RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 RBM33Q96EV2 1170 aaKnown RBP7.29□□□□□ -1.24
CSDE1-202ENST00000339438 NUP98P52948 1817 aa7.29□□□□□ -1.24
CSDE1-202ENST00000339438 ANTXR1Q9H6X2 564 aa7.28□□□□□ -1.24
CSDE1-202ENST00000339438 AMER1Q5JTC6 1135 aaPredicted RBP7.27□□□□□ -1.25
CSDE1-202ENST00000339438 RGL3Q3MIN7 710 aa7.27□□□□□ -1.25
CSDE1-202ENST00000339438 PLPPR3Q6T4P5 718 aa7.27□□□□□ -1.25
CSDE1-202ENST00000339438 PANK2Q9BZ23 570 aa7.27□□□□□ -1.25
CSDE1-202ENST00000339438 ARAP2Q8WZ64 1704 aa7.27□□□□□ -1.25
CSDE1-202ENST00000339438 PDCL3Q9H2J4 239 aa7.26□□□□□ -1.25
CSDE1-202ENST00000339438 TNRC6CQ9HCJ0 1690 aaKnown RBP7.26□□□□□ -1.25
CSDE1-202ENST00000339438 FER1L6Q2WGJ9 1857 aa7.26□□□□□ -1.25
CSDE1-202ENST00000339438 ROCK2O75116 1388 aaKnown RBP7.26□□□□□ -1.25
CSDE1-202ENST00000339438 SPATA31A5Q5VU36 1347 aa7.26□□□□□ -1.25
CSDE1-202ENST00000339438 SPATA31A7Q8IWB4 1347 aa7.26□□□□□ -1.25
CSDE1-202ENST00000339438 SNED1Q8TER0 1413 aa7.26□□□□□ -1.25
CSDE1-202ENST00000339438 CNGB1Q14028 1251 aaPredicted RBP7.25□□□□□ -1.25
CSDE1-202ENST00000339438 NAP1L5Q96NT1 182 aaPredicted RBP7.25□□□□□ -1.25
CSDE1-202ENST00000339438 PNNQ9H307 717 aaKnown RBP7.25□□□□□ -1.25
CSDE1-202ENST00000339438 AXIN2Q9Y2T1 843 aa7.25□□□□□ -1.25
CSDE1-202ENST00000339438 ACEP12821 1306 aa7.25□□□□□ -1.25
CSDE1-202ENST00000339438 A0A0U1RQG5 324 aaPredicted RBP7.25□□□□□ -1.25
CSDE1-202ENST00000339438 CRB1P82279 1406 aa7.25□□□□□ -1.25
CSDE1-202ENST00000339438 HDGFP51858 240 aaKnown RBP7.25□□□□□ -1.25
CSDE1-202ENST00000339438 RGS3P49796 1198 aa7.24□□□□□ -1.25
CSDE1-202ENST00000339438 CDK19Q9BWU1 502 aa7.24□□□□□ -1.25
CSDE1-202ENST00000339438 KIAA0232Q92628 1395 aa7.24□□□□□ -1.25
CSDE1-202ENST00000339438 HEG1Q9ULI3 1381 aa7.24□□□□□ -1.25
CSDE1-202ENST00000339438 KDM6AO15550 1401 aaPredicted RBP7.24□□□□□ -1.25
CSDE1-202ENST00000339438 FAM83GA6ND36 823 aa7.24□□□□□ -1.25
CSDE1-202ENST00000339438 RCAN3Q9UKA8 241 aa7.24□□□□□ -1.25
CSDE1-202ENST00000339438 TTC21AQ8NDW8 1320 aa7.24□□□□□ -1.25
CSDE1-202ENST00000339438 ARHGEF25Q86VW2 580 aa7.24□□□□□ -1.25
CSDE1-202ENST00000339438 NUDT16Q96DE0 195 aaKnown RBP7.24□□□□□ -1.25
CSDE1-202ENST00000339438 KDM2AQ9Y2K7 1162 aa7.24□□□□□ -1.25
CSDE1-202ENST00000339438 SENP3-EIF4A1A0A087X0R7 540 aa7.23□□□□□ -1.25
CSDE1-202ENST00000339438 SPATA31A1Q5TZJ5 1347 aa7.23□□□□□ -1.25
CSDE1-202ENST00000339438 L1TD1Q5T7N2 865 aaKnown RBP7.23□□□□□ -1.25
CSDE1-202ENST00000339438 POLR3GLQ9BT43 218 aa7.23□□□□□ -1.25
CSDE1-202ENST00000339438 KTN1Q86UP2 1357 aaKnown RBP7.23□□□□□ -1.25
CSDE1-202ENST00000339438 TOM1O60784 492 aa7.22□□□□□ -1.25
CSDE1-202ENST00000339438 FAM161AQ3B820 660 aa7.22□□□□□ -1.25
CSDE1-202ENST00000339438 BARGINQ6ZT62 677 aa7.22□□□□□ -1.25
CSDE1-202ENST00000339438 TTC21BQ7Z4L5 1316 aa7.22□□□□□ -1.25
CSDE1-202ENST00000339438 CACNA1SQ13698 1873 aa7.22□□□□□ -1.25
CSDE1-202ENST00000339438 RIPK4P57078 832 aa7.22□□□□□ -1.25
CSDE1-202ENST00000339438 TAF1P21675 1872 aa7.22□□□□□ -1.25
CSDE1-202ENST00000339438 VPS72Q15906 364 aa7.21□□□□□ -1.25
CSDE1-202ENST00000339438 PROSER2Q86WR7 435 aaPredicted RBP7.21□□□□□ -1.25
CSDE1-202ENST00000339438 C20orf194Q5TEA3 1177 aa7.21□□□□□ -1.26
CSDE1-202ENST00000339438 CRBNQ96SW2 442 aa7.21□□□□□ -1.26
CSDE1-202ENST00000339438 NPHP3Q7Z494 1330 aa7.21□□□□□ -1.26
CSDE1-202ENST00000339438 THSD7BQ9C0I4 1608 aa7.2□□□□□ -1.26
CSDE1-202ENST00000339438 PLIN1O60240 522 aa7.2□□□□□ -1.26
CSDE1-202ENST00000339438 PDE4CQ08493 712 aa7.2□□□□□ -1.26
CSDE1-202ENST00000339438 MYH3P11055 1940 aa7.2□□□□□ -1.26
CSDE1-202ENST00000339438 FYB1O15117 783 aa7.2□□□□□ -1.26
CSDE1-202ENST00000339438 TPM2P07951 284 aa7.2□□□□□ -1.26
CSDE1-202ENST00000339438 CHGAP10645 457 aaKnown RBP7.19□□□□□ -1.26
CSDE1-202ENST00000339438 TIAM2Q8IVF5 1701 aa7.19□□□□□ -1.26
CSDE1-202ENST00000339438 ESPNB1AK53 854 aa7.19□□□□□ -1.26
CSDE1-202ENST00000339438 CDCA7LQ96GN5 454 aa7.19□□□□□ -1.26
CSDE1-202ENST00000339438 PHF8Q9UPP1 1060 aa7.19□□□□□ -1.26
CSDE1-202ENST00000339438 CCDC61Q9Y6R9 512 aa7.19□□□□□ -1.26
CSDE1-202ENST00000339438 SEC24BO95487 1268 aa7.19□□□□□ -1.26
CSDE1-202ENST00000339438 NSD3Q9BZ95 1437 aa7.18□□□□□ -1.26
CSDE1-202ENST00000339438 CEMIPQ8WUJ3 1361 aa7.18□□□□□ -1.26
CSDE1-202ENST00000339438 GTF2E1P29083 439 aaPredicted RBP7.18□□□□□ -1.26
CSDE1-202ENST00000339438 DUOX1Q9NRD9 1551 aa7.18□□□□□ -1.26
CSDE1-202ENST00000339438 CHD4Q14839 1912 aa7.18□□□□□ -1.26
CSDE1-202ENST00000339438 ST20-MTHFSA0A0A6YYL1 179 aa7.17□□□□□ -1.26
CSDE1-202ENST00000339438 UBAP1LF5GYI3 381 aa7.17□□□□□ -1.26
CSDE1-202ENST00000339438 PDE3BQ13370 1112 aa7.17□□□□□ -1.26
CSDE1-202ENST00000339438 PHF23Q9BUL5 403 aaPredicted RBP7.17□□□□□ -1.26
CSDE1-202ENST00000339438 ESF1Q9H501 851 aaKnown RBP7.17□□□□□ -1.26
CSDE1-202ENST00000339438 NKX1-1Q15270 411 aaPredicted RBP7.17□□□□□ -1.26
CSDE1-202ENST00000339438 CENPQQ7L2Z9 268 aaPredicted RBP7.17□□□□□ -1.26
CSDE1-202ENST00000339438 ZRANB1Q9UGI0 708 aa7.17□□□□□ -1.26
CSDE1-202ENST00000339438 ECM29Q5VYK3 1845 aa7.17□□□□□ -1.26
CSDE1-202ENST00000339438 GOLGA6L3A6NEY3 463 aa7.17□□□□□ -1.26
CSDE1-202ENST00000339438 ERBB3P21860 1342 aa7.16□□□□□ -1.26
CSDE1-202ENST00000339438 LRRC59Q96AG4 307 aaKnown RBP7.16□□□□□ -1.26
CSDE1-202ENST00000339438 SGIP1Q9BQI5 828 aa7.16□□□□□ -1.26
CSDE1-202ENST00000339438 TRAK1Q9UPV9 953 aa7.16□□□□□ -1.26
CSDE1-202ENST00000339438 SMAP1Q8IYB5 467 aaPredicted RBP7.16□□□□□ -1.26
CSDE1-202ENST00000339438 BCL11BQ9C0K0 894 aaPredicted RBP7.16□□□□□ -1.26
CSDE1-202ENST00000339438 IGSF1Q8N6C5 1336 aa7.16□□□□□ -1.26
CSDE1-202ENST00000339438 PXDNLA1KZ92 1463 aa7.15□□□□□ -1.26
CSDE1-202ENST00000339438 TERF1P54274 439 aa7.15□□□□□ -1.26
CSDE1-202ENST00000339438 FOCADQ5VW36 1801 aa7.14□□□□□ -1.27
CSDE1-202ENST00000339438 MRE11P49959 708 aa7.14□□□□□ -1.27
CSDE1-202ENST00000339438 KRT28Q7Z3Y7 464 aa7.14□□□□□ -1.27
CSDE1-202ENST00000339438 GAS2L3Q86XJ1 694 aa7.14□□□□□ -1.27
CSDE1-202ENST00000339438 PROM2Q8N271 834 aa7.14□□□□□ -1.27
CSDE1-202ENST00000339438 ZNF692Q9BU19 519 aaPredicted RBP7.14□□□□□ -1.27
CSDE1-202ENST00000339438 DDIT3P35638 169 aa7.14□□□□□ -1.27
CSDE1-202ENST00000339438 KIAA1211Q6ZU35 1233 aa7.14□□□□□ -1.27
CSDE1-202ENST00000339438 PLEKHF1Q96S99 279 aa7.14□□□□□ -1.27
CSDE1-202ENST00000339438 CABP2Q9NPB3 220 aa7.14□□□□□ -1.27
CSDE1-202ENST00000339438 MYBBP1AQ9BQG0 1328 aaKnown RBP7.14□□□□□ -1.27
CSDE1-202ENST00000339438 MCM4P33991 863 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms