RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 TCOF1Q13428 1488 aaKnown RBP11.16□□□□□ -0.62
CXCR4-201ENST00000241393 LZTS3O60299 673 aaPredicted RBP11.16□□□□□ -0.62
CXCR4-201ENST00000241393 LINC01559Q495D7 138 aa11.16□□□□□ -0.62
CXCR4-201ENST00000241393 TFIP11Q9UBB9 837 aaKnown RBP11.16□□□□□ -0.62
CXCR4-201ENST00000241393 AKNAQ7Z591 1439 aa11.16□□□□□ -0.62
CXCR4-201ENST00000241393 UACAQ9BZF9 1416 aa11.16□□□□□ -0.62
CXCR4-201ENST00000241393 PDIA4P13667 645 aaKnown RBP11.15□□□□□ -0.62
CXCR4-201ENST00000241393 LMOD1P29536 600 aaPredicted RBP11.15□□□□□ -0.62
CXCR4-201ENST00000241393 NBPF20Q3BBV1 942 aa11.15□□□□□ -0.62
CXCR4-201ENST00000241393 IFFO2Q5TF58 517 aa11.15□□□□□ -0.62
CXCR4-201ENST00000241393 CEP126Q9P2H0 1117 aa11.15□□□□□ -0.62
CXCR4-201ENST00000241393 PTPN23Q9H3S7 1636 aa11.14□□□□□ -0.63
CXCR4-201ENST00000241393 TRIM32Q13049 653 aa11.14□□□□□ -0.63
CXCR4-201ENST00000241393 SH3RF1Q7Z6J0 888 aa11.14□□□□□ -0.63
CXCR4-201ENST00000241393 RNF135Q8IUD6 432 aa11.14□□□□□ -0.63
CXCR4-201ENST00000241393 MMRN1Q13201 1228 aa11.14□□□□□ -0.63
CXCR4-201ENST00000241393 PPP1R18Q6NYC8 613 aa11.14□□□□□ -0.63
CXCR4-201ENST00000241393 FAM174AQ8TBP5 190 aa11.14□□□□□ -0.63
CXCR4-201ENST00000241393 MIA2Q96PC5 1412 aa11.14□□□□□ -0.63
CXCR4-201ENST00000241393 PPEF1O14829 653 aaPredicted RBP11.13□□□□□ -0.63
CXCR4-201ENST00000241393 SKIP12755 728 aa11.13□□□□□ -0.63
CXCR4-201ENST00000241393 RFX1P22670 979 aa11.13□□□□□ -0.63
CXCR4-201ENST00000241393 VARSP26640 1264 aaKnown RBP11.13□□□□□ -0.63
CXCR4-201ENST00000241393 NAIPQ13075 1403 aa11.13□□□□□ -0.63
CXCR4-201ENST00000241393 MAP7D1Q3KQU3 841 aa11.13□□□□□ -0.63
CXCR4-201ENST00000241393 CFAP70Q5T0N1 1121 aa11.13□□□□□ -0.63
CXCR4-201ENST00000241393 EPRSP07814 1512 aaKnown RBP11.12□□□□□ -0.63
CXCR4-201ENST00000241393 PTPRKQ15262 1439 aa11.12□□□□□ -0.63
CXCR4-201ENST00000241393 YTHDC1Q96MU7 727 aaKnown RBP11.12□□□□□ -0.63
CXCR4-201ENST00000241393 UCN2Q96RP3 112 aa11.12□□□□□ -0.63
CXCR4-201ENST00000241393 MAFBQ9Y5Q3 323 aaPredicted RBP11.12□□□□□ -0.63
CXCR4-201ENST00000241393 KIAA0586Q9BVV6 1533 aa11.12□□□□□ -0.63
CXCR4-201ENST00000241393 FOXJ1Q92949 421 aa11.11□□□□□ -0.63
CXCR4-201ENST00000241393 MAGI3Q5TCQ9 1506 aa11.11□□□□□ -0.63
CXCR4-201ENST00000241393 SH3BP2P78314 561 aa11.11□□□□□ -0.63
CXCR4-201ENST00000241393 ERFEQ4G0M1 354 aa11.11□□□□□ -0.63
CXCR4-201ENST00000241393 PLEKHM2Q8IWE5 1019 aa11.11□□□□□ -0.63
CXCR4-201ENST00000241393 TRMT44Q8IYL2 757 aaKnown RBP11.11□□□□□ -0.63
CXCR4-201ENST00000241393 OCSTAMPQ9BR26 566 aa11.11□□□□□ -0.63
CXCR4-201ENST00000241393 CSB-PGBD3P0DP91 1061 aa11.1□□□□□ -0.63
CXCR4-201ENST00000241393 TBC1D9Q6ZT07 1266 aa11.1□□□□□ -0.63
CXCR4-201ENST00000241393 SEPT12Q8IYM1 358 aa11.1□□□□□ -0.63
CXCR4-201ENST00000241393 C1QTNF2Q9BXJ5 285 aa11.1□□□□□ -0.63
CXCR4-201ENST00000241393 VRTNQ9H8Y1 702 aa11.1□□□□□ -0.63
CXCR4-201ENST00000241393 GCC2Q8IWJ2 1684 aa11.08□□□□□ -0.64
CXCR4-201ENST00000241393 USP17L5A8MUK1 530 aa11.08□□□□□ -0.64
CXCR4-201ENST00000241393 SIRT1Q96EB6 747 aa11.08□□□□□ -0.64
CXCR4-201ENST00000241393 SIN3AQ96ST3 1273 aa11.08□□□□□ -0.64
CXCR4-201ENST00000241393 EHBP1Q8NDI1 1231 aa11.08□□□□□ -0.64
CXCR4-201ENST00000241393 KIAA0556O60303 1618 aa11.07□□□□□ -0.64
CXCR4-201ENST00000241393 USP17L3A6NCW0 530 aa11.07□□□□□ -0.64
CXCR4-201ENST00000241393 USP17L4A6NCW7 530 aa11.07□□□□□ -0.64
CXCR4-201ENST00000241393 EML3Q32P44 896 aa11.07□□□□□ -0.64
CXCR4-201ENST00000241393 USP17L2Q6R6M4 530 aa11.07□□□□□ -0.64
CXCR4-201ENST00000241393 USP17L1Q7RTZ2 530 aa11.07□□□□□ -0.64
CXCR4-201ENST00000241393 DISP1Q96F81 1524 aa11.06□□□□□ -0.64
CXCR4-201ENST00000241393 ZNF608Q9ULD9 1512 aaPredicted RBP11.06□□□□□ -0.64
CXCR4-201ENST00000241393 GRIN2AQ12879 1464 aa11.06□□□□□ -0.64
CXCR4-201ENST00000241393 MAGI1Q96QZ7 1491 aaPredicted RBP11.06□□□□□ -0.64
CXCR4-201ENST00000241393 TONSLQ96HA7 1378 aa11.06□□□□□ -0.64
CXCR4-201ENST00000241393 TRIM50Q86XT4 487 aa11.06□□□□□ -0.64
CXCR4-201ENST00000241393 PLPP7Q8NBV4 271 aa11.06□□□□□ -0.64
CXCR4-201ENST00000241393 MAP4K5Q9Y4K4 846 aa11.06□□□□□ -0.64
CXCR4-201ENST00000241393 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.05□□□□□ -0.64
CXCR4-201ENST00000241393 ATP5J2-PTCD1G3V325 749 aa11.05□□□□□ -0.64
CXCR4-201ENST00000241393 DOLKQ9UPQ8 538 aa11.05□□□□□ -0.64
CXCR4-201ENST00000241393 USTQ9Y2C2 406 aa11.05□□□□□ -0.64
CXCR4-201ENST00000241393 EIF4G3O43432 1585 aaKnown RBP11.04□□□□□ -0.64
CXCR4-201ENST00000241393 ROCK1Q13464 1354 aa11.04□□□□□ -0.64
CXCR4-201ENST00000241393 ATG7O95352 703 aa11.04□□□□□ -0.64
CXCR4-201ENST00000241393 LARP1Q6PKG0 1096 aaKnown RBP11.04□□□□□ -0.64
CXCR4-201ENST00000241393 PHTF2Q8N3S3 785 aa11.04□□□□□ -0.64
CXCR4-201ENST00000241393 ESF1Q9H501 851 aaKnown RBP11.04□□□□□ -0.64
CXCR4-201ENST00000241393 CDK13Q14004 1512 aaKnown RBP11.04□□□□□ -0.64
CXCR4-201ENST00000241393 ERCC6Q03468 1493 aa11.03□□□□□ -0.64
CXCR4-201ENST00000241393 PIK3CDO00329 1044 aa11.03□□□□□ -0.64
CXCR4-201ENST00000241393 SLC19A1P41440 591 aa11.03□□□□□ -0.64
CXCR4-201ENST00000241393 ATP1A2P50993 1020 aa11.03□□□□□ -0.64
CXCR4-201ENST00000241393 C4orf48Q5BLP8 95 aa11.03□□□□□ -0.64
CXCR4-201ENST00000241393 PLA2G2CQ5R387 149 aa11.03□□□□□ -0.64
CXCR4-201ENST00000241393 VASH1Q7L8A9 365 aaPredicted RBP11.03□□□□□ -0.64
CXCR4-201ENST00000241393 TRAIPQ9BWF2 469 aa11.03□□□□□ -0.64
CXCR4-201ENST00000241393 NOD1Q9Y239 953 aa11.03□□□□□ -0.64
CXCR4-201ENST00000241393 RBM19Q9Y4C8 960 aaKnown RBP11.02□□□□□ -0.64
CXCR4-201ENST00000241393 RAPGEF6Q8TEU7 1601 aa11.02□□□□□ -0.65
CXCR4-201ENST00000241393 NUP153P49790 1475 aaKnown RBP11.01□□□□□ -0.65
CXCR4-201ENST00000241393 GIGYF1O75420 1035 aaPredicted RBP11.01□□□□□ -0.65
CXCR4-201ENST00000241393 RC3H1Q5TC82 1133 aaKnown RBP11.01□□□□□ -0.65
CXCR4-201ENST00000241393 RETREG2Q8NC44 543 aa11.01□□□□□ -0.65
CXCR4-201ENST00000241393 KCTD15Q96SI1 283 aaPredicted RBP11.01□□□□□ -0.65
CXCR4-201ENST00000241393 PLA2G2EQ9NZK7 142 aa11.01□□□□□ -0.65
CXCR4-201ENST00000241393 CHIC2Q9UKJ5 165 aa11.01□□□□□ -0.65
CXCR4-201ENST00000241393 CDK11AQ9UQ88 783 aaPredicted RBP11.01□□□□□ -0.65
CXCR4-201ENST00000241393 SYNJ2O15056 1496 aa11.01□□□□□ -0.65
CXCR4-201ENST00000241393 ESPNB1AK53 854 aa11.01□□□□□ -0.65
CXCR4-201ENST00000241393 DHX9Q08211 1270 aaKnown RBP11.01□□□□□ -0.65
CXCR4-201ENST00000241393 MPNDQ8N594 471 aa11.01□□□□□ -0.65
CXCR4-201ENST00000241393 KCTD17Q8N5Z5 321 aa11.01□□□□□ -0.65
CXCR4-201ENST00000241393 PATL2C9JE40 543 aaKnown RBP11□□□□□ -0.65
CXCR4-201ENST00000241393 MYCP01106 439 aaPredicted RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms