RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 RGPD3A6NKT7 1758 aaPredicted RBP8.08□□□□□ -1.12
TOPBP1-201ENST00000260810 RGPD4Q7Z3J3 1758 aa8.08□□□□□ -1.12
TOPBP1-201ENST00000260810 NBPF6Q5VWK0 638 aa8.08□□□□□ -1.12
TOPBP1-201ENST00000260810 NBPF4Q96M43 638 aa8.08□□□□□ -1.12
TOPBP1-201ENST00000260810 VGFO15240 615 aaPredicted RBP8.08□□□□□ -1.12
TOPBP1-201ENST00000260810 CPDO75976 1380 aa8.07□□□□□ -1.12
TOPBP1-201ENST00000260810 NUTM2FA1L443 756 aa8.07□□□□□ -1.12
TOPBP1-201ENST00000260810 CCER2I3L3R5 266 aa8.07□□□□□ -1.12
TOPBP1-201ENST00000260810 ARHGEF25Q86VW2 580 aa8.07□□□□□ -1.12
TOPBP1-201ENST00000260810 SNED1Q8TER0 1413 aa8.07□□□□□ -1.12
TOPBP1-201ENST00000260810 PDIA6Q15084 440 aa8.07□□□□□ -1.12
TOPBP1-201ENST00000260810 THUMPD2Q9BTF0 503 aaKnown RBP8.07□□□□□ -1.12
TOPBP1-201ENST00000260810 PMFBP1Q8TBY8 1022 aa8.07□□□□□ -1.12
TOPBP1-201ENST00000260810 CABLES1Q8TDN4 633 aa8.07□□□□□ -1.12
TOPBP1-201ENST00000260810 DOCK2Q92608 1830 aa8.06□□□□□ -1.12
TOPBP1-201ENST00000260810 MTHFSP49914 203 aa8.06□□□□□ -1.12
TOPBP1-201ENST00000260810 XPCQ01831 940 aaPredicted RBP8.06□□□□□ -1.12
TOPBP1-201ENST00000260810 ARAP2Q8WZ64 1704 aa8.06□□□□□ -1.12
TOPBP1-201ENST00000260810 ZEB1P37275 1124 aaPredicted RBP8.06□□□□□ -1.12
TOPBP1-201ENST00000260810 KCNQ3O43525 872 aa8.06□□□□□ -1.12
TOPBP1-201ENST00000260810 PAPPA2Q9BXP8 1791 aa8.06□□□□□ -1.12
TOPBP1-201ENST00000260810 DLEC1Q9Y238 1755 aa8.06□□□□□ -1.12
TOPBP1-201ENST00000260810 CC2D1BQ5T0F9 858 aaKnown RBP8.06□□□□□ -1.12
TOPBP1-201ENST00000260810 SPATA31A3Q5VYP0 1347 aa8.06□□□□□ -1.12
TOPBP1-201ENST00000260810 SCN9AQ15858 1988 aa8.05□□□□□ -1.12
TOPBP1-201ENST00000260810 KAZALD1Q96I82 304 aa8.05□□□□□ -1.12
TOPBP1-201ENST00000260810 SIPA1L1O43166 1804 aa8.05□□□□□ -1.12
TOPBP1-201ENST00000260810 IL17REQ8NFR9 667 aa8.05□□□□□ -1.12
TOPBP1-201ENST00000260810 STAC3Q96MF2 364 aa8.05□□□□□ -1.12
TOPBP1-201ENST00000260810 COL4A5P29400 1685 aa8.05□□□□□ -1.12
TOPBP1-201ENST00000260810 ECM29Q5VYK3 1845 aa8.05□□□□□ -1.12
TOPBP1-201ENST00000260810 TNS3Q68CZ2 1445 aa8.04□□□□□ -1.12
TOPBP1-201ENST00000260810 LRRC37AA6NMS7 1700 aa8.04□□□□□ -1.12
TOPBP1-201ENST00000260810 RELNP78509 3460 aa8.04□□□□□ -1.12
TOPBP1-201ENST00000260810 KDM2BQ8NHM5 1336 aa8.04□□□□□ -1.12
TOPBP1-201ENST00000260810 EYA1Q99502 592 aa8.03□□□□□ -1.12
TOPBP1-201ENST00000260810 MYBBP1AQ9BQG0 1328 aaKnown RBP8.03□□□□□ -1.12
TOPBP1-201ENST00000260810 DDX60LQ5H9U9 1706 aaKnown RBP8.03□□□□□ -1.12
TOPBP1-201ENST00000260810 EIF3AQ14152 1382 aaKnown RBP8.03□□□□□ -1.12
TOPBP1-201ENST00000260810 CCDC61Q9Y6R9 512 aa8.02□□□□□ -1.12
TOPBP1-201ENST00000260810 DUOX1Q9NRD9 1551 aa8.02□□□□□ -1.13
TOPBP1-201ENST00000260810 LRRC59Q96AG4 307 aaKnown RBP8.02□□□□□ -1.13
TOPBP1-201ENST00000260810 OVOS2A0A0G2JMS6 1433 aa8.02□□□□□ -1.13
TOPBP1-201ENST00000260810 BSNQ9UPA5 3926 aa8.01□□□□□ -1.13
TOPBP1-201ENST00000260810 CYP27B1O15528 508 aa8.01□□□□□ -1.13
TOPBP1-201ENST00000260810 DCTN1Q14203 1278 aa8.01□□□□□ -1.13
TOPBP1-201ENST00000260810 WWC1Q8IX03 1113 aa8.01□□□□□ -1.13
TOPBP1-201ENST00000260810 ZBED9Q6R2W3 1325 aa8.01□□□□□ -1.13
TOPBP1-201ENST00000260810 NKX2-3Q8TAU0 364 aa8.01□□□□□ -1.13
TOPBP1-201ENST00000260810 ERBB3P21860 1342 aa8.01□□□□□ -1.13
TOPBP1-201ENST00000260810 FOCADQ5VW36 1801 aa8□□□□□ -1.13
TOPBP1-201ENST00000260810 KTN1Q86UP2 1357 aaKnown RBP8□□□□□ -1.13
TOPBP1-201ENST00000260810 HOXC9P31274 260 aa8□□□□□ -1.13
TOPBP1-201ENST00000260810 LGR6Q9HBX8 967 aa7.99□□□□□ -1.13
TOPBP1-201ENST00000260810 KIAA0232Q92628 1395 aa7.99□□□□□ -1.13
TOPBP1-201ENST00000260810 SBNO1A3KN83 1393 aa7.99□□□□□ -1.13
TOPBP1-201ENST00000260810 SLFN5Q08AF3 891 aa7.99□□□□□ -1.13
TOPBP1-201ENST00000260810 PROM2Q8N271 834 aa7.99□□□□□ -1.13
TOPBP1-201ENST00000260810 DMXL1Q9Y485 3027 aa7.98□□□□□ -1.13
TOPBP1-201ENST00000260810 PSME4Q14997 1843 aa7.98□□□□□ -1.13
TOPBP1-201ENST00000260810 CCDC146Q8IYE0 955 aa7.98□□□□□ -1.13
TOPBP1-201ENST00000260810 NINLQ9Y2I6 1382 aa7.98□□□□□ -1.13
TOPBP1-201ENST00000260810 SMIM5Q71RC9 77 aa7.98□□□□□ -1.13
TOPBP1-201ENST00000260810 BCAR3O75815 825 aa7.98□□□□□ -1.13
TOPBP1-201ENST00000260810 IL25Q9H293 177 aa7.97□□□□□ -1.13
TOPBP1-201ENST00000260810 SUPT16HQ9Y5B9 1047 aaKnown RBP7.97□□□□□ -1.13
TOPBP1-201ENST00000260810 WTIPA6NIX2 430 aaPredicted RBP7.97□□□□□ -1.13
TOPBP1-201ENST00000260810 SMG1Q96Q15 3661 aaKnown RBP7.97□□□□□ -1.13
TOPBP1-201ENST00000260810 FRYQ5TBA9 3013 aa7.97□□□□□ -1.13
TOPBP1-201ENST00000260810 ARHGEF10O15013 1369 aa7.96□□□□□ -1.13
TOPBP1-201ENST00000260810 SMCHD1A6NHR9 2005 aa7.96□□□□□ -1.13
TOPBP1-201ENST00000260810 NUTM2GQ5VZR2 741 aa7.96□□□□□ -1.13
TOPBP1-201ENST00000260810 MTHFSDQ2M296 383 aaKnown RBP7.96□□□□□ -1.14
TOPBP1-201ENST00000260810 SALL3Q9BXA9 1300 aa7.96□□□□□ -1.14
TOPBP1-201ENST00000260810 C8orf58Q8NAV2 365 aa7.96□□□□□ -1.14
TOPBP1-201ENST00000260810 PLIN1O60240 522 aa7.95□□□□□ -1.14
TOPBP1-201ENST00000260810 THEMISQ8N1K5 641 aaPredicted RBP7.95□□□□□ -1.14
TOPBP1-201ENST00000260810 AK9Q5TCS8 1911 aa7.95□□□□□ -1.14
TOPBP1-201ENST00000260810 PROSER3Q2NL68 480 aa7.95□□□□□ -1.14
TOPBP1-201ENST00000260810 USHBP1Q8N6Y0 703 aa7.95□□□□□ -1.14
TOPBP1-201ENST00000260810 SBF1O95248 1867 aa7.94□□□□□ -1.14
TOPBP1-201ENST00000260810 MYH7P12883 1935 aa7.94□□□□□ -1.14
TOPBP1-201ENST00000260810 IGHDP01880 384 aa7.94□□□□□ -1.14
TOPBP1-201ENST00000260810 PXDNLA1KZ92 1463 aa7.94□□□□□ -1.14
TOPBP1-201ENST00000260810 ADCY9O60503 1353 aa7.94□□□□□ -1.14
TOPBP1-201ENST00000260810 APAF1O14727 1248 aa7.93□□□□□ -1.14
TOPBP1-201ENST00000260810 ONECUT3O60422 494 aaPredicted RBP7.93□□□□□ -1.14
TOPBP1-201ENST00000260810 GCP02774 474 aa7.93□□□□□ -1.14
TOPBP1-201ENST00000260810 BOD1L1Q8NFC6 3051 aa7.93□□□□□ -1.14
TOPBP1-201ENST00000260810 TSR2Q969E8 191 aaKnown RBP7.93□□□□□ -1.14
TOPBP1-201ENST00000260810 SLAIN2Q9P270 581 aa7.93□□□□□ -1.14
TOPBP1-201ENST00000260810 PCDHB15Q9Y5E8 787 aa7.93□□□□□ -1.14
TOPBP1-201ENST00000260810 ATRNO75882 1429 aa7.93□□□□□ -1.14
TOPBP1-201ENST00000260810 LAMB1P07942 1786 aa7.92□□□□□ -1.14
TOPBP1-201ENST00000260810 COL15A1P39059 1388 aa7.92□□□□□ -1.14
TOPBP1-201ENST00000260810 G2E3Q7L622 706 aa7.92□□□□□ -1.14
TOPBP1-201ENST00000260810 NLRP13Q86W25 1043 aa7.92□□□□□ -1.14
TOPBP1-201ENST00000260810 PDGFDQ9GZP0 370 aaPredicted RBP7.92□□□□□ -1.14
TOPBP1-201ENST00000260810 RRP7AQ9Y3A4 280 aaKnown RBP7.92□□□□□ -1.14
TOPBP1-201ENST00000260810 CCDC27Q2M243 656 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms