RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 ADGRG3Q86Y34 549 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 ZDHHC13Q8IUH4 622 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 BBS7Q8IWZ6 715 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 KDM1BQ8NB78 822 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 HMGCLL1Q8TB92 370 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 SLC38A4Q969I6 547 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 FAM84BQ96KN1 310 aaPredicted RBP12.35□□□□□ -0.43
USP3-203ENST00000538686 SLC30A3Q99726 388 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 SPATA9Q9BWV2 254 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 TRIM54Q9BYV2 358 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 SLC22A4Q9H015 551 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 MTMR10Q9NXD2 777 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 ZNF224Q9NZL3 707 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 GMPR2Q9P2T1 348 aaKnown RBP12.35□□□□□ -0.43
USP3-203ENST00000538686 SRRDQ9UH36 339 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 ADGRE2Q9UHX3 823 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 CNTN6Q9UQ52 1028 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 DOT1LQ8TEK3 1739 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 E5RI56 91 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 AXIN1O15169 862 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 RGS5O15539 181 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 LTFP02788 710 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 C2P06681 752 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 ADORA3P0DMS8 318 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 SOX6P35712 828 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 CENPAP49450 140 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 LIMK2P53671 638 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 ISL1P61371 349 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 CD83Q01151 205 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 SLAMF1Q13291 335 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 KCNC3Q14003 757 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 TAF12Q16514 161 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 CTU2Q2VPK5 515 aaKnown RBP12.34□□□□□ -0.43
USP3-203ENST00000538686 RFX4Q33E94 735 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 ZNF691Q5VV52 312 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 CES5AQ6NT32 575 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 LAYNQ6UX15 382 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 SCARA5Q6ZMJ2 495 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 CCDC190Q86UF4 302 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 CBWD2Q8IUF1 395 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 MPP5Q8N3R9 675 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 EMC1Q8N766 993 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 ENKURQ8TC29 256 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 SPPL2BQ8TCT7 592 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 AKAP1Q92667 903 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP3-203ENST00000538686 PTP4A1Q93096 173 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 FBXW5Q969U6 566 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 RBBP8Q99708 897 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 RBM4BQ9BQ04 359 aaKnown RBP12.34□□□□□ -0.43
USP3-203ENST00000538686 RBM4Q9BWF3 364 aaKnown RBP12.34□□□□□ -0.43
USP3-203ENST00000538686 UGT2B28Q9BY64 529 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.34□□□□□ -0.43
USP3-203ENST00000538686 SPNS1Q9H2V7 528 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 FAM83DQ9H4H8 585 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 DUSP21Q9H596 190 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 MEAF6Q9HAF1 191 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 ZNF358Q9NW07 568 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 EGFL7Q9UHF1 273 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 NUFIP1Q9UHK0 495 aaKnown RBP12.34□□□□□ -0.43
USP3-203ENST00000538686 C3orf18Q9UK00 162 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 TRHDEQ9UKU6 1024 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 SIPA1L1O43166 1804 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 NUP98P52948 1817 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 KPNA6O60684 536 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 PDE9AO76083 593 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 RETP07949 1114 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 PCSK2P16519 638 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 MAOBP27338 520 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 GBX2P52951 348 aaPredicted RBP12.34□□□□□ -0.43
USP3-203ENST00000538686 PPP4CP60510 307 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 FLI1Q01543 452 aaPredicted RBP12.34□□□□□ -0.43
USP3-203ENST00000538686 UBE3AQ05086 875 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 SMTNL2Q2TAL5 461 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 HSDL1Q3SXM5 330 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 SMYD5Q6GMV2 418 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 ILDR2Q71H61 639 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 SYVN1Q86TM6 617 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 CDH26Q8IXH8 852 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 PLD6Q8N2A8 252 aaKnown RBP12.34□□□□□ -0.43
USP3-203ENST00000538686 SVOPLQ8N434 492 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 CCNYL1Q8N7R7 359 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 HYLS1Q96M11 299 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 TEKT5Q96M29 485 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 IER2Q9BTL4 223 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 COQ3Q9NZJ6 369 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 PCDH10Q9P2E7 1040 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 MORF4L1Q9UBU8 362 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 SRP68Q9UHB9 627 aaKnown RBP12.34□□□□□ -0.43
USP3-203ENST00000538686 NARFQ9UHQ1 456 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 MAN2B2Q9Y2E5 1009 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 KLHL20Q9Y2M5 609 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 FOCADQ5VW36 1801 aa12.34□□□□□ -0.43
USP3-203ENST00000538686 A0A1B0GVM2 712 aa12.33□□□□□ -0.44
USP3-203ENST00000538686 TISP43B9A030 160 aa12.33□□□□□ -0.44
USP3-203ENST00000538686 BTN3A3O00478 584 aa12.33□□□□□ -0.44
USP3-203ENST00000538686 AIREO43918 545 aa12.33□□□□□ -0.44
USP3-203ENST00000538686 SSX4O60224 188 aa12.33□□□□□ -0.44
USP3-203ENST00000538686 SLC2A3P11169 496 aa12.33□□□□□ -0.44
USP3-203ENST00000538686 BTF3P20290 206 aaKnown RBP12.33□□□□□ -0.44
USP3-203ENST00000538686 HOXA1P49639 335 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms