RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TRIB3Q96RU7 358 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 ACOX2Q99424 681 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 GPR21Q99679 349 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 UBA2Q9UBT2 640 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 TMCO1Q9UM00 188 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 SCN5AQ14524 2016 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 PRRC2BQ5JSZ5 2229 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 NPEPPSL1A6NEC2 478 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 J3QRK9 145 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 NIPSNAP2O75323 286 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 EEF1DP29692 281 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 CORO1AP31146 461 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 MAPKAPK2P49137 400 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 OXCT1P55809 520 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 YBEYP58557 167 aaPredicted RBP16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 CYP51A1Q16850 503 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 TMCO2Q7Z6W1 182 aaPredicted RBP16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 AFAP1L2Q8N4X5 818 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 DLG3Q92796 817 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 PBXIP1Q96AQ6 731 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 FBXL8Q96CD0 374 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 CCDC97Q96F63 343 aaPredicted RBP16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 AARSD1Q9BTE6 412 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 PAIP1Q9H074 479 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 TUBB1Q9H4B7 451 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 FKBPLQ9UIM3 349 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 CASP8AP2Q9UKL3 1982 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 C2orf78A6NCI8 922 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 TRIM24O15164 1050 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 SLC22A2O15244 555 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 CLASP2O75122 1294 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 ATE1O95260 518 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 NDST3O95803 873 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 PRLP01236 227 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 CCL23P55773 120 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 PIGFQ07326 219 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 OR6K2Q8NGY2 324 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 TWIST2Q8WVJ9 160 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 C12orf43Q96C57 262 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 TTPALQ9BTX7 342 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 RNF38Q9H0F5 515 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 ARMC7Q9H6L4 198 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 MAP10Q9P2G4 905 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 DNMT3LQ9UJW3 386 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 RNF112Q9ULX5 631 aa16.4■□□□□ 0.22
CCDC88B-210ENST00000494566 H3BNC9 293 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 MAN1A2O60476 641 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 CRCPO75575 148 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 HSPA1AP0DMV8 641 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 HSPA1BP0DMV9 641 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 ACVR1Q04771 509 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 PTPRNQ16849 979 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 LHX8Q68G74 356 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 OGFOD2Q6N063 350 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 GPR141Q7Z602 305 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 CARM1Q86X55 608 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 SIDT2Q8NBJ9 832 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 ZNF597Q96LX8 424 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 CDK15Q96Q40 435 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 ATOH8Q96SQ7 321 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 SCUBE2Q9NQ36 999 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 SRRDQ9UH36 339 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 ASB1Q9Y576 335 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 ANGPT2O15123 496 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 SEC24AO95486 1093 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 RHOCP08134 193 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 ZDHHC11BP0C7U3 371 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 HGFP14210 728 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 SELPP16109 830 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 ADSLP30566 484 aaPredicted RBP16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 RING1Q06587 406 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 ATP1A4Q13733 1029 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 FGD3Q5JSP0 725 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 UGT3A1Q6NUS8 523 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 CMTR2Q8IYT2 770 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 FATE1Q969F0 183 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 L3HYPDHQ96EM0 354 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 MGME1Q9BQP7 344 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 DHRS12A0PJE2 317 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 BTN3A1O00481 513 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 INSIG1O15503 277 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 KCNH1O95259 989 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 PRAMEF12O95522 483 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 SNAP29O95721 258 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 GGT5P36269 586 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 ZNF140P52738 457 aaPredicted RBP16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 NAA20P61599 178 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 BNIP3Q12983 259 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 PMS2P3Q13401 168 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 ANKRD34AQ69YU3 496 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 TMEM214Q6NUQ4 689 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 DEFB128Q7Z7B8 93 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 FAR2Q96K12 515 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 HAUS8Q9BT25 410 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 POLR1BQ9H9Y6 1135 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 SEPT3Q9UH03 358 aa16.39■□□□□ 0.21
CCDC88B-210ENST00000494566 TBC1D4O60343 1298 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 NDUFS3O75489 264 aa16.38■□□□□ 0.21
CCDC88B-210ENST00000494566 INHAP05111 366 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms