RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 CDK4P11802 303 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 GM2AP17900 193 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 PSMA3P25788 255 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 MGAT1P26572 445 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 MC4RP32245 332 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 ITGA8P53708 1063 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 TMPRSS15P98073 1019 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 BIRC2Q13490 618 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 PTPRRQ15256 657 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 ATP13A5Q4VNC0 1218 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 CCDC38Q502W7 563 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 PRRT3Q5FWE3 981 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 FAM182AQ5T1J6 154 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 RNF187Q5TA31 235 aaPredicted RBP8.19□□□□□ -1.1
SF3A1-208ENST00000485618 HIBCHQ6NVY1 386 aaPredicted RBP8.19□□□□□ -1.1
SF3A1-208ENST00000485618 CAND1Q86VP6 1230 aaKnown RBP8.19□□□□□ -1.1
SF3A1-208ENST00000485618 SPATS2Q86XZ4 545 aaKnown RBP8.19□□□□□ -1.1
SF3A1-208ENST00000485618 IFT20Q8IY31 132 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 PHACTR4Q8IZ21 702 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 OTUD6BQ8N6M0 293 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 KDF1Q8NAX2 398 aaPredicted RBP8.19□□□□□ -1.1
SF3A1-208ENST00000485618 AVL9Q8NBF6 648 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 OR6C4Q8NGE1 309 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 LMX1AQ8TE12 382 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 RHBDD1Q8TEB9 315 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 HDAC10Q969S8 669 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 EID2BQ96D98 161 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 STAMBPL1Q96FJ0 436 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 COX14Q96I36 57 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 DNAJC1Q96KC8 554 aaKnown RBP8.19□□□□□ -1.1
SF3A1-208ENST00000485618 TMEM121BQ9BXQ6 578 aaPredicted RBP8.19□□□□□ -1.1
SF3A1-208ENST00000485618 CARS2Q9HA77 564 aaKnown RBP8.19□□□□□ -1.1
SF3A1-208ENST00000485618 CYP4F12Q9HCS2 524 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 CHRAC1Q9NRG0 131 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 GPR27Q9NS67 375 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 PIH1D1Q9NWS0 290 aaKnown RBP8.19□□□□□ -1.1
SF3A1-208ENST00000485618 FKBPLQ9UIM3 349 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 GPR34Q9UPC5 381 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 WASF3Q9UPY6 502 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 SLC17A4Q9Y2C5 497 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 SNX24Q9Y343 169 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 GPSM3Q9Y4H4 160 aa8.19□□□□□ -1.1
SF3A1-208ENST00000485618 DNMT3AQ9Y6K1 912 aaPredicted RBP8.19□□□□□ -1.1
SF3A1-208ENST00000485618 CNOT1A5YKK6 2376 aaKnown RBP8.19□□□□□ -1.1
SF3A1-208ENST00000485618 A0A0U1RQS6 177 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 TMEM202A6NGA9 273 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 LMO7DNF2Z398 122 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 H3BMM5 538 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 GRID2O43424 1007 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 NUAK1O60285 661 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 NDUFS3O75489 264 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 PIAS2O75928 621 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 AP2A2O94973 939 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 CEACAM5P06731 702 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 ZNF7P17097 686 aaPredicted RBP8.18□□□□□ -1.1
SF3A1-208ENST00000485618 PGAM1P18669 254 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 DGKAP23743 735 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 EPHA8P29322 1005 aaPredicted RBP8.18□□□□□ -1.1
SF3A1-208ENST00000485618 GRIA1P42261 906 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 GNPDA1P46926 289 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 PLTPP55058 493 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 SIM1P81133 766 aaPredicted RBP8.18□□□□□ -1.1
SF3A1-208ENST00000485618 GUCY2DQ02846 1103 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 ACVR1Q04771 509 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 TMEM115Q12893 351 aaPredicted RBP8.18□□□□□ -1.1
SF3A1-208ENST00000485618 MSLNQ13421 630 aaPredicted RBP8.18□□□□□ -1.1
SF3A1-208ENST00000485618 OLIG2Q13516 323 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 CUL1Q13616 776 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 ITIH4Q14624 930 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 LONRF1Q17RB8 773 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 ALG11Q2TAA5 492 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 BBS9Q3SYG4 887 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 SPANXN3Q5MJ09 141 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 DUPD1Q68J44 220 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 DOK6Q6PKX4 331 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 LAYNQ6UX15 382 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 RFLNAQ6ZTI6 216 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 TAF8Q7Z7C8 310 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 LRRTM4Q86VH4 590 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 LRRC6Q86X45 466 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 TRAPPC5Q8IUR0 188 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 PALM2Q8IXS6 379 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 SLC22A18ASQ8N1D0 253 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 NXPE1Q8N323 547 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 DDHD1Q8NEL9 900 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 OR13C4Q8NGS5 318 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 GSDMBQ8TAX9 411 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 SAP25Q8TEE9 199 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 PYROXD1Q8WU10 500 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 GATA6Q92908 595 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 TSACCQ96A04 125 aaPredicted RBP8.18□□□□□ -1.1
SF3A1-208ENST00000485618 SCARF2Q96GP6 870 aaPredicted RBP8.18□□□□□ -1.1
SF3A1-208ENST00000485618 OR2M4Q96R27 311 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 EBNA1BP2Q99848 306 aaKnown RBP8.18□□□□□ -1.1
SF3A1-208ENST00000485618 TRIM51Q9BSJ1 452 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 PHACTR1Q9C0D0 580 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 OR2AG1Q9H205 316 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 STN1Q9H668 368 aaKnown RBP8.18□□□□□ -1.1
SF3A1-208ENST00000485618 CATSPERZQ9NTU4 200 aa8.18□□□□□ -1.1
SF3A1-208ENST00000485618 ZDHHC3Q9NYG2 299 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms