RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 TTC25Q96NG3 672 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 CCDC3Q9BQI4 270 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 ZCCHC2Q9C0B9 1178 aaKnown RBP16.65■□□□□ 0.26
TRIM28-215ENST00000601150 EIF2B3Q9NR50 452 aaKnown RBP16.65■□□□□ 0.26
TRIM28-215ENST00000601150 SMARCAL1Q9NZC9 954 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 CLCA2Q9UQC9 943 aa16.65■□□□□ 0.26
TRIM28-215ENST00000601150 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.65■□□□□ 0.26
TRIM28-215ENST00000601150 AKAP13Q12802 2813 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 GOLGA6L10A0A0M3HER8 536 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 KMOO15229 486 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 ZNF185O15231 689 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 GPR39O43194 453 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 MT-CO3P00414 261 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 BASP1P80723 227 aaKnown RBP16.64■□□□□ 0.25
TRIM28-215ENST00000601150 TMPRSS15P98073 1019 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 XIAPP98170 497 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 TMEM115Q12893 351 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-215ENST00000601150 CERCAMQ5T4B2 595 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 GPRC6AQ5T6X5 926 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 TTC27Q6P3X3 843 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 CRTC3Q6UUV7 619 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 C17orf82Q86X59 251 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-215ENST00000601150 MARCH9Q86YJ5 346 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 WDR48Q8TAF3 677 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 STYXQ8WUJ0 223 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 GATA6Q92908 595 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 DNAJC1Q96KC8 554 aaKnown RBP16.64■□□□□ 0.25
TRIM28-215ENST00000601150 ASB8Q9H765 288 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 CASS4Q9NQ75 786 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 NLE1Q9NVX2 485 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-215ENST00000601150 KCNK6Q9Y257 313 aa16.64■□□□□ 0.25
TRIM28-215ENST00000601150 MROH6A6NGR9 719 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 NUDT21O43809 227 aaKnown RBP16.63■□□□□ 0.25
TRIM28-215ENST00000601150 ECEL1O95672 775 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 PNLIPP16233 465 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 ITGALP20701 1170 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 CA5AP35218 305 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 COILP38432 576 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-215ENST00000601150 CLCNKAP51800 687 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 MAZP56270 477 aaKnown RBP16.63■□□□□ 0.25
TRIM28-215ENST00000601150 TARDBPQ13148 414 aaKnown RBP eCLIP16.63■□□□□ 0.25
TRIM28-215ENST00000601150 NFATC2Q13469 925 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 LAMB3Q13751 1172 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 CDCP2Q5VXM1 449 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 UNQ6494/PRO21346Q6UXR6 183 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 NAGSQ8N159 534 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 DCBLD1Q8N8Z6 715 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 ULK4Q96C45 1275 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 CNTNAP3BQ96NU0 1288 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 TIMM29Q9BSF4 260 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 TMEM121BQ9BXQ6 578 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-215ENST00000601150 CNTNAP3Q9BZ76 1288 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 LRIT1Q9P2V4 623 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 SLC30A1Q9Y6M5 507 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 RNF215Q9Y6U7 377 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 CHD8Q9HCK8 2581 aa16.63■□□□□ 0.25
TRIM28-215ENST00000601150 HEATR9A2RTY3 570 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 AGAP14A8MT82 685 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 H7C0S8 307 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 CCL22O00626 93 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 PHF2O75151 1096 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 KRT14P02533 472 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 ZNF7P17097 686 aaPredicted RBP16.62■□□□□ 0.25
TRIM28-215ENST00000601150 MSH3P20585 1137 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 PSMA3P25788 255 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 AKT1P31749 480 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 GRIA1P42261 906 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 BIRC2Q13490 618 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 TRIP13Q15645 432 aaPredicted RBP16.62■□□□□ 0.25
TRIM28-215ENST00000601150 INSCQ1MX18 579 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 SKIDA1Q1XH10 827 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 PLA2G4EQ3MJ16 856 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 GPR33Q49SQ1 333 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 PAPD7Q5XG87 772 aaKnown RBP16.62■□□□□ 0.25
TRIM28-215ENST00000601150 CCDC137Q6PK04 289 aaKnown RBP16.62■□□□□ 0.25
TRIM28-215ENST00000601150 SNX20Q7Z614 316 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 TRAPPC5Q8IUR0 188 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 ZNF547Q8IVP9 402 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 ARL14Q8N4G2 192 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 RASGEF1AQ8N9B8 481 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 PATE1Q8WXA2 126 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 DEPDC7Q96QD5 511 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 RANBP9Q96S59 729 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 NAPGQ99747 312 aaPredicted RBP16.62■□□□□ 0.25
TRIM28-215ENST00000601150 KLC4Q9NSK0 619 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 TBC1D29Q9UFV1 150 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 RABGEF1Q9UJ41 708 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 CRLS1Q9UJA2 301 aa16.62■□□□□ 0.25
TRIM28-215ENST00000601150 BPTFQ12830 3046 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-215ENST00000601150 CTAGE9A4FU28 777 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 RHPN2P1A8MT19 583 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 C1QTNF9BB2RNN3 333 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 AP3B1O00203 1094 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 SNX2O60749 519 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 TCEA3O75764 348 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 C1QTNF9P0C862 333 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 SLC2A4P14672 509 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 ADRA1DP25100 572 aa16.61■□□□□ 0.25
TRIM28-215ENST00000601150 MC4RP32245 332 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms