RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 MAST1Q9Y2H9 1570 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 SMC2O95347 1197 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 TMCO3Q6UWJ1 677 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 NPC1L1Q9UHC9 1359 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 TRPM1Q7Z4N2 1603 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 TNNT1P13805 278 aa5.67□□□□□ -1.5
CSMD3-203ENST00000343508 AKAP17AQ02040 695 aaKnown RBP5.67□□□□□ -1.5
CSMD3-203ENST00000343508 NOLC1Q14978 699 aaKnown RBP eCLIP5.67□□□□□ -1.5
CSMD3-203ENST00000343508 ANAPC15P60006 121 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 URB2Q14146 1524 aaKnown RBP5.66□□□□□ -1.5
CSMD3-203ENST00000343508 ERICH2A1L162 156 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 SURF6O75683 361 aaKnown RBP5.66□□□□□ -1.5
CSMD3-203ENST00000343508 RDXP35241 583 aaKnown RBP5.66□□□□□ -1.5
CSMD3-203ENST00000343508 JMYQ8N9B5 988 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 MYO5CQ9NQX4 1742 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 DNAJC2Q99543 621 aaKnown RBP5.66□□□□□ -1.5
CSMD3-203ENST00000343508 EID1Q9Y6B2 187 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 KDM5DQ9BY66 1539 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 SERPINC1P01008 464 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 USP8P40818 1118 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 PRDM10Q9NQV6 1147 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 CLIP2Q9UDT6 1046 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 CTAGE5O15320 804 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 EIF2S2P20042 333 aaKnown RBP5.66□□□□□ -1.5
CSMD3-203ENST00000343508 CDR1P51861 262 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 KIF20AO95235 890 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 KRT32Q14532 448 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 APPP05067 770 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 GSDMDP57764 484 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 FILIP1LQ4L180 1135 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 ADAMTS12P58397 1594 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 ZSCAN12O43309 604 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 CASTP20810 708 aaKnown RBP5.66□□□□□ -1.5
CSMD3-203ENST00000343508 MX1P20591 662 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 SAFBQ15424 915 aaKnown RBP eCLIP5.66□□□□□ -1.5
CSMD3-203ENST00000343508 FILIP1Q7Z7B0 1213 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 USP25Q9UHP3 1055 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 H0YHG0 523 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 XBP1P17861 261 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 PDRG1Q9NUG6 133 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 TTC22Q5TAA0 569 aa5.66□□□□□ -1.5
CSMD3-203ENST00000343508 PLXNC1O60486 1568 aa5.65□□□□□ -1.5
CSMD3-203ENST00000343508 NECTIN2Q92692 538 aa5.65□□□□□ -1.5
CSMD3-203ENST00000343508 CCDC47Q96A33 483 aaKnown RBP5.65□□□□□ -1.5
CSMD3-203ENST00000343508 FEZ1Q99689 392 aa5.65□□□□□ -1.5
CSMD3-203ENST00000343508 CEP57L1Q8IYX8 460 aa5.65□□□□□ -1.5
CSMD3-203ENST00000343508 ANO10Q9NW15 660 aa5.65□□□□□ -1.5
CSMD3-203ENST00000343508 ABCC2Q92887 1545 aa5.65□□□□□ -1.5
CSMD3-203ENST00000343508 RALYLQ86SE5 291 aaKnown RBP5.65□□□□□ -1.5
CSMD3-203ENST00000343508 UBXN4Q92575 508 aa5.65□□□□□ -1.5
CSMD3-203ENST00000343508 SH2B1Q9NRF2 756 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-203ENST00000343508 DDX19AQ9NUU7 478 aaKnown RBP5.65□□□□□ -1.5
CSMD3-203ENST00000343508 CROCC2H7BZ55 1655 aa5.65□□□□□ -1.5
CSMD3-203ENST00000343508 BCORL1Q5H9F3 1711 aa5.65□□□□□ -1.5
CSMD3-203ENST00000343508 PRIM1P49642 420 aaKnown RBP5.65□□□□□ -1.5
CSMD3-203ENST00000343508 PDILTQ8N807 584 aa5.65□□□□□ -1.5
CSMD3-203ENST00000343508 ZNF445P59923 1031 aa5.65□□□□□ -1.51
CSMD3-203ENST00000343508 ANKRD36BQ8N2N9 1353 aa5.65□□□□□ -1.51
CSMD3-203ENST00000343508 UPF3BQ9BZI7 483 aaKnown RBP5.65□□□□□ -1.51
CSMD3-203ENST00000343508 NUP153P49790 1475 aaKnown RBP5.65□□□□□ -1.51
CSMD3-203ENST00000343508 KDM6BO15054 1643 aa5.65□□□□□ -1.51
CSMD3-203ENST00000343508 BLOC1S2Q6QNY1 142 aa5.65□□□□□ -1.51
CSMD3-203ENST00000343508 MCM3P25205 808 aa5.65□□□□□ -1.51
CSMD3-203ENST00000343508 CWC27Q6UX04 472 aaKnown RBP5.65□□□□□ -1.51
CSMD3-203ENST00000343508 TIGD1Q96MW7 591 aa5.65□□□□□ -1.51
CSMD3-203ENST00000343508 STX6O43752 255 aa5.65□□□□□ -1.51
CSMD3-203ENST00000343508 PIP4K2AP48426 406 aaPredicted RBP5.65□□□□□ -1.51
CSMD3-203ENST00000343508 INTS4Q96HW7 963 aaKnown RBP5.65□□□□□ -1.51
CSMD3-203ENST00000343508 C16orf45Q96MC5 204 aaPredicted RBP5.65□□□□□ -1.51
CSMD3-203ENST00000343508 SHROOM2Q13796 1616 aa5.65□□□□□ -1.51
CSMD3-203ENST00000343508 SYCP2Q9BX26 1530 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 SEC24BO95487 1268 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 ME1P48163 572 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 GBP3Q9H0R5 595 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 VIRMAQ69YN4 1812 aaKnown RBP5.64□□□□□ -1.51
CSMD3-203ENST00000343508 CCDC171Q6TFL3 1326 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 NCBP3Q53F19 620 aaKnown RBP5.64□□□□□ -1.51
CSMD3-203ENST00000343508 AFAP1Q8N556 730 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 EIF4G3O43432 1585 aaKnown RBP5.64□□□□□ -1.51
CSMD3-203ENST00000343508 PRAM1Q96QH2 718 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 FSD1Q9BTV5 496 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 DEF6Q9H4E7 631 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 IQCEQ6IPM2 695 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 BCL11BQ9C0K0 894 aaPredicted RBP5.64□□□□□ -1.51
CSMD3-203ENST00000343508 BRMS1Q9HCU9 246 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 LIMCH1Q9UPQ0 1083 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 MLECQ14165 292 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 IBTKQ9P2D0 1353 aaPredicted RBP5.64□□□□□ -1.51
CSMD3-203ENST00000343508 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.64□□□□□ -1.51
CSMD3-203ENST00000343508 NPHP1O15259 732 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 KIF1BPQ96EK5 621 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 TMX3Q96JJ7 454 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 SLC52A1Q9NWF4 448 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 ERICH4A6NGS2 130 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 GLRX3O76003 335 aaKnown RBP5.64□□□□□ -1.51
CSMD3-203ENST00000343508 TUBB4AP04350 444 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 CDK19Q9BWU1 502 aa5.64□□□□□ -1.51
CSMD3-203ENST00000343508 ZHX1Q9UKY1 873 aaPredicted RBP5.64□□□□□ -1.51
CSMD3-203ENST00000343508 BMS1Q14692 1282 aaKnown RBP5.64□□□□□ -1.51
CSMD3-203ENST00000343508 GOLGA6L9A6NEM1 432 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms