RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PRR5-ARHGAP8B1AHC4 643 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 C1QAP02745 245 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 WNT1P04628 370 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 F7P08709 466 aaPredicted RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 RALBP11234 206 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 ZNF7P17097 686 aaPredicted RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 HTR1BP28222 390 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 AKT1P31749 480 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 THOP1P52888 689 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 KIAA1024LP59773 190 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 MPP1Q00013 466 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 OVGP1Q12889 678 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 TMEM115Q12893 351 aaPredicted RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 PDE1CQ14123 709 aaPredicted RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 NFATC4Q14934 902 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 EFTUD2Q15029 972 aaKnown RBP eCLIP12.11□□□□□ -0.47
SDC1-206ENST00000482879 TEAD4Q15561 434 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 TYSND1Q2T9J0 566 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 KHDC1Q4VXA5 237 aaKnown RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 BEND6Q5SZJ8 279 aaPredicted RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 ENPP7Q6UWV6 458 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 LAYNQ6UX15 382 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 KIAA0408Q6ZU52 694 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 ADGRG6Q86SQ4 1221 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 IQCHQ86VS3 1027 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 DCP2Q8IU60 420 aaKnown RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 SYT12Q8IV01 421 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 RBFAQ8N0V3 343 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 HNRNPLLQ8WVV9 542 aaKnown RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 SCG3Q8WXD2 468 aaKnown RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 SKA1Q96BD8 255 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 MRRFQ96E11 262 aaKnown RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 WDR92Q96MX6 357 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 BOCQ9BWV1 1114 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 IRF2BPLQ9H1B7 796 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 OR2AG1Q9H205 316 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 ACSS3Q9H6R3 686 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 FBXO6Q9NRD1 293 aaPredicted RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 TMEM74BQ9NUR3 256 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 INTS10Q9NVR2 710 aaKnown RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 NSMCE4AQ9NXX6 385 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 SUSD2Q9UGT4 822 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 PILRBQ9UKJ0 227 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 VPS9D1Q9Y2B5 631 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 ZFC3H1O60293 1989 aaKnown RBP12.1□□□□□ -0.47
SDC1-206ENST00000482879 ADAMTS9Q9P2N4 1935 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 IGLV3-16A0A075B6K0 115 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 UBA6A0AVT1 1052 aaPredicted RBP12.1□□□□□ -0.47
SDC1-206ENST00000482879 TMEM202A6NGA9 273 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 CFAP99D6REC4 459 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 TLR4O00206 839 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 VEGFDO43915 354 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 OR1I1O60431 355 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 MAGEC1O60732 1142 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 CDK14O94921 469 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 HAUS5O94927 633 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 KELP23276 732 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 DPP6P42658 865 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 LEPRP48357 1165 aaKnown RBP12.1□□□□□ -0.47
SDC1-206ENST00000482879 POLD2P49005 469 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 CSNK1EP49674 416 aaKnown RBP12.1□□□□□ -0.47
SDC1-206ENST00000482879 AFF3P51826 1226 aaKnown RBP12.1□□□□□ -0.47
SDC1-206ENST00000482879 C21orf59P57076 290 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 B4GALNT1Q00973 533 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 NAB1Q13506 487 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 GTF2H3Q13889 308 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 PTK2BQ14289 1009 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 KLHL38Q2WGJ6 581 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 ZNF789Q5FWF6 425 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 TPRG1LQ5T0D9 272 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 RNF187Q5TA31 235 aaPredicted RBP12.1□□□□□ -0.47
SDC1-206ENST00000482879 MARK2Q7KZI7 788 aaKnown RBP12.1□□□□□ -0.47
SDC1-206ENST00000482879 STRA8Q7Z7C7 330 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 SLC26A11Q86WA9 606 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 LRRC6Q86X45 466 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 ATOH1Q92858 354 aaPredicted RBP12.1□□□□□ -0.47
SDC1-206ENST00000482879 CCDC97Q96F63 343 aaPredicted RBP12.1□□□□□ -0.47
SDC1-206ENST00000482879 LOXL4Q96JB6 756 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 CPNE1Q99829 537 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 CCDC77Q9BR77 488 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 ZCCHC2Q9C0B9 1178 aaKnown RBP12.1□□□□□ -0.47
SDC1-206ENST00000482879 CLPBQ9H078 707 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 VPS18Q9P253 973 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 TXNDC16Q9P2K2 825 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 ATXN10Q9UBB4 475 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 MOSPD1Q9UJG1 213 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 CRYL1Q9Y2S2 319 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 PSAT1Q9Y617 370 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 MUC6Q6W4X9 2439 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 TMEM131Q92545 1883 aa12.1□□□□□ -0.47
SDC1-206ENST00000482879 EXOC1LA0A1B0GW35 172 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 POC1B-GALNT4F8VUJ3 575 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 PRMT5O14744 637 aaPredicted RBP12.09□□□□□ -0.47
SDC1-206ENST00000482879 VILLO15195 856 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 AHSGP02765 367 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 SHBGP04278 402 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 CEACAM5P06731 702 aa12.09□□□□□ -0.47
SDC1-206ENST00000482879 ATP1B2P14415 290 aaPredicted RBP12.09□□□□□ -0.47
SDC1-206ENST00000482879 H2AFXP16104 143 aaPredicted RBP12.09□□□□□ -0.47
SDC1-206ENST00000482879 ZNF8P17098 575 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms