RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 PPP2R1AP30153 589 aa15.92■□□□□ 0.14
SNCA-202ENST00000345009 SEPT12Q8IYM1 358 aa15.91■□□□□ 0.14
SNCA-202ENST00000345009 PIP4P2Q8N4L2 257 aa15.91■□□□□ 0.14
SNCA-202ENST00000345009 NRAPQ86VF7 1730 aa15.91■□□□□ 0.14
SNCA-202ENST00000345009 CDK12Q9NYV4 1490 aaPredicted RBP15.91■□□□□ 0.14
SNCA-202ENST00000345009 PARD3Q8TEW0 1356 aa15.9■□□□□ 0.14
SNCA-202ENST00000345009 ANP32CO43423 234 aa15.9■□□□□ 0.14
SNCA-202ENST00000345009 DIAPH1O60610 1272 aaKnown RBP15.89■□□□□ 0.13
SNCA-202ENST00000345009 IL2RBP14784 551 aa15.89■□□□□ 0.13
SNCA-202ENST00000345009 EIF4A2Q14240 407 aaKnown RBP15.89■□□□□ 0.13
SNCA-202ENST00000345009 NBPF6Q5VWK0 638 aa15.89■□□□□ 0.13
SNCA-202ENST00000345009 RAPGEF4Q8WZA2 1011 aa15.89■□□□□ 0.13
SNCA-202ENST00000345009 NBPF4Q96M43 638 aa15.89■□□□□ 0.13
SNCA-202ENST00000345009 NUDCQ9Y266 331 aa15.89■□□□□ 0.13
SNCA-202ENST00000345009 RGPD5Q99666 1765 aa15.88■□□□□ 0.13
SNCA-202ENST00000345009 PDE3BQ13370 1112 aa15.88■□□□□ 0.13
SNCA-202ENST00000345009 PRKRIP1Q9H875 184 aaPredicted RBP15.88■□□□□ 0.13
SNCA-202ENST00000345009 EXOC5O00471 708 aa15.87■□□□□ 0.13
SNCA-202ENST00000345009 DDB1Q16531 1140 aa15.87■□□□□ 0.13
SNCA-202ENST00000345009 MYBBP1AQ9BQG0 1328 aaKnown RBP15.87■□□□□ 0.13
SNCA-202ENST00000345009 FXR2P51116 673 aaKnown RBP eCLIP15.86■□□□□ 0.13
SNCA-202ENST00000345009 KRT27Q7Z3Y8 459 aa15.86■□□□□ 0.13
SNCA-202ENST00000345009 EYA1Q99502 592 aa15.86■□□□□ 0.13
SNCA-202ENST00000345009 GLI3P10071 1580 aa15.86■□□□□ 0.13
SNCA-202ENST00000345009 TATP17735 454 aaPredicted RBP15.85■□□□□ 0.13
SNCA-202ENST00000345009 IL13P35225 146 aa15.85■□□□□ 0.13
SNCA-202ENST00000345009 PEAK1Q9H792 1746 aa15.85■□□□□ 0.13
SNCA-202ENST00000345009 FAM208AQ9UK61 1670 aaKnown RBP15.84■□□□□ 0.13
SNCA-202ENST00000345009 U2SURPO15042 1029 aaKnown RBP15.83■□□□□ 0.12
SNCA-202ENST00000345009 ILDR2Q71H61 639 aa15.83■□□□□ 0.12
SNCA-202ENST00000345009 USHBP1Q8N6Y0 703 aa15.83■□□□□ 0.12
SNCA-202ENST00000345009 RGS12O14924 1447 aa15.83■□□□□ 0.12
SNCA-202ENST00000345009 SULT6B1Q6IMI4 303 aa15.82■□□□□ 0.12
SNCA-202ENST00000345009 IGSF1Q8N6C5 1336 aa15.82■□□□□ 0.12
SNCA-202ENST00000345009 PROM2Q8N271 834 aa15.81■□□□□ 0.12
SNCA-202ENST00000345009 ZCRB1Q8TBF4 217 aaKnown RBP15.81■□□□□ 0.12
SNCA-202ENST00000345009 SPG7Q9UQ90 795 aa15.81■□□□□ 0.12
SNCA-202ENST00000345009 PRKAR2AP13861 404 aaKnown RBP15.8■□□□□ 0.12
SNCA-202ENST00000345009 FAM196AQ6ZSG2 479 aa15.8■□□□□ 0.12
SNCA-202ENST00000345009 PNNQ9H307 717 aaKnown RBP15.8■□□□□ 0.12
SNCA-202ENST00000345009 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.8■□□□□ 0.12
SNCA-202ENST00000345009 U2AF1L5P0DN76 240 aaPredicted RBP15.79■□□□□ 0.12
SNCA-202ENST00000345009 U2AF1Q01081 240 aaKnown RBP eCLIP15.79■□□□□ 0.12
SNCA-202ENST00000345009 AMOTQ4VCS5 1084 aa15.79■□□□□ 0.12
SNCA-202ENST00000345009 PLEKHO1Q53GL0 409 aaPredicted RBP15.79■□□□□ 0.12
SNCA-202ENST00000345009 DISP2A7MBM2 1401 aa15.78■□□□□ 0.12
SNCA-202ENST00000345009 PLEKHG2Q9H7P9 1386 aa15.78■□□□□ 0.12
SNCA-202ENST00000345009 NEFMP07197 916 aa15.78■□□□□ 0.12
SNCA-202ENST00000345009 DDX54Q8TDD1 881 aaKnown RBP15.77■□□□□ 0.12
SNCA-202ENST00000345009 NCAPD2Q15021 1401 aa15.77■□□□□ 0.11
SNCA-202ENST00000345009 FCHSD2O94868 740 aa15.76■□□□□ 0.11
SNCA-202ENST00000345009 HMOX1P09601 288 aa15.76■□□□□ 0.11
SNCA-202ENST00000345009 CCDC125Q86Z20 511 aa15.76■□□□□ 0.11
SNCA-202ENST00000345009 THSD7AQ9UPZ6 1657 aa15.76■□□□□ 0.11
SNCA-202ENST00000345009 KDRP35968 1356 aa15.75■□□□□ 0.11
SNCA-202ENST00000345009 PCDH11XQ9BZA7 1347 aa15.75■□□□□ 0.11
SNCA-202ENST00000345009 PCDH11YQ9BZA8 1340 aa15.75■□□□□ 0.11
SNCA-202ENST00000345009 WDR43Q15061 677 aaKnown RBP eCLIP15.75■□□□□ 0.11
SNCA-202ENST00000345009 DIEXFQ68CQ4 756 aaKnown RBP15.75■□□□□ 0.11
SNCA-202ENST00000345009 CHADLQ6NUI6 762 aa15.75■□□□□ 0.11
SNCA-202ENST00000345009 AEBP1Q8IUX7 1158 aa15.75■□□□□ 0.11
SNCA-202ENST00000345009 OVOS2A0A0G2JMS6 1433 aa15.75■□□□□ 0.11
SNCA-202ENST00000345009 TNS2Q63HR2 1409 aa15.75■□□□□ 0.11
SNCA-202ENST00000345009 SF3B2Q13435 895 aaKnown RBP15.74■□□□□ 0.11
SNCA-202ENST00000345009 MARCH10Q8NA82 808 aaPredicted RBP15.74■□□□□ 0.11
SNCA-202ENST00000345009 RGPD2P0DJD1 1756 aa15.74■□□□□ 0.11
SNCA-202ENST00000345009 PARP4Q9UKK3 1724 aaKnown RBP15.74■□□□□ 0.11
SNCA-202ENST00000345009 COL3A1P02461 1466 aaPredicted RBP15.73■□□□□ 0.11
SNCA-202ENST00000345009 C1orf141Q5JVX7 400 aa15.73■□□□□ 0.11
SNCA-202ENST00000345009 IFNL2Q8IZJ0 200 aa15.73■□□□□ 0.11
SNCA-202ENST00000345009 MEGF6O75095 1541 aa15.73■□□□□ 0.11
SNCA-202ENST00000345009 HSP90AB1P08238 724 aaKnown RBP15.72■□□□□ 0.11
SNCA-202ENST00000345009 FAM182BQ5T319 152 aa15.72■□□□□ 0.11
SNCA-202ENST00000345009 EP400Q96L91 3159 aa15.71■□□□□ 0.11
SNCA-202ENST00000345009 ZNF530Q6P9A1 599 aaPredicted RBP15.71■□□□□ 0.11
SNCA-202ENST00000345009 MRS2Q9HD23 443 aa15.71■□□□□ 0.11
SNCA-202ENST00000345009 SOCS7O14512 581 aa15.7■□□□□ 0.1
SNCA-202ENST00000345009 PRKAR2BP31323 418 aa15.7■□□□□ 0.1
SNCA-202ENST00000345009 GAS2L2Q8NHY3 880 aa15.7■□□□□ 0.1
SNCA-202ENST00000345009 BRWD3Q6RI45 1802 aa15.7■□□□□ 0.1
SNCA-202ENST00000345009 BCL9O00512 1426 aa15.69■□□□□ 0.1
SNCA-202ENST00000345009 KAT6BQ8WYB5 2073 aa15.69■□□□□ 0.1
SNCA-202ENST00000345009 CYP27B1O15528 508 aa15.69■□□□□ 0.1
SNCA-202ENST00000345009 RSPH6AQ9H0K4 717 aa15.69■□□□□ 0.1
SNCA-202ENST00000345009 MAPK8IP3Q9UPT6 1336 aa15.68■□□□□ 0.1
SNCA-202ENST00000345009 LRRC37A3O60309 1634 aa15.68■□□□□ 0.1
SNCA-202ENST00000345009 WNK3Q9BYP7 1800 aa15.68■□□□□ 0.1
SNCA-202ENST00000345009 TRIM37O94972 964 aa15.68■□□□□ 0.1
SNCA-202ENST00000345009 PHKG2P15735 406 aa15.68■□□□□ 0.1
SNCA-202ENST00000345009 BCL11BQ9C0K0 894 aaPredicted RBP15.68■□□□□ 0.1
SNCA-202ENST00000345009 RGPD1P0DJD0 1748 aa15.68■□□□□ 0.1
SNCA-202ENST00000345009 NKX1-1Q15270 411 aaPredicted RBP15.67■□□□□ 0.1
SNCA-202ENST00000345009 AKAP4Q5JQC9 854 aa15.67■□□□□ 0.1
SNCA-202ENST00000345009 UPF1Q92900 1129 aaKnown RBP eCLIP15.67■□□□□ 0.1
SNCA-202ENST00000345009 DCAF5Q96JK2 942 aa15.67■□□□□ 0.1
SNCA-202ENST00000345009 SYTL4Q96C24 671 aaPredicted RBP15.66■□□□□ 0.1
SNCA-202ENST00000345009 MTHFSDQ2M296 383 aaKnown RBP15.65■□□□□ 0.1
SNCA-202ENST00000345009 ADAMTS8Q9UP79 889 aa15.65■□□□□ 0.1
SNCA-202ENST00000345009 GNAT3A8MTJ3 354 aa15.64■□□□□ 0.09
SNCA-202ENST00000345009 ERVV-2B6SEH9 535 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms