RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 MSL1Q68DK7 614 aa10.21□□□□□ -0.77
USF3-201ENST00000316407 DACH1Q9UI36 760 aa10.21□□□□□ -0.77
USF3-201ENST00000316407 KIF4BQ2VIQ3 1234 aa10.21□□□□□ -0.77
USF3-201ENST00000316407 GBP3Q9H0R5 595 aa10.21□□□□□ -0.77
USF3-201ENST00000316407 SSFA2P28290 1259 aa10.21□□□□□ -0.77
USF3-201ENST00000316407 DNAJC21Q5F1R6 531 aaKnown RBP10.21□□□□□ -0.77
USF3-201ENST00000316407 NUP88Q99567 741 aaPredicted RBP10.21□□□□□ -0.77
USF3-201ENST00000316407 CCDC94Q9BW85 323 aaPredicted RBP10.21□□□□□ -0.78
USF3-201ENST00000316407 DHX8Q14562 1220 aaKnown RBP10.21□□□□□ -0.78
USF3-201ENST00000316407 TNPO1Q92973 898 aaKnown RBP10.21□□□□□ -0.78
USF3-201ENST00000316407 NUP133Q8WUM0 1156 aa10.21□□□□□ -0.78
USF3-201ENST00000316407 KIF2AO00139 706 aaPredicted RBP10.21□□□□□ -0.78
USF3-201ENST00000316407 JADE2Q9NQC1 790 aa10.2□□□□□ -0.78
USF3-201ENST00000316407 MCM6Q14566 821 aa10.2□□□□□ -0.78
USF3-201ENST00000316407 WDR97A6NE52 1622 aa10.2□□□□□ -0.78
USF3-201ENST00000316407 DDX58O95786 925 aaKnown RBP10.2□□□□□ -0.78
USF3-201ENST00000316407 SNW1Q13573 536 aaKnown RBP10.2□□□□□ -0.78
USF3-201ENST00000316407 SURF6O75683 361 aaKnown RBP10.2□□□□□ -0.78
USF3-201ENST00000316407 ATP2B2Q01814 1243 aa10.2□□□□□ -0.78
USF3-201ENST00000316407 GDPD2Q9HCC8 539 aa10.2□□□□□ -0.78
USF3-201ENST00000316407 SSBP05455 408 aaKnown RBP eCLIP10.2□□□□□ -0.78
USF3-201ENST00000316407 SPA17Q15506 151 aa10.2□□□□□ -0.78
USF3-201ENST00000316407 CPLX3Q8WVH0 158 aa10.2□□□□□ -0.78
USF3-201ENST00000316407 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.2□□□□□ -0.78
USF3-201ENST00000316407 EVC2Q86UK5 1308 aa10.2□□□□□ -0.78
USF3-201ENST00000316407 GSTTP1A0A1W2PQM5 241 aa10.2□□□□□ -0.78
USF3-201ENST00000316407 SPECC1Q5M775 1068 aa10.2□□□□□ -0.78
USF3-201ENST00000316407 TOP1P11387 765 aaKnown RBP10.2□□□□□ -0.78
USF3-201ENST00000316407 GTF3C6Q969F1 213 aa10.2□□□□□ -0.78
USF3-201ENST00000316407 CAPN2P17655 700 aa10.2□□□□□ -0.78
USF3-201ENST00000316407 ZNF397Q8NF99 534 aaPredicted RBP10.2□□□□□ -0.78
USF3-201ENST00000316407 CHD1LQ86WJ1 897 aa10.19□□□□□ -0.78
USF3-201ENST00000316407 JAKMIP1Q96N16 626 aaKnown RBP10.19□□□□□ -0.78
USF3-201ENST00000316407 DDX54Q8TDD1 881 aaKnown RBP10.19□□□□□ -0.78
USF3-201ENST00000316407 PDRG1Q9NUG6 133 aa10.19□□□□□ -0.78
USF3-201ENST00000316407 SMC1AQ14683 1233 aaKnown RBP10.19□□□□□ -0.78
USF3-201ENST00000316407 BIN1O00499 593 aa10.19□□□□□ -0.78
USF3-201ENST00000316407 CCDC97Q96F63 343 aaPredicted RBP10.19□□□□□ -0.78
USF3-201ENST00000316407 LARP6Q9BRS8 491 aaKnown RBP10.19□□□□□ -0.78
USF3-201ENST00000316407 HSPA4P34932 840 aa10.19□□□□□ -0.78
USF3-201ENST00000316407 HSP90AB4PQ58FF6 505 aa10.19□□□□□ -0.78
USF3-201ENST00000316407 ERCC6Q03468 1493 aa10.19□□□□□ -0.78
USF3-201ENST00000316407 TMC6Q7Z403 805 aa10.19□□□□□ -0.78
USF3-201ENST00000316407 CTNNBL1Q8WYA6 563 aaPredicted RBP10.19□□□□□ -0.78
USF3-201ENST00000316407 SPINK5Q9NQ38 1064 aaPredicted RBP10.19□□□□□ -0.78
USF3-201ENST00000316407 BRD4O60885 1362 aaPredicted RBP10.19□□□□□ -0.78
USF3-201ENST00000316407 KIF3BO15066 747 aa10.19□□□□□ -0.78
USF3-201ENST00000316407 ISM2Q6H9L7 571 aa10.18□□□□□ -0.78
USF3-201ENST00000316407 AK9Q5TCS8 1911 aa10.18□□□□□ -0.78
USF3-201ENST00000316407 SMTNL1A8MU46 457 aa10.18□□□□□ -0.78
USF3-201ENST00000316407 FAM160A1Q05DH4 1040 aa10.18□□□□□ -0.78
USF3-201ENST00000316407 RIC3Q7Z5B4 369 aa10.18□□□□□ -0.78
USF3-201ENST00000316407 PAIP2Q9BPZ3 127 aaKnown RBP10.18□□□□□ -0.78
USF3-201ENST00000316407 PHACTR2O75167 634 aa10.18□□□□□ -0.78
USF3-201ENST00000316407 CPSF2Q9P2I0 782 aaKnown RBP10.18□□□□□ -0.78
USF3-201ENST00000316407 TMCO4Q5TGY1 634 aa10.18□□□□□ -0.78
USF3-201ENST00000316407 MCM3P25205 808 aa10.18□□□□□ -0.78
USF3-201ENST00000316407 RAPGEF2Q9Y4G8 1499 aa10.17□□□□□ -0.78
USF3-201ENST00000316407 GNAI1P63096 354 aa10.17□□□□□ -0.78
USF3-201ENST00000316407 ANKRD1Q15327 319 aa10.17□□□□□ -0.78
USF3-201ENST00000316407 CCDC12Q8WUD4 166 aaPredicted RBP10.17□□□□□ -0.78
USF3-201ENST00000316407 NUTM2GQ5VZR2 741 aa10.17□□□□□ -0.78
USF3-201ENST00000316407 PDIA4P13667 645 aaKnown RBP10.17□□□□□ -0.78
USF3-201ENST00000316407 DRC1Q96MC2 740 aa10.17□□□□□ -0.78
USF3-201ENST00000316407 ZSCAN23Q3MJ62 389 aa10.17□□□□□ -0.78
USF3-201ENST00000316407 VPS18Q9P253 973 aa10.17□□□□□ -0.78
USF3-201ENST00000316407 CCDC69A6NI79 296 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 TRIM22Q8IYM9 498 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 APBB1IPQ7Z5R6 666 aaPredicted RBP10.16□□□□□ -0.78
USF3-201ENST00000316407 TTC16Q8NEE8 873 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 AAMPQ13685 434 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 CCDC6Q16204 474 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 CCDC83Q8IWF9 413 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 ARFGAP3Q9NP61 516 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 PRPF4BQ13523 1007 aaKnown RBP10.16□□□□□ -0.78
USF3-201ENST00000316407 STAMBPO95630 424 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 IMMTQ16891 758 aaKnown RBP10.16□□□□□ -0.78
USF3-201ENST00000316407 ZEB2O60315 1214 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 BMS1Q14692 1282 aaKnown RBP10.16□□□□□ -0.78
USF3-201ENST00000316407 GCOM1H8Y6P7 765 aaPredicted RBP10.16□□□□□ -0.78
USF3-201ENST00000316407 MYZAPP0CAP1 466 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 TERF1P54274 439 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 ANAPC15P60006 121 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 SEPT6Q14141 434 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 SPECC1LQ69YQ0 1117 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 SMG6Q86US8 1419 aaKnown RBP10.16□□□□□ -0.78
USF3-201ENST00000316407 CCDC96Q2M329 555 aa10.16□□□□□ -0.78
USF3-201ENST00000316407 GBP6Q6ZN66 633 aa10.15□□□□□ -0.78
USF3-201ENST00000316407 TBC1D2Q9BYX2 928 aa10.15□□□□□ -0.78
USF3-201ENST00000316407 IVLP07476 585 aa10.15□□□□□ -0.78
USF3-201ENST00000316407 CIZ1Q9ULV3 898 aaPredicted RBP10.15□□□□□ -0.78
USF3-201ENST00000316407 TTC39AQ5SRH9 613 aa10.15□□□□□ -0.78
USF3-201ENST00000316407 C20orf194Q5TEA3 1177 aa10.15□□□□□ -0.78
USF3-201ENST00000316407 GIGYF2Q6Y7W6 1299 aaKnown RBP10.15□□□□□ -0.78
USF3-201ENST00000316407 PSMD1Q99460 953 aa10.15□□□□□ -0.78
USF3-201ENST00000316407 TCP11L2Q8N4U5 519 aa10.15□□□□□ -0.78
USF3-201ENST00000316407 CEP112Q8N8E3 955 aa10.15□□□□□ -0.78
USF3-201ENST00000316407 XRCC6P12956 609 aaKnown RBP eCLIP10.15□□□□□ -0.79
USF3-201ENST00000316407 EXOSC9Q06265 439 aaKnown RBP10.15□□□□□ -0.79
USF3-201ENST00000316407 GTPBP4Q9BZE4 634 aaKnown RBP10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms