.3
SHMT1-203ENST00000354098 C1orf141Q5JVX7 400 aa29.39■■■□□ 2.3
SHMT1-203ENST00000354098 NKX1-1Q15270 411 aaPredicted RBP29.38■■■□□ 2.29
SHMT1-203ENST00000354098 GAS2L2Q8NHY3 880 aa29.37■■■□□ 2.29
SHMT1-203ENST00000354098 ACSBG1Q96GR2 724 aa29.37■■■□□ 2.29
SHMT1-203ENST00000354098 MAPK8IP3Q9UPT6 1336 aa29.37■■■□□ 2.29
SHMT1-203ENST00000354098 BCL9O00512 1426 aa29.37■■■□□ 2.29
SHMT1-203ENST00000354098 NEFMP07197 916 aa29.37■■■□□ 2.29
SHMT1-203ENST00000354098 AKAP4Q5JQC9 854 aa29.37■■■□□ 2.29
SHMT1-203ENST00000354098 RUNDC1Q96C34 613 aa29.37■■■□□ 2.29
SHMT1-203ENST00000354098 MPRIPQ6WCQ1 1025 aa29.35■■■□□ 2.29
SHMT1-203ENST00000354098 KCNQ2O43526 872 aa29.34■■■□□ 2.29
SHMT1-203ENST00000354098 PTF1AQ7RTS3 328 aa29.34■■■□□ 2.29
SHMT1-203ENST00000354098 TRIM37O94972 964 aa29.34■■■□□ 2.29
SHMT1-203ENST00000354098 KDM6AO15550 1401 aaPredicted RBP29.32■■■□□ 2.28
SHMT1-203ENST00000354098 HSP90AB1P08238 724 aaKnown RBP29.31■■■□□ 2.28
SHMT1-203ENST00000354098 PRIM1P49642 420 aaKnown RBP29.31■■■□□ 2.28
SHMT1-203ENST00000354098 NFE2L2Q16236 605 aa29.31■■■□□ 2.28
SHMT1-203ENST00000354098 DCAF5Q96JK2 942 aa29.31■■■□□ 2.28
SHMT1-203ENST00000354098 LGR6Q9HBX8 967 aa29.31■■■□□ 2.28
SHMT1-203ENST00000354098 MAP3K5Q99683 1374 aa29.31■■■□□ 2.28
SHMT1-203ENST00000354098 GNAT3A8MTJ3 354 aa29.31■■■□□ 2.28
SHMT1-203ENST00000354098 SBF2Q86WG5 1849 aa29.3■■■□□ 2.28
SHMT1-203ENST00000354098 DOT1LQ8TEK3 1739 aa29.3■■■□□ 2.28
SHMT1-203ENST00000354098 RRP7AQ9Y3A4 280 aaKnown RBP29.3■■■□□ 2.28
SHMT1-203ENST00000354098 TOGARAM1Q9Y4F4 1720 aa29.3■■■□□ 2.28
SHMT1-203ENST00000354098 SYTL4Q96C24 671 aaPredicted RBP29.29■■■□□ 2.28
SHMT1-203ENST00000354098 SENP3-EIF4A1A0A087X0R7 540 aa29.28■■■□□ 2.28
SHMT1-203ENST00000354098 TMPOP42166 694 aaKnown RBP29.28■■■□□ 2.28
SHMT1-203ENST00000354098 APAF1O14727 1248 aa29.28■■■□□ 2.28
SHMT1-203ENST00000354098 NEUROD2Q15784 382 aa29.28■■■□□ 2.28
SHMT1-203ENST00000354098 RNMTO43148 476 aaKnown RBP29.27■■■□□ 2.28
SHMT1-203ENST00000354098 IL17REQ8NFR9 667 aa29.27■■■□□ 2.28
SHMT1-203ENST00000354098 UPF1Q92900 1129 aaKnown RBP eCLIP29.27■■■□□ 2.282e-6■□□□□ 8.5
SHMT1-203ENST00000354098 RIPK4P57078 832 aa29.26■■■□□ 2.27
SHMT1-203ENST00000354098 BCL11BQ9C0K0 894 aaPredicted RBP29.26■■■□□ 2.27
SHMT1-203ENST00000354098 NHSQ6T4R5 1651 aa29.25■■■□□ 2.27
SHMT1-203ENST00000354098 DCTN1Q14203 1278 aa29.25■■■□□ 2.27
SHMT1-203ENST00000354098 MCM10Q7L590 875 aa29.25■■■□□ 2.27
SHMT1-203ENST00000354098 KAT6BQ8WYB5 2073 aa29.24■■■□□ 2.27
SHMT1-203ENST00000354098 DLG5Q8TDM6 1919 aa29.23■■■□□ 2.27
SHMT1-203ENST00000354098 ERVV-2B6SEH9 535 aa29.23■■■□□ 2.27
SHMT1-203ENST00000354098 RTF1Q92541 710 aaKnown RBP29.22■■■□□ 2.27
SHMT1-203ENST00000354098 ADAMTS7Q9UKP4 1686 aa29.22■■■□□ 2.27
SHMT1-203ENST00000354098 SCN11AQ9UI33 1791 aa29.22■■■□□ 2.27
SHMT1-203ENST00000354098 PIGBQ92521 554 aa29.21■■■□□ 2.27
SHMT1-203ENST00000354098 HTATSF1O43719 755 aaKnown RBP29.21■■■□□ 2.27
SHMT1-203ENST00000354098 CABP4P57796 275 aa29.21■■■□□ 2.27
SHMT1-203ENST00000354098 NFATC2IPQ8NCF5 419 aa29.21■■■□□ 2.27
SHMT1-203ENST00000354098 ITGB4P16144 1822 aa29.2■■■□□ 2.27
SHMT1-203ENST00000354098 TMOD3Q9NYL9 352 aa29.2■■■□□ 2.26
SHMT1-203ENST00000354098 TNS1Q9HBL0 1735 aaKnown RBP29.19■■■□□ 2.26
SHMT1-203ENST00000354098 APBA3O96018 575 aa29.19■■■□□ 2.26
SHMT1-203ENST00000354098 THUMPD2Q9BTF0 503 aaKnown RBP29.19■■■□□ 2.26
SHMT1-203ENST00000354098 CEMIPQ8WUJ3 1361 aa29.19■■■□□ 2.26
SHMT1-203ENST00000354098 SLC52A2Q9HAB3 445 aa29.18■■■□□ 2.26
SHMT1-203ENST00000354098 TRIM35Q9UPQ4 493 aa29.18■■■□□ 2.26
SHMT1-203ENST00000354098 VIRMAQ69YN4 1812 aaKnown RBP29.18■■■□□ 2.26
SHMT1-203ENST00000354098 CCDC125Q86Z20 511 aa29.18■■■□□ 2.26
SHMT1-203ENST00000354098 SF3B2Q13435 895 aaKnown RBP29.17■■■□□ 2.26
SHMT1-203ENST00000354098 BTAF1O14981 1849 aa29.16■■■□□ 2.26
SHMT1-203ENST00000354098 MRC1P22897 1456 aa29.15■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms