RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 GATAD2BQ8WXI9 593 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 DPYSL5Q9BPU6 564 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 SNRNP25Q9BV90 132 aaKnown RBP13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ITSN1Q15811 1721 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 A0A1W2PQH9 124 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 SEMA3DO95025 777 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 PGLSO95336 258 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ATP4AP20648 1035 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 PAX7P23759 505 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 RPL3P39023 403 aaKnown RBP13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 HECTD2Q5U5R9 776 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 USP50Q70EL3 339 aaPredicted RBP13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 FNIP1Q8TF40 1166 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ZHX1-C8orf76Q96EF9 292 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 TRAPPC9Q96Q05 1148 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 PRDM12Q9H4Q4 367 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ZNF226Q9NYT6 803 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ADGRE2Q9UHX3 823 aa13.17□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ZNF792Q3KQV3 632 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CPTPQ5TA50 214 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 LYSMD3Q7Z3D4 306 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 LIX1Q8N485 282 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ETNPPLQ8TBG4 499 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 NXF3Q9H4D5 531 aaKnown RBP13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 A0A087WXM4 84 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ATG13O75143 517 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 SRCP12931 536 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CTSKP43235 329 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CASP6P55212 293 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 RAB10P61026 200 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 RUNX2Q13950 521 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 NDUFA9Q16795 377 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 RNF43Q68DV7 783 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 RFWD3Q6PCD5 774 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 TTPALQ9BTX7 342 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 OR51V1Q9H2C8 321 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 IFT46Q9NQC8 304 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 NINJ2Q9NZG7 142 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CHD1O14646 1710 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 SAMD9LQ8IVG5 1584 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CHRM5P08912 532 aaPredicted RBP13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 DDX6P26196 483 aaKnown RBP eCLIP13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CORO7P57737 925 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 NOGQ13253 232 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 PITRM1Q5JRX3 1037 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 GPR107Q5VW38 600 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 RALGPS2Q86X27 583 aaPredicted RBP13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 HMGB4Q8WW32 186 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 OSBPL11Q9BXB4 747 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 PCDH18Q9HCL0 1135 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 SPAG4Q9NPE6 437 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CLTCQ00610 1675 aaKnown RBP13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ARHGEF33A8MVX0 844 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 APOC4-APOC2K7ER74 178 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 SAP18O00422 153 aaKnown RBP13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 APOC2P02655 101 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 PAEPP09466 180 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ADARP55265 1226 aaKnown RBP13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 SELENOVP59797 346 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 TAF10Q12962 218 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 USP4Q13107 963 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ITGA7Q13683 1181 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 UBXN11Q5T124 520 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 UBE2Q1Q7Z7E8 422 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ADGRA1Q86SQ6 560 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ADAMTSL2Q86TH1 951 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 OVCA2Q8WZ82 227 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 PRICKLE1Q96MT3 831 aaPredicted RBP13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 TCF25Q9BQ70 676 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 KBTBD4Q9NVX7 518 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 LEF1Q9UJU2 399 aaPredicted RBP13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 C3orf18Q9UK00 162 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CNTNAP4Q9C0A0 1308 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 GNSP15586 552 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 SLC7A1P30825 629 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 DHPSP49366 369 aaPredicted RBP13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CDK7P50613 346 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ZNF844Q08AG5 666 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 NAE1Q13564 534 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 SLC2A7Q6PXP3 512 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 VAT1Q99536 393 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 EVLQ9UI08 416 aaPredicted RBP13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 GRIP1Q9Y3R0 1128 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 NUDT17P0C025 328 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CASRP41180 1078 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 ACTR3P61158 418 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 PLEKHG4Q58EX7 1191 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 TOR1AIP1Q5JTV8 583 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 HMBOX1Q6NT76 420 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 FAM131AQ6UXB0 335 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 GPR65Q8IYL9 337 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 DEPDC4Q8N2C3 294 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 UBE2J2Q8N2K1 259 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CD99L2Q8TCZ2 262 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CLP1Q92989 425 aaKnown RBP13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 RIPOR3Q96MK2 946 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 MORF4L1Q9UBU8 362 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 SNX7Q9UNH6 387 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 LRRC7Q96NW7 1537 aa13.16□□□□□ -0.3
NPHP3-ACAD11-201ENST00000471702 CABYRO75952 493 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms