RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SLC26A2P50443 739 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 FBXW4P57775 412 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 PYDC2Q56P42 97 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 UGT3A1Q6NUS8 523 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 C16orf62Q7Z3J2 963 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 MAVSQ7Z434 540 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 OR8H1Q8NGG4 311 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 STAG3L4Q8TBR4 150 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 STON2Q8WXE9 905 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 VAT1Q99536 393 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 CCM2LQ9NUG4 571 aaPredicted RBP14.14□□□□□ -0.15
LIMS1-215ENST00000544547 MKS1Q9NXB0 559 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 TCAF1Q9Y4C2 921 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 SNX10Q9Y5X0 201 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 URB1O60287 2271 aaKnown RBP14.14□□□□□ -0.15
LIMS1-215ENST00000544547 COL14A1Q05707 1796 aaKnown RBP14.14□□□□□ -0.15
LIMS1-215ENST00000544547 UBR2Q8IWV8 1755 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 NPHS1O60500 1241 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 UMPSP11172 480 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF26P17031 533 aaPredicted RBP14.14□□□□□ -0.15
LIMS1-215ENST00000544547 MATKP42679 507 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 HLCSP50747 726 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 CLCN5P51795 746 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 SRP54P61011 504 aaKnown RBP14.14□□□□□ -0.15
LIMS1-215ENST00000544547 INTS11Q5TA45 600 aaKnown RBP14.14□□□□□ -0.15
LIMS1-215ENST00000544547 HECTD2Q5U5R9 776 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 DET1Q7L5Y6 550 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 PLEKHH3Q7Z736 793 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 B3GALNT2Q8NCR0 500 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 PIK3C3Q8NEB9 887 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 TFAP2CQ92754 450 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 ASB2Q96Q27 587 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 CCDC162PA2VCL2 907 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 AQP9O43315 295 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 VPS4BO75351 444 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 JUNP05412 331 aaKnown RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ABCB1P08183 1280 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ICAM3P32942 547 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 MAP2K4P45985 399 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 OAZ1P54368 228 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ARSFP54793 590 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 MXD1Q05195 221 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 CDH18Q13634 790 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 INO80DQ53TQ3 878 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 MARC1Q5VT66 337 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 PGBD3Q8N328 593 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ASCC1Q8N9N2 400 aaKnown RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ZFP90Q8TF47 636 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 BIRC7Q96CA5 298 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 SNX27Q96L92 541 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 TTYH2Q9BSA4 534 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ADPRHL2Q9NX46 363 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 KLQ9UEF7 1012 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 GON4LQ3T8J9 2241 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 TCAF2A6NFQ2 919 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 C9IYK1 514 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 UBXN8O00124 270 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF177Q13360 481 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 SF3B4Q15427 424 aaKnown RBP eCLIP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF284Q2VY69 593 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ELMOD2Q8IZ81 293 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 TXNDC5Q8NBS9 432 aaKnown RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 FBXO32Q969P5 355 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 TRMOQ9BU70 441 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 TNFSF13BQ9Y275 285 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 POLR3HQ9Y535 204 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 PLCH1Q4KWH8 1693 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 TMEM221A6NGB7 291 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 A8MT66 165 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 BCAS1O75363 584 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ENDOD1O94919 500 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 INMTO95050 263 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 KRT6BP04259 564 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 THP07101 528 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 POLR2EP19388 210 aaKnown RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 CD247P20963 164 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 CD86P42081 329 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 CHRNA4P43681 627 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 PPP3CCP48454 512 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 SLC11A2P49281 568 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 PRIM2P49643 509 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 TPRG1LQ5T0D9 272 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 PLET1Q6UQ28 207 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ZC3HC1Q86WB0 502 aaKnown RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 HASPINQ8TF76 798 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 HDAC2Q92769 488 aaKnown RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 TMEM106CQ9BVX2 250 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 RMND5AQ9H871 391 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 PDGFCQ9NRA1 345 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 PDP1Q9P0J1 537 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 PCDHGA7Q9Y5G6 932 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 MAFBQ9Y5Q3 323 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 PTGDR2Q9Y5Y4 395 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 KLRG2A4D1S0 409 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 CKMP06732 381 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 TSPAN19P0C672 248 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ARF4P18085 180 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 GLDCP23378 1020 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 SLC1A2P43004 574 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms