RNA–Protein interactions for RNA: ENST00000263741.11

SDF4-201, Transcript of stromal cell derived factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDF4, Length 2,079 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-201ENST00000263741 CCDC184Q52MB2 194 aa24.59■■□□□ 1.53
SDF4-201ENST00000263741 CDCA7Q9BWT1 371 aaPredicted RBP24.59■■□□□ 1.53
SDF4-201ENST00000263741 KDRP35968 1356 aa24.59■■□□□ 1.53
SDF4-201ENST00000263741 TATP17735 454 aaPredicted RBP24.58■■□□□ 1.53
SDF4-201ENST00000263741 PDE3BQ13370 1112 aa24.57■■□□□ 1.52
SDF4-201ENST00000263741 SBF2Q86WG5 1849 aa24.57■■□□□ 1.52
SDF4-201ENST00000263741 EXOC5O00471 708 aa24.55■■□□□ 1.52
SDF4-201ENST00000263741 DIEXFQ68CQ4 756 aaKnown RBP24.55■■□□□ 1.52
SDF4-201ENST00000263741 U2AF1L5P0DN76 240 aaPredicted RBP24.55■■□□□ 1.52
SDF4-201ENST00000263741 U2AF1Q01081 240 aaKnown RBP eCLIP24.55■■□□□ 1.52
SDF4-201ENST00000263741 DOT1LQ8TEK3 1739 aa24.54■■□□□ 1.52
SDF4-201ENST00000263741 MARCH10Q8NA82 808 aaPredicted RBP24.54■■□□□ 1.52
SDF4-201ENST00000263741 VIRMAQ69YN4 1812 aaKnown RBP24.54■■□□□ 1.52
SDF4-201ENST00000263741 DDX54Q8TDD1 881 aaKnown RBP24.54■■□□□ 1.52
SDF4-201ENST00000263741 NUDCQ9Y266 331 aa24.54■■□□□ 1.52
SDF4-201ENST00000263741 ZCRB1Q8TBF4 217 aaKnown RBP24.53■■□□□ 1.52
SDF4-201ENST00000263741 TOGARAM1Q9Y4F4 1720 aa24.51■■□□□ 1.51
SDF4-201ENST00000263741 RSPH6AQ9H0K4 717 aa24.49■■□□□ 1.51
SDF4-201ENST00000263741 PRKAR2BP31323 418 aa24.49■■□□□ 1.51
SDF4-201ENST00000263741 TNS1Q9HBL0 1735 aaKnown RBP24.48■■□□□ 1.51
SDF4-201ENST00000263741 CYP27B1O15528 508 aa24.47■■□□□ 1.51
SDF4-201ENST00000263741 PCDH11XQ9BZA7 1347 aa24.47■■□□□ 1.51
SDF4-201ENST00000263741 PCDH11YQ9BZA8 1340 aa24.47■■□□□ 1.51
SDF4-201ENST00000263741 MRS2Q9HD23 443 aa24.47■■□□□ 1.51
SDF4-201ENST00000263741 DLG5Q8TDM6 1919 aa24.46■■□□□ 1.51
SDF4-201ENST00000263741 SPG7Q9UQ90 795 aa24.46■■□□□ 1.51
SDF4-201ENST00000263741 NHSQ6T4R5 1651 aa24.45■■□□□ 1.5
SDF4-201ENST00000263741 ITGB4P16144 1822 aa24.45■■□□□ 1.5
SDF4-201ENST00000263741 WDR43Q15061 677 aaKnown RBP eCLIP24.44■■□□□ 1.5
SDF4-201ENST00000263741 ZNF530Q6P9A1 599 aaPredicted RBP24.44■■□□□ 1.5
SDF4-201ENST00000263741 PHACTR3Q96KR7 559 aa24.44■■□□□ 1.5
SDF4-201ENST00000263741 PLEKHO1Q53GL0 409 aaPredicted RBP24.43■■□□□ 1.5
SDF4-201ENST00000263741 ACSBG1Q96GR2 724 aa24.43■■□□□ 1.5
SDF4-201ENST00000263741 FAM196AQ6ZSG2 479 aa24.42■■□□□ 1.5
SDF4-201ENST00000263741 PTF1AQ7RTS3 328 aa24.42■■□□□ 1.5
SDF4-201ENST00000263741 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.42■■□□□ 1.5
SDF4-201ENST00000263741 SCN11AQ9UI33 1791 aa24.42■■□□□ 1.5
SDF4-201ENST00000263741 BTAF1O14981 1849 aa24.41■■□□□ 1.5
SDF4-201ENST00000263741 MTHFSDQ2M296 383 aaKnown RBP24.41■■□□□ 1.5
SDF4-201ENST00000263741 TRIM37O94972 964 aa24.41■■□□□ 1.5
SDF4-201ENST00000263741 PHKG2P15735 406 aa24.41■■□□□ 1.5
SDF4-201ENST00000263741 FCHSD2O94868 740 aa24.4■■□□□ 1.5
SDF4-201ENST00000263741 CENPBP07199 599 aaPredicted RBP24.4■■□□□ 1.5
SDF4-201ENST00000263741 CCDC146Q8IYE0 955 aa24.4■■□□□ 1.5
SDF4-201ENST00000263741 ADAMTS8Q9UP79 889 aa24.4■■□□□ 1.5
SDF4-201ENST00000263741 PLEKHG2Q9H7P9 1386 aa24.4■■□□□ 1.5
SDF4-201ENST00000263741 AMOTQ4VCS5 1084 aa24.39■■□□□ 1.5
SDF4-201ENST00000263741 MIER1Q8N108 512 aa24.39■■□□□ 1.5
SDF4-201ENST00000263741 KCNQ2O43526 872 aa24.38■■□□□ 1.49
SDF4-201ENST00000263741 KDM6AO15550 1401 aaPredicted RBP24.38■■□□□ 1.49
SDF4-201ENST00000263741 IFNL2Q8IZJ0 200 aa24.38■■□□□ 1.49
SDF4-201ENST00000263741 UPF1Q92900 1129 aaKnown RBP eCLIP24.38■■□□□ 1.495e-9■■■■■ 30.1
SDF4-201ENST00000263741 BCL9O00512 1426 aa24.37■■□□□ 1.49
SDF4-201ENST00000263741 PLEKHF1Q96S99 279 aa24.37■■□□□ 1.49
SDF4-201ENST00000263741 C1orf141Q5JVX7 400 aa24.36■■□□□ 1.49
SDF4-201ENST00000263741 PNISRQ8TF01 805 aaKnown RBP24.35■■□□□ 1.49
SDF4-201ENST00000263741 SYTL4Q96C24 671 aaPredicted RBP24.35■■□□□ 1.49
SDF4-201ENST00000263741 MPRIPQ6WCQ1 1025 aa24.34■■□□□ 1.49
SDF4-201ENST00000263741 ADAMTS7Q9UKP4 1686 aa24.34■■□□□ 1.49
SDF4-201ENST00000263741 MAPK8IP3Q9UPT6 1336 aa24.33■■□□□ 1.49
SDF4-201ENST00000263741 SENP3-EIF4A1A0A087X0R7 540 aa24.33■■□□□ 1.48
SDF4-201ENST00000263741 PRIM1P49642 420 aaKnown RBP24.33■■□□□ 1.48
SDF4-201ENST00000263741 NKX1-1Q15270 411 aaPredicted RBP24.32■■□□□ 1.48
SDF4-201ENST00000263741 MAP3K5Q99683 1374 aa24.32■■□□□ 1.48
SDF4-201ENST00000263741 AKAP4Q5JQC9 854 aa24.31■■□□□ 1.48
SDF4-201ENST00000263741 PELP1Q8IZL8 1130 aaKnown RBP24.31■■□□□ 1.48
SDF4-201ENST00000263741 GAS2L2Q8NHY3 880 aa24.31■■□□□ 1.48
SDF4-201ENST00000263741 SOCS7O14512 581 aa24.31■■□□□ 1.48
SDF4-201ENST00000263741 FAM9BQ8IZU0 186 aa24.3■■□□□ 1.48
SDF4-201ENST00000263741 NEFMP07197 916 aa24.3■■□□□ 1.48
SDF4-201ENST00000263741 DEFB132Q7Z7B7 95 aa24.29■■□□□ 1.48
SDF4-201ENST00000263741 LGR6Q9HBX8 967 aa24.29■■□□□ 1.48
SDF4-201ENST00000263741 RRP7AQ9Y3A4 280 aaKnown RBP24.29■■□□□ 1.48
SDF4-201ENST00000263741 SIPA1L3O60292 1781 aaPredicted RBP24.29■■□□□ 1.48
SDF4-201ENST00000263741 DCAF5Q96JK2 942 aa24.28■■□□□ 1.48
SDF4-201ENST00000263741 BCL11BQ9C0K0 894 aaPredicted RBP24.28■■□□□ 1.48
SDF4-201ENST00000263741 GNAT3A8MTJ3 354 aa24.26■■□□□ 1.47
SDF4-201ENST00000263741 APBA3O96018 575 aa24.26■■□□□ 1.47
SDF4-201ENST00000263741 HSP90AB1P08238 724 aaKnown RBP24.26■■□□□ 1.47
SDF4-201ENST00000263741 RUNDC1Q96C34 613 aa24.26■■□□□ 1.47
SDF4-201ENST00000263741 PNNQ9H307 717 aaKnown RBP24.26■■□□□ 1.47
SDF4-201ENST00000263741 CCER2I3L3R5 266 aa24.26■■□□□ 1.47
SDF4-201ENST00000263741 SF3B2Q13435 895 aaKnown RBP24.26■■□□□ 1.47
SDF4-201ENST00000263741 DCTN1Q14203 1278 aa24.25■■□□□ 1.47
SDF4-201ENST00000263741 NEUROD2Q15784 382 aa24.25■■□□□ 1.47
SDF4-201ENST00000263741 NFE2L2Q16236 605 aa24.25■■□□□ 1.47
SDF4-201ENST00000263741 MRC1P22897 1456 aa24.25■■□□□ 1.47
SDF4-201ENST00000263741 RNMTO43148 476 aaKnown RBP24.25■■□□□ 1.47
SDF4-201ENST00000263741 RGPD3A6NKT7 1758 aaPredicted RBP24.24■■□□□ 1.47
SDF4-201ENST00000263741 RGPD4Q7Z3J3 1758 aa24.24■■□□□ 1.47
SDF4-201ENST00000263741 MCM10Q7L590 875 aa24.24■■□□□ 1.47
SDF4-201ENST00000263741 LY75O60449 1722 aa24.24■■□□□ 1.47
SDF4-201ENST00000263741 EN1Q05925 392 aaPredicted RBP24.23■■□□□ 1.47
SDF4-201ENST00000263741 IL17REQ8NFR9 667 aa24.23■■□□□ 1.47
SDF4-201ENST00000263741 PIGBQ92521 554 aa24.23■■□□□ 1.47
SDF4-201ENST00000263741 TMOD3Q9NYL9 352 aa24.23■■□□□ 1.47
SDF4-201ENST00000263741 RREB1Q92766 1687 aa24.23■■□□□ 1.47
SDF4-201ENST00000263741 TMPOP42166 694 aaKnown RBP24.22■■□□□ 1.47
SDF4-201ENST00000263741 PAPPAQ13219 1627 aa24.22■■□□□ 1.47
SDF4-201ENST00000263741 APAF1O14727 1248 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms