RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 SNX21Q969T3 373 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 CFAP65Q6ZU64 1925 aaKnown RBP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 BECN2A8MW95 431 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 XRCC6P12956 609 aaKnown RBP eCLIP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 SFSWAPQ12872 951 aaKnown RBP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 CCDC40Q4G0X9 1142 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 PABPN1Q86U42 306 aaKnown RBP eCLIP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 ERC1Q8IUD2 1116 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 GDAP1L1Q96MZ0 367 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 CCDC152Q4G0S7 254 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 KIF18AQ8NI77 898 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 SREK1Q8WXA9 508 aaKnown RBP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 DDX12PQ92771 950 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 ZNF830Q96NB3 372 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 PLEKHH2Q8IVE3 1493 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 CASQ1P31415 396 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 BRPF1P55201 1214 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 FAM200AQ8TCP9 573 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 ZNF445P59923 1031 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 MAML3Q96JK9 1138 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 SPATS2LQ9NUQ6 558 aaKnown RBP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 SKILP12757 684 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 NBPF15Q8N660 670 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 CEP112Q8N8E3 955 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 CCDC97Q96F63 343 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 TMEM51Q9NW97 253 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 CCDC102AQ96A19 550 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 ANKS4BQ8N8V4 417 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 NAP1L4Q99733 375 aaKnown RBP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 BICDL2A1A5D9 508 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 SPECC1LQ69YQ0 1117 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 NPC1L1Q9UHC9 1359 aa4.41□□□□□ -1.7
SYNE2-202ENST00000344113 EIF5P55010 431 aaKnown RBP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 SMARCC1Q92922 1105 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-202ENST00000344113 TRIM35Q9UPQ4 493 aa4.4□□□□□ -1.7
SYNE2-202ENST00000344113 R3HCC1Q9Y3T6 440 aaKnown RBP4.4□□□□□ -1.7
SYNE2-202ENST00000344113 BUB1BO60566 1050 aaPredicted RBP4.4□□□□□ -1.7
SYNE2-202ENST00000344113 TTC19Q6DKK2 380 aaPredicted RBP4.4□□□□□ -1.7
SYNE2-202ENST00000344113 OTUD6AQ7L8S5 288 aa4.4□□□□□ -1.7
SYNE2-202ENST00000344113 CCDC18Q5T9S5 1454 aa4.4□□□□□ -1.7
SYNE2-202ENST00000344113 ANKRD24Q8TF21 1146 aa4.4□□□□□ -1.7
SYNE2-202ENST00000344113 HOXA7P31268 230 aaPredicted RBP4.4□□□□□ -1.7
SYNE2-202ENST00000344113 MAP7Q14244 749 aa4.4□□□□□ -1.7
SYNE2-202ENST00000344113 SH3GL3Q99963 347 aa4.4□□□□□ -1.7
SYNE2-202ENST00000344113 FAM114A2Q9NRY5 505 aa4.4□□□□□ -1.7
SYNE2-202ENST00000344113 CRYMQ14894 314 aa4.4□□□□□ -1.7
SYNE2-202ENST00000344113 CBFA2T2O43439 604 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 GMNNO75496 209 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 NUP133Q8WUM0 1156 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 TRIM63Q969Q1 353 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 GFM2Q969S9 779 aaKnown RBP4.4□□□□□ -1.71
SYNE2-202ENST00000344113 C10orf67Q8IYJ2 551 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 KLHL33A6NCF5 533 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 HDGFL1Q5TGJ6 251 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 EFCAB13Q8IY85 973 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 ANKRD13AQ8IZ07 590 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 H0YC42 278 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 EPB41L2O43491 1005 aaKnown RBP4.4□□□□□ -1.71
SYNE2-202ENST00000344113 TPD52P55327 224 aaPredicted RBP4.4□□□□□ -1.71
SYNE2-202ENST00000344113 LRRCC1Q9C099 1032 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 SEPT7Q16181 437 aaKnown RBP4.4□□□□□ -1.71
SYNE2-202ENST00000344113 GOLGA5Q8TBA6 731 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 BHMT2Q9H2M3 363 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 VCXQ9H320 206 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 RLBP1P12271 317 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 SLC8A1P32418 973 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 PSEN1P49768 467 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 RAB15P59190 212 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 GBP6Q6ZN66 633 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 SIN3AQ96ST3 1273 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 FRMD4BQ9Y2L6 1034 aa4.4□□□□□ -1.71
SYNE2-202ENST00000344113 TMCO3Q6UWJ1 677 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 FILIP1Q7Z7B0 1213 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 IKQ13123 557 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-202ENST00000344113 WHAMMQ8TF30 809 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 GPATCH3Q96I76 525 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 BAZ1BQ9UIG0 1483 aaKnown RBP4.39□□□□□ -1.71
SYNE2-202ENST00000344113 HSPA4P34932 840 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 MAGEA9P43362 315 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 MYBPC2Q14324 1141 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 SESN3P58005 492 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 NEDD9Q14511 834 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 B4GALNT4Q76KP1 1039 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 RRAGDQ9NQL2 400 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-202ENST00000344113 CHCHD3Q9NX63 227 aaKnown RBP4.39□□□□□ -1.71
SYNE2-202ENST00000344113 JRKLQ9Y4A0 524 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 SYNRGQ9UMZ2 1314 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 KIAA0753Q2KHM9 967 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 CCDC92Q53HC0 331 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-202ENST00000344113 PHLDB2Q86SQ0 1253 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 PRPF38AQ8NAV1 312 aaKnown RBP4.39□□□□□ -1.71
SYNE2-202ENST00000344113 VPS8Q8N3P4 1428 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 EIF2S1P05198 315 aaKnown RBP4.39□□□□□ -1.71
SYNE2-202ENST00000344113 KCNA4P22459 653 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 CCDC158Q5M9N0 1113 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 ANKRD23Q86SG2 305 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 EXOC4Q96A65 974 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 UBXN4Q92575 508 aa4.39□□□□□ -1.71
SYNE2-202ENST00000344113 MORC2Q9Y6X9 1032 aaPredicted RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms