RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 RXFP2Q8WXD0 754 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 RSC1A1Q92681 617 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 SCRN2Q96FV2 425 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 ZNF514Q96K75 400 aaPredicted RBP17.77■□□□□ 0.44
CLK3-227ENST00000570296 SPATA32Q96LK8 384 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 MCCC1Q96RQ3 725 aaPredicted RBP17.77■□□□□ 0.44
CLK3-227ENST00000570296 FGF21Q9NSA1 209 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 CD84Q9UIB8 345 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 ACANP16112 2415 aa17.77■□□□□ 0.43
CLK3-227ENST00000570296 ZNF469Q96JG9 3925 aaPredicted RBP17.76■□□□□ 0.43
CLK3-227ENST00000570296 ARHGAP42A6NI28 874 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 SCRG1O75711 98 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 JCHAINP01591 159 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 SLC9A1P19634 815 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 TNFAIP3P21580 790 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 RENBPP51606 427 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 KCNAB1Q14722 419 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 ANO6Q4KMQ2 910 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 IRGCQ6NXR0 463 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 TSPAN33Q86UF1 283 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 RAB43Q86YS6 212 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 TRIM48Q8IWZ4 208 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 FAR1Q8WVX9 515 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 SCAMP4Q969E2 229 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 AGAP3Q96P47 875 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 GOLPH3LQ9H4A5 285 aa17.76■□□□□ 0.43
CLK3-227ENST00000570296 SPTBP11277 2137 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 IGHV5-51A0A0C4DH38 117 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 C2CD4BA6NLJ0 364 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 FOXN3O00409 490 aaPredicted RBP17.75■□□□□ 0.43
CLK3-227ENST00000570296 CREB3O43889 395 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 NADKO95544 446 aaPredicted RBP17.75■□□□□ 0.43
CLK3-227ENST00000570296 EBLN1P0CF75 366 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 PPP1R2P41236 205 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 PAPOLAP51003 745 aaKnown RBP17.75■□□□□ 0.43
CLK3-227ENST00000570296 APBA1Q02410 837 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 RFLNAQ6ZTI6 216 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 USP45Q70EL2 814 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 KMT5CQ86Y97 462 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 TMEM126BQ8IUX1 230 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 GALNT16Q8N428 558 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 ZNF808Q8N4W9 903 aaPredicted RBP17.75■□□□□ 0.43
CLK3-227ENST00000570296 AOPEPQ8N6M6 819 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 CLEC1AQ8NC01 280 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 OR8K5Q8NH50 307 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 GPT2Q8TD30 523 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 COG1Q8WTW3 980 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 FAM172AQ8WUF8 416 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 IP6K3Q96PC2 410 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 PSKH2Q96QS6 385 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 ZNF552Q9H707 407 aaPredicted RBP17.75■□□□□ 0.43
CLK3-227ENST00000570296 PCDHGC4Q9Y5F7 938 aa17.75■□□□□ 0.43
CLK3-227ENST00000570296 A0A1W2PQJ5 194 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 SMC2O95347 1197 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 ATP1A1P05023 1023 aaKnown RBP17.74■□□□□ 0.43
CLK3-227ENST00000570296 CYP11B1P15538 503 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 SLC19A1P41440 591 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 TSFMP43897 325 aaKnown RBP17.74■□□□□ 0.43
CLK3-227ENST00000570296 KRTAP10-9P60411 292 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 TUBB4BP68371 445 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 TUBB2AQ13885 445 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 FAM69BQ5VUD6 431 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 GBP6Q6ZN66 633 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 RBM12BQ8IXT5 1001 aaKnown RBP17.74■□□□□ 0.43
CLK3-227ENST00000570296 FAM71AQ8IYT1 594 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 DSELQ8IZU8 1212 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 CELF6Q96J87 481 aaKnown RBP17.74■□□□□ 0.43
CLK3-227ENST00000570296 FER1L6-AS2Q96M78 137 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 PCMTD1Q96MG8 357 aaPredicted RBP17.74■□□□□ 0.43
CLK3-227ENST00000570296 TRAPPC9Q96Q05 1148 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 AGAP2Q99490 1192 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 WDR77Q9BQA1 342 aaPredicted RBP17.74■□□□□ 0.43
CLK3-227ENST00000570296 MLPHQ9BV36 600 aaPredicted RBP17.74■□□□□ 0.43
CLK3-227ENST00000570296 TUBB2BQ9BVA1 445 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 POT1Q9NUX5 634 aa17.74■□□□□ 0.43
CLK3-227ENST00000570296 SCHIP1Q9P0W5 487 aaPredicted RBP17.74■□□□□ 0.43
CLK3-227ENST00000570296 SUCOQ9UBS9 1254 aaKnown RBP17.74■□□□□ 0.43
CLK3-227ENST00000570296 FAM170AA1A519 330 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 K7ELQ4 463 aaPredicted RBP17.73■□□□□ 0.43
CLK3-227ENST00000570296 MEN1O00255 615 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 KCNN4O15554 427 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 IGHEP01854 428 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 HTR7P34969 479 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 CA5AP35218 305 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 SMTNL2Q2TAL5 461 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 PLEKHS1Q5SXH7 462 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 LCN10Q6JVE6 187 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 MRGPRGQ86SM5 289 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 SLC38A9Q8NBW4 561 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 SLX1AQ9BQ83 275 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 SLC39A8Q9C0K1 460 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 SP110Q9HB58 689 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 ZNF624Q9P2J8 865 aaPredicted RBP17.73■□□□□ 0.43
CLK3-227ENST00000570296 NOVA2Q9UNW9 492 aaKnown RBP17.73■□□□□ 0.43
CLK3-227ENST00000570296 PPIL1Q9Y3C6 166 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 GTF3C3Q9Y5Q9 886 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 CACNA1CQ13936 2221 aa17.73■□□□□ 0.43
CLK3-227ENST00000570296 PCM1Q15154 2024 aa17.72■□□□□ 0.43
CLK3-227ENST00000570296 BICDL2A1A5D9 508 aa17.72■□□□□ 0.43
CLK3-227ENST00000570296 PNMA6AP0CW24 399 aaPredicted RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms